ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet35f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
2dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
3dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D... 107 1e-20
4gb|AY378100.1| Klebsiella pneumoniae plasmid pLVPK, complete seq... 42 0.72
5dbj|AP006726.1| Klebsiella pneumoniae NTUH-K2044 plasmid pK2044 ... 42 0.72
6ref|XM_479809.1| Oryza sativa (japonica cultivar-group), mRNA 40 2.9
7gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 2.9
8emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 2.9
9emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete ch... 40 2.9
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
12gb|AC008554.8| Homo sapiens chromosome 19 clone CTC-513N18, comp... 40 2.9
13gb|AC078899.1|AC078899 Homo sapiens chromosome 19, BAC BC371065 ... 40 2.9
14dbj|AP004134.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
15dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
16dbj|AK063150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
17dbj|AK063247.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9 
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  107 bits (54), Expect = 1e-20
 Identities = 63/66 (95%)
 Strand = Plus / Plus

                                                                           
Query: 68      aatggcgatcaagaaggggggcgcggcggggctgaagcagatcctgaagcggtgctccag 127
               |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 1999201 aatggcgatcaagaagggcggcgcggcggggctgaagcagatactgaagcggtgctcgag 1999260

                     
Query: 128     cctggg 133
               ||||||
Sbjct: 1999261 cctggg 1999266



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                 
Query: 191     gccgtcggacgtgccgcggggccacttcgcggtg 224
               |||||| ||||||||| |||||||||||||||||
Sbjct: 1999330 gccgtccgacgtgccgaggggccacttcgcggtg 1999363
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>dbj|AP003526.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0548D03
          Length = 156709

 Score =  107 bits (54), Expect = 1e-20
 Identities = 63/66 (95%)
 Strand = Plus / Plus

                                                                          
Query: 68     aatggcgatcaagaaggggggcgcggcggggctgaagcagatcctgaagcggtgctccag 127
              |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 127981 aatggcgatcaagaagggcggcgcggcggggctgaagcagatactgaagcggtgctcgag 128040

                    
Query: 128    cctggg 133
              ||||||
Sbjct: 128041 cctggg 128046



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                                
Query: 191    gccgtcggacgtgccgcggggccacttcgcggtg 224
              |||||| ||||||||| |||||||||||||||||
Sbjct: 128110 gccgtccgacgtgccgaggggccacttcgcggtg 128143
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>dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0041F13
          Length = 163230

 Score =  107 bits (54), Expect = 1e-20
 Identities = 63/66 (95%)
 Strand = Plus / Plus

                                                                         
Query: 68    aatggcgatcaagaaggggggcgcggcggggctgaagcagatcctgaagcggtgctccag 127
             |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 20063 aatggcgatcaagaagggcggcgcggcggggctgaagcagatactgaagcggtgctcgag 20122

                   
Query: 128   cctggg 133
             ||||||
Sbjct: 20123 cctggg 20128



 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                               
Query: 191   gccgtcggacgtgccgcggggccacttcgcggtg 224
             |||||| ||||||||| |||||||||||||||||
Sbjct: 20192 gccgtccgacgtgccgaggggccacttcgcggtg 20225
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>gb|AY378100.1| Klebsiella pneumoniae plasmid pLVPK, complete sequence
          Length = 219385

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 91     cggcggggctgaagcagatcc 111
              |||||||||||||||||||||
Sbjct: 180857 cggcggggctgaagcagatcc 180837
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>dbj|AP006726.1| Klebsiella pneumoniae NTUH-K2044 plasmid pK2044 DNA, complete genome
          Length = 224152

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 91     cggcggggctgaagcagatcc 111
              |||||||||||||||||||||
Sbjct: 110529 cggcggggctgaagcagatcc 110509
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>ref|XM_479809.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 309

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 197 ggacgtgccgcggggccacttcgcggtg 224
           |||||||||| |||| ||||||||||||
Sbjct: 75  ggacgtgccgaggggacacttcgcggtg 102
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 73     cgatcaagaaggggggcgcg 92
              ||||||||||||||||||||
Sbjct: 341728 cgatcaagaaggggggcgcg 341709
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 90      gcggcggggctgaagcagat 109
               ||||||||||||||||||||
Sbjct: 2328319 gcggcggggctgaagcagat 2328300
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>emb|AL591789.1|SME591789 Sinorhizobium meliloti 1021 complete chromosome; segment 8/12
          Length = 294800

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     caacgagcgggacgagctcg 41
              ||||||||||||||||||||
Sbjct: 123791 caacgagcgggacgagctcg 123810
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 197     ggacgtgccgcggggccacttcgcggtg 224
               |||||||||| |||| ||||||||||||
Sbjct: 1039438 ggacgtgccgaggggacacttcgcggtg 1039465
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 197      ggacgtgccgcggggccacttcgc 220
                |||||||||| |||||||||||||
Sbjct: 14455455 ggacgtgccgaggggccacttcgc 14455478



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 99       ctgaagcagatcctgaagcggtgctccagcct 130
                |||||||||||||||| | ||||||| |||||
Sbjct: 14433043 ctgaagcagatcctgaggaggtgctcgagcct 14433074
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>gb|AC008554.8| Homo sapiens chromosome 19 clone CTC-513N18, complete sequence
          Length = 166873

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 106  agatcctgaagcggtgctccagcctggg 133
            |||||||| ||| |||||||||||||||
Sbjct: 1782 agatcctgcagctgtgctccagcctggg 1755
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>gb|AC078899.1|AC078899 Homo sapiens chromosome 19, BAC BC371065 (CTC-575C13), complete sequence
          Length = 197912

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 106    agatcctgaagcggtgctccagcctggg 133
              |||||||| ||| |||||||||||||||
Sbjct: 180535 agatcctgcagctgtgctccagcctggg 180508
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>dbj|AP004134.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1116_C12
          Length = 116758

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 197   ggacgtgccgcggggccacttcgc 220
             |||||||||| |||||||||||||
Sbjct: 63953 ggacgtgccgaggggccacttcgc 63976



 Score = 40.1 bits (20), Expect = 2.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 99    ctgaagcagatcctgaagcggtgctccagcct 130
             |||||||||||||||| | ||||||| |||||
Sbjct: 41541 ctgaagcagatcctgaggaggtgctcgagcct 41572
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>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1005_B05
          Length = 144799

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 197   ggacgtgccgcggggccacttcgcggtg 224
             |||||||||| |||| ||||||||||||
Sbjct: 67965 ggacgtgccgaggggacacttcgcggtg 67992
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>dbj|AK063150.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-H06, full
           insert sequence
          Length = 577

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 197 ggacgtgccgcggggccacttcgc 220
           |||||||||| |||||||||||||
Sbjct: 80  ggacgtgccgaggggccacttcgc 103
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>dbj|AK063247.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G12, full
           insert sequence
          Length = 771

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 99  ctgaagcagatcctgaagcggtgctccagcct 130
           |||||||||||||||| | ||||||| |||||
Sbjct: 167 ctgaagcagatcctgaggaggtgctcgagcct 198


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,031,440
Number of Sequences: 3902068
Number of extensions: 2031440
Number of successful extensions: 493561
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 493338
Number of HSP's gapped (non-prelim): 223
length of query: 224
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 202
effective length of database: 17,147,199,772
effective search space: 3463734353944
effective search space used: 3463734353944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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