>ref|XM_464560.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1499

 Score =  202 bits (102), Expect = 4e-49
 Identities = 117/122 (95%)
 Strand = Plus / Plus

                                                                       
Query: 173 gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 298

                                                                       
Query: 233 caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292
           | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 358

             
Query: 293 cc 294
           ||
Sbjct: 359 cc 360

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  202 bits (102), Expect = 4e-49
 Identities = 117/122 (95%)
 Strand = Plus / Minus

                                                                           
Query: 173     gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232
               ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 5913954 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 5913895

                                                                           
Query: 233     caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292
               | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 5913894 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 5913835

                 
Query: 293     cc 294
               ||
Sbjct: 5913834 cc 5913833



 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                     
Query: 242      ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatccc 294
                ||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 19342382 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatccc 19342434

>dbj|AP005915.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0056C19
          Length = 147739

 Score =  202 bits (102), Expect = 4e-49
 Identities = 117/122 (95%)
 Strand = Plus / Minus

                                                                         
Query: 173   gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232
             ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 92175 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 92116

                                                                         
Query: 233   caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292
             | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 92115 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 92056

               
Query: 293   cc 294
             ||
Sbjct: 92055 cc 92054

>dbj|AP005008.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0544H11
          Length = 178376

 Score =  202 bits (102), Expect = 4e-49
 Identities = 117/122 (95%)
 Strand = Plus / Minus

                                                                          
Query: 173    gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232
              ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 143756 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 143697

                                                                          
Query: 233    caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292
              | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 143696 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 143637

                
Query: 293    cc 294
              ||
Sbjct: 143636 cc 143635

>dbj|AK106819.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-D06, full
           insert sequence
          Length = 1498

 Score =  202 bits (102), Expect = 4e-49
 Identities = 117/122 (95%)
 Strand = Plus / Plus

                                                                       
Query: 173 gggctgctggcgaacggcaacttcgagcgcgggccgcagccgtcgcagctgcgcgggacg 232
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 239 gggctgctggcgaacggcaacttcgagcgcgggccggcgccgtcgcagctgcgcgggacg 298

                                                                       
Query: 233 caggtggtgggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 292
           | |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cgggtggtcggcgcgtcggcgatcccgtcgtggcggacgtcggggttcgtggagtacatc 358

             
Query: 293 cc 294
           ||
Sbjct: 359 cc 360

>ref|XM_466051.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1089

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                
Query: 242 ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatccc 294
           ||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 619 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatccc 671

>dbj|AP004879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0475F05
          Length = 147522

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                  
Query: 242   ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatccc 294
             ||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 27873 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatccc 27925

>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0458B05
          Length = 144917

 Score = 89.7 bits (45), Expect = 5e-15
 Identities = 51/53 (96%)
 Strand = Plus / Plus

                                                                   
Query: 242    ggcgcgtcgtcgatcccgtcgtggcggacgtcggggttcgtggagtacatccc 294
              ||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 110180 ggcgcgtcggcgatcccgtcgtggcggacgttggggttcgtggagtacatccc 110232

>ref|XM_473018.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1122

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 164 atcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||||||| |||||| |||| ||||||||||||
Sbjct: 76  atcaccgatggcctgctgccgaatggcaacttcgag 111

>dbj|AK072539.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133J23, full
           insert sequence
          Length = 1588

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 164 atcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||||||| |||||| |||| ||||||||||||
Sbjct: 480 atcaccgatggcctgctgccgaatggcaacttcgag 515

>dbj|AK063925.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C04, full
           insert sequence
          Length = 1517

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 164 atcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||||||| |||||| |||| ||||||||||||
Sbjct: 189 atcaccgatggcctgctgccgaatggcaacttcgag 224

>ref|NM_192744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1122

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||| |||||| || |||||||||||||||||
Sbjct: 68  tcaccgacgggctgttgccgaacggcaacttcgag 102



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 gacgtcggggttcgtggagtacatc 292
           |||||| ||||||||||||||||||
Sbjct: 174 gacgtccgggttcgtggagtacatc 198

>dbj|AK105921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-A04, full
           insert sequence
          Length = 1474

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||| |||||| || |||||||||||||||||
Sbjct: 56  tcaccgacgggctgttgccgaacggcaacttcgag 90



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 gacgtcggggttcgtggagtacatc 292
           |||||| ||||||||||||||||||
Sbjct: 162 gacgtccgggttcgtggagtacatc 186

>dbj|AK100501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099J05, full
           insert sequence
          Length = 3062

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||| |||||| || |||||||||||||||||
Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 gacgtcggggttcgtggagtacatc 292
           |||||| ||||||||||||||||||
Sbjct: 291 gacgtccgggttcgtggagtacatc 315

>dbj|AK072500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H12, full
           insert sequence
          Length = 1690

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||| |||||| || |||||||||||||||||
Sbjct: 185 tcaccgacgggctgttgccgaacggcaacttcgag 219



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 gacgtcggggttcgtggagtacatc 292
           |||||| ||||||||||||||||||
Sbjct: 291 gacgtccgggttcgtggagtacatc 315

>dbj|AK060682.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-E10, full
           insert sequence
          Length = 1597

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 165 tcaccgatgggctgctggcgaacggcaacttcgag 199
           ||||||| |||||| || |||||||||||||||||
Sbjct: 181 tcaccgacgggctgttgccgaacggcaacttcgag 215



 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 268 gacgtcggggttcgtggagtacatc 292
           |||||| ||||||||||||||||||
Sbjct: 287 gacgtccgggttcgtggagtacatc 311

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 211     gccgtcgcagctgcgcgggacgcagg 236
               |||||||||||||||| |||||||||
Sbjct: 3584376 gccgtcgcagctgcgccggacgcagg 3584401

>ref|XM_473020.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1119

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 272 tcggggttcgtggagtacatc 292
           |||||||||||||||||||||
Sbjct: 184 tcggggttcgtggagtacatc 204

>ref|XM_808068.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508323.20) partial mRNA
          Length = 1788

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 215 tcgcagctgcgcgggacgcaggtgg 239
           |||||| ||||||||||||||||||
Sbjct: 97  tcgcagttgcgcgggacgcaggtgg 121

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 272      tcggggttcgtggagtacatc 292
                |||||||||||||||||||||
Sbjct: 24722610 tcggggttcgtggagtacatc 24722630



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 272      tcggggttcgtggagtacat 291
                ||||||||||||||||||||
Sbjct: 24730217 tcggggttcgtggagtacat 24730236



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 185      aacggcaacttcgagcgcgggccg 208
                |||||||||||||||| |||||||
Sbjct: 24727202 aacggcaacttcgagcacgggccg 24727225

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 268      gacgtcggggttcgtggagtacatc 292
                |||||| ||||||||||||||||||
Sbjct: 24178693 gacgtccgggttcgtggagtacatc 24178717

>dbj|AP002844.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0410E03
          Length = 164839

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 268    gacgtcggggttcgtggagtacatc 292
              |||||| ||||||||||||||||||
Sbjct: 154515 gacgtccgggttcgtggagtacatc 154539

>dbj|AP003314.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0046B10
          Length = 142596

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 268  gacgtcggggttcgtggagtacatc 292
            |||||| ||||||||||||||||||
Sbjct: 3257 gacgtccgggttcgtggagtacatc 3281

>emb|AL606629.3|OSJN00061 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0091E11,
              complete sequence
          Length = 133856

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 272    tcggggttcgtggagtacatc 292
              |||||||||||||||||||||
Sbjct: 112133 tcggggttcgtggagtacatc 112153



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 272    tcggggttcgtggagtacat 291
              ||||||||||||||||||||
Sbjct: 119740 tcggggttcgtggagtacat 119759



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 185    aacggcaacttcgagcgcgggccg 208
              |||||||||||||||| |||||||
Sbjct: 116725 aacggcaacttcgagcacgggccg 116748

>ref|XM_473021.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 207

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 185 aacggcaacttcgagcgcgggccg 208
           |||||||||||||||| |||||||
Sbjct: 103 aacggcaacttcgagcacgggccg 126

>ref|XM_752807.1| Ustilago maydis 521 hypothetical protein (UM01753.1) partial mRNA
          Length = 1020

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 96  tggcaaggtcagccatgtccgggc 119
           ||||||||||||||| ||||||||
Sbjct: 70  tggcaaggtcagccaggtccgggc 93

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 204    ggccgcagccgtcgcagctgcgcg 227
              ||||||||||| ||||||||||||
Sbjct: 232864 ggccgcagccggcgcagctgcgcg 232887

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 208     gcagccgtcgcagctgcgcg 227
               ||||||||||||||||||||
Sbjct: 1352922 gcagccgtcgcagctgcgcg 1352941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,484,442
Number of Sequences: 3902068
Number of extensions: 1484442
Number of successful extensions: 29997
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29717
Number of HSP's gapped (non-prelim): 280
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)