ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet35c09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185166.1| Oryza sativa (japonica cultivar-group), mRNA Length = 966 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 96 cgcgccccgccccaccgtccttgtcaccggcgccggcggccgcacaggtcaaatcgtgtt 155 |||| |||||||||||||||| |||||||||||||||||||||||||| | || || | Sbjct: 15 cgcggcccgccccaccgtcctcgtcaccggcgccggcggccgcacaggaaacattgtcta 74 Query: 156 caacaagctcagggacagatccgaccagtt 185 ||||||||||| ||| || || |||||||| Sbjct: 75 caacaagctcaaggaaaggtctgaccagtt 104 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 406 cctgagcaggtggactggattgggcagaagaatcagatcgatgccgccaaagcagccggt 465 |||||||||||||| |||||||| || ||||||||||| || | |||||||| || || Sbjct: 325 cctgagcaggtggattggattggccaaaagaatcagattgacactgccaaagctgctgga 384 Query: 466 gtgaagc 472 ||||||| Sbjct: 385 gtgaagc 391
>dbj|AK104209.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C03, full insert sequence Length = 1036 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 96 cgcgccccgccccaccgtccttgtcaccggcgccggcggccgcacaggtcaaatcgtgtt 155 |||| |||||||||||||||| |||||||||||||||||||||||||| | || || | Sbjct: 119 cgcggcccgccccaccgtcctcgtcaccggcgccggcggccgcacaggaaacattgtcta 178 Query: 156 caacaagctcagggacagatccgaccagtt 185 ||||||||||| ||| || || |||||||| Sbjct: 179 caacaagctcaaggaaaggtctgaccagtt 208 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 406 cctgagcaggtggactggattgggcagaagaatcagatcgatgccgccaaagcagccggt 465 |||||||||||||| |||||||| || ||||||||||| || | |||||||| || || Sbjct: 429 cctgagcaggtggattggattggccaaaagaatcagattgacactgccaaagctgctgga 488 Query: 466 gtgaagc 472 ||||||| Sbjct: 489 gtgaagc 495
>dbj|AK104151.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E08, full insert sequence Length = 1076 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 96 cgcgccccgccccaccgtccttgtcaccggcgccggcggccgcacaggtcaaatcgtgtt 155 |||| |||||||||||||||| |||||||||||||||||||||||||| | || || | Sbjct: 119 cgcggcccgccccaccgtcctcgtcaccggcgccggcggccgcacaggaaacattgtcta 178 Query: 156 caacaagctcagggacagatccgaccagtt 185 ||||||||||| ||| || || |||||||| Sbjct: 179 caacaagctcaaggaaaggtctgaccagtt 208 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 406 cctgagcaggtggactggattgggcagaagaatcagatcgatgccgccaaagcagccggt 465 |||||||||||||| |||||||| || ||||||||||| || | |||||||| || || Sbjct: 429 cctgagcaggtggattggattggccaaaagaatcagattgacactgccaaagctgctgga 488 Query: 466 gtgaagc 472 ||||||| Sbjct: 489 gtgaagc 495
>dbj|AK069405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023017D04, full insert sequence Length = 1088 Score = 83.8 bits (42), Expect = 5e-13 Identities = 78/90 (86%) Strand = Plus / Plus Query: 96 cgcgccccgccccaccgtccttgtcaccggcgccggcggccgcacaggtcaaatcgtgtt 155 |||| |||||||||||||||| |||||||||||||||||||||||||| | || || | Sbjct: 131 cgcggcccgccccaccgtcctcgtcaccggcgccggcggccgcacaggaaacattgtcta 190 Query: 156 caacaagctcagggacagatccgaccagtt 185 ||||||||||| ||| || || |||||||| Sbjct: 191 caacaagctcaaggaaaggtctgaccagtt 220 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 406 cctgagcaggtggactggattgggcagaagaatcagatcgatgccgccaaagcagccggt 465 |||||||||||||| |||||||| || ||||||||||| || | |||||||| || || Sbjct: 441 cctgagcaggtggattggattggccaaaagaatcagattgacactgccaaagctgctgga 500 Query: 466 gtgaagc 472 ||||||| Sbjct: 501 gtgaagc 507
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 96 cgcgccccgccccaccgtccttgtcaccggcgccggcggccgcacaggt 144 |||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 34225081 cgcggcccgccccaccgtcctcgtcaccggcgccggcggccgcacaggt 34225033 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 cttgtcaccggcgccggcggccgc 138 |||||| ||||||||||||||||| Sbjct: 8059505 cttgtcgccggcgccggcggccgc 8059482
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 96 cgcgccccgccccaccgtccttgtcaccggcgccggcggccgcacaggt 144 |||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 34315553 cgcggcccgccccaccgtcctcgtcaccggcgccggcggccgcacaggt 34315505 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 cttgtcaccggcgccggcggccgc 138 |||||| ||||||||||||||||| Sbjct: 8057340 cttgtcgccggcgccggcggccgc 8057317
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 96 cgcgccccgccccaccgtccttgtcaccggcgccggcggccgcacaggt 144 |||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 109917 cgcggcccgccccaccgtcctcgtcaccggcgccggcggccgcacaggt 109965
>ref|XM_493881.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 882 Score = 58.0 bits (29), Expect = 3e-05 Identities = 122/153 (79%) Strand = Plus / Plus Query: 303 cgacgcgctcgtcatcctcaccagcgcctcccccaagatgaagcccgggttcgaccccac 362 ||||||||| ||||||||||||| || || || |||||||| ||||| || |||| Sbjct: 330 cgacgcgcttatcatcctcaccagtgcggttccgaaaatgaagcctgggtttgatcccag 389 Query: 363 caagggcggccgccccgagttctactacgaccacggagcctaccctgagcaggtggactg 422 |||||| || ||||| |||||||||| || | || | || |||||||||||||| || Sbjct: 390 caaggggggacgcccagagttctactttgaggatggctcttatcctgagcaggtggattg 449 Query: 423 gattgggcagaagaatcagatcgatgccgccaa 455 |||||| |||| |||||| || ||||| ||||| Sbjct: 450 gattggccagaggaatcaaatagatgctgccaa 482 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 106 cccaccgtccttgtcaccggcgccggcggccgcacaggtcaaatcgtgttcaacaagctc 165 |||||||| || ||||||||||| |||||||| ||||| || || |||| ||| |||||| Sbjct: 133 cccaccgtgctcgtcaccggcgcaggcggccgaacaggccagattgtgtacaagaagctc 192 Query: 166 a 166 | Sbjct: 193 a 193
>dbj|AK071038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080F17, full insert sequence Length = 1588 Score = 58.0 bits (29), Expect = 3e-05 Identities = 122/153 (79%) Strand = Plus / Plus Query: 303 cgacgcgctcgtcatcctcaccagcgcctcccccaagatgaagcccgggttcgaccccac 362 ||||||||| ||||||||||||| || || || |||||||| ||||| || |||| Sbjct: 394 cgacgcgcttatcatcctcaccagtgcggttccgaaaatgaagcctgggtttgatcccag 453 Query: 363 caagggcggccgccccgagttctactacgaccacggagcctaccctgagcaggtggactg 422 |||||| || ||||| |||||||||| || | || | || |||||||||||||| || Sbjct: 454 caaggggggacgcccagagttctactttgaggatggctcttatcctgagcaggtggattg 513 Query: 423 gattgggcagaagaatcagatcgatgccgccaa 455 |||||| |||| |||||| || ||||| ||||| Sbjct: 514 gattggccagaggaatcaaatagatgctgccaa 546 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 106 cccaccgtccttgtcaccggcgccggcggccgcacaggtcaaatcgtgttcaacaagctc 165 |||||||| || ||||||||||| |||||||| ||||| || || |||| ||| |||||| Sbjct: 197 cccaccgtgctcgtcaccggcgcaggcggccgaacaggccagattgtgtacaagaagctc 256 Query: 166 a 166 | Sbjct: 257 a 257
>dbj|AK067116.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096K17, full insert sequence Length = 1381 Score = 58.0 bits (29), Expect = 3e-05 Identities = 122/153 (79%) Strand = Plus / Plus Query: 303 cgacgcgctcgtcatcctcaccagcgcctcccccaagatgaagcccgggttcgaccccac 362 ||||||||| ||||||||||||| || || || |||||||| ||||| || |||| Sbjct: 377 cgacgcgcttatcatcctcaccagtgcggttccgaaaatgaagcctgggtttgatcccag 436 Query: 363 caagggcggccgccccgagttctactacgaccacggagcctaccctgagcaggtggactg 422 |||||| || ||||| |||||||||| || | || | || |||||||||||||| || Sbjct: 437 caaggggggacgcccagagttctactttgaggatggctcttatcctgagcaggtggattg 496 Query: 423 gattgggcagaagaatcagatcgatgccgccaa 455 |||||| |||| |||||| || ||||| ||||| Sbjct: 497 gattggccagaggaatcaaatagatgctgccaa 529 Score = 50.1 bits (25), Expect = 0.007 Identities = 52/61 (85%) Strand = Plus / Plus Query: 106 cccaccgtccttgtcaccggcgccggcggccgcacaggtcaaatcgtgttcaacaagctc 165 |||||||| || ||||||||||| |||||||| ||||| || || |||| ||| |||||| Sbjct: 180 cccaccgtgctcgtcaccggcgcaggcggccgaacaggccagattgtgtacaagaagctc 239 Query: 166 a 166 | Sbjct: 240 a 240
>dbj|AP006363.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34B12, TM0147b, complete sequence Length = 56052 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 413 aggtggactggattgggcagaagaatcagatcgatgc 449 |||||||||||||||||||||| ||||| || ||||| Sbjct: 11797 aggtggactggattgggcagaaaaatcaaatagatgc 11833
>ref|NM_129322.2| Arabidopsis thaliana unknown protein AT2G37660 mRNA, complete cds Length = 1227 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 412 caggtggactggattgggcagaagaatcagat 443 ||||| ||||||||||| |||||||||||||| Sbjct: 617 caggttgactggattggtcagaagaatcagat 648
>gb|AY081456.1| Arabidopsis thaliana unknown protein (At2g37660) mRNA, complete cds Length = 1073 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 412 caggtggactggattgggcagaagaatcagat 443 ||||| ||||||||||| |||||||||||||| Sbjct: 535 caggttgactggattggtcagaagaatcagat 566
>gb|AY042827.1| Arabidopsis thaliana Unknown protein (At2g37660; F13M22.16) mRNA, complete cds Length = 1139 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 412 caggtggactggattgggcagaagaatcagat 443 ||||| ||||||||||| |||||||||||||| Sbjct: 550 caggttgactggattggtcagaagaatcagat 581
>gb|AY085201.1| Arabidopsis thaliana clone 13797 mRNA, complete sequence Length = 1176 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 412 caggtggactggattgggcagaagaatcagat 443 ||||| ||||||||||| |||||||||||||| Sbjct: 617 caggttgactggattggtcagaagaatcagat 648
>gb|AY111041.1| Zea mays CL63430_1 mRNA sequence Length = 844 Score = 48.1 bits (24), Expect = 0.026 Identities = 39/44 (88%) Strand = Plus / Plus Query: 406 cctgagcaggtggactggattgggcagaagaatcagatcgatgc 449 |||||||||||||| |||||||| || |||||||| || ||||| Sbjct: 255 cctgagcaggtggattggattggccaaaagaatcaaattgatgc 298 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 304 gacgcgctcgtcatcctcaccagcgc 329 ||||||||| |||||||||||||||| Sbjct: 153 gacgcgctcatcatcctcaccagcgc 178
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 445 gatgccgccaaagcagccggtgtgaag 471 ||||||||||||||||||| ||||||| Sbjct: 618278 gatgccgccaaagcagccgatgtgaag 618252
>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04, complete sequence Length = 176678 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 106 cccaccgtccttgtcaccggcgccggcggccgcacaggt 144 |||||||| || ||||||||||| |||||||| |||||| Sbjct: 38292 cccaccgtgctcgtcaccggcgcaggcggccgaacaggt 38330 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Plus Query: 303 cgacgcgctcgtcatcctcaccagcgcctcccccaagatgaagcccgggttcgaccccac 362 ||||||||| ||||||||||||| || || || |||||||| ||||| || |||| Sbjct: 38723 cgacgcgcttatcatcctcaccagtgcggttccgaaaatgaagcctgggtttgatcccag 38782 Query: 363 caagggcggccgccccgagttctact 388 |||||| || ||||| |||||||||| Sbjct: 38783 caaggggggacgcccagagttctact 38808
>gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence Length = 93845 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 413 aggtggactggattgggcagaagaatcagat 443 |||| ||||||||||| |||||||||||||| Sbjct: 52344 aggttgactggattggtcagaagaatcagat 52314
>gb|AC079022.2|AC079022 Oryza sativa chromosome 5 clone P0574H01, complete sequence Length = 151589 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 106 cccaccgtccttgtcaccggcgccggcggccgcacaggt 144 |||||||| || ||||||||||| |||||||| |||||| Sbjct: 120691 cccaccgtgctcgtcaccggcgcaggcggccgaacaggt 120729 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Plus Query: 303 cgacgcgctcgtcatcctcaccagcgcctcccccaagatgaagcccgggttcgaccccac 362 ||||||||| ||||||||||||| || || || |||||||| ||||| || |||| Sbjct: 121122 cgacgcgcttatcatcctcaccagtgcggttccgaaaatgaagcctgggtttgatcccag 121181 Query: 363 caagggcggccgccccgagttctact 388 |||||| || ||||| |||||||||| Sbjct: 121182 caaggggggacgcccagagttctact 121207
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.10 Identities = 35/39 (89%) Strand = Plus / Plus Query: 106 cccaccgtccttgtcaccggcgccggcggccgcacaggt 144 |||||||| || ||||||||||| |||||||| |||||| Sbjct: 520893 cccaccgtgctcgtcaccggcgcaggcggccgaacaggt 520931 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Plus Query: 303 cgacgcgctcgtcatcctcaccagcgcctcccccaagatgaagcccgggttcgaccccac 362 ||||||||| ||||||||||||| || || || |||||||| ||||| || |||| Sbjct: 521324 cgacgcgcttatcatcctcaccagtgcggttccgaaaatgaagcctgggtttgatcccag 521383 Query: 363 caagggcggccgccccgagttctact 388 |||||| || ||||| |||||||||| Sbjct: 521384 caaggggggacgcccagagttctact 521409
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Minus Query: 295 cagggcgccgacgcgctcgtcatcctcacc 324 |||||||||||||| ||||||||| ||||| Sbjct: 1787393 cagggcgccgacgccctcgtcatcgtcacc 1787364
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 283 gcgcccgccgtccagggcgccg 304 |||||||||||||||||||||| Sbjct: 2436900 gcgcccgccgtccagggcgccg 2436879 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gccgtccagggcgccgacgc 308 |||||||||||||||||||| Sbjct: 321168 gccgtccagggcgccgacgc 321187
>dbj|AK024362.1| Homo sapiens cDNA FLJ14300 fis, clone PLACE1011891 Length = 1870 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ggccgcgccccgccccaccgt 113 ||||||||||||||||||||| Sbjct: 429 ggccgcgccccgccccaccgt 409
>emb|BX819511.1|CNS0A9WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1048 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 419 actggattgggcagaagaatcagat 443 |||||||||| |||||||||||||| Sbjct: 532 actggattggtcagaagaatcagat 556
>gb|AE004818.1| Pseudomonas aeruginosa PAO1, section 379 of 529 of the complete genome Length = 11721 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 ccctgccaggtgccatggccg 97 ||||||||||||||||||||| Sbjct: 7134 ccctgccaggtgccatggccg 7114
>gb|AC018755.3|AC018755 Homo sapiens chromosome 19, BAC BC330783 (CIT-HSPC_470E3), complete sequence Length = 229155 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 93 ggccgcgccccgccccaccgt 113 ||||||||||||||||||||| Sbjct: 131353 ggccgcgccccgccccaccgt 131333
>emb|AJ332630.1|HSA332630 Homo sapiens genomic sequence surrounding NotI site, clone NR3-BC9C Length = 504 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ggccgcgccccgccccaccgt 113 ||||||||||||||||||||| Sbjct: 3 ggccgcgccccgccccaccgt 23
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 88 gccatggccgcgccccgccccaccg 112 ||||||||| ||||||||||||||| Sbjct: 2054777 gccatggccccgccccgccccaccg 2054801
>emb|AJ343325.1|HSA343325 Homo sapiens genomic sequence surrounding NotI site, clone NR1-RK1C Length = 696 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ggccgcgccccgccccaccgt 113 ||||||||||||||||||||| Sbjct: 3 ggccgcgccccgccccaccgt 23
>emb|AJ342620.1|HSA342620 Homo sapiens genomic sequence surrounding NotI site, clone NB6-578C Length = 593 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 ggccgcgccccgccccaccgt 113 ||||||||||||||||||||| Sbjct: 3 ggccgcgccccgccccaccgt 23
>ref|XM_550367.1| Oryza sativa (japonica cultivar-group), mRNA Length = 348 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 cgcgcccgccgtccagggcgccga 305 |||| ||||||||||||||||||| Sbjct: 174 cgcggccgccgtccagggcgccga 197
>gb|AC134048.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0076K20, complete sequence Length = 127338 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 100 ccccgccccaccgtccttgtcaccggcg 127 ||||||||| ||||||||||| |||||| Sbjct: 3577 ccccgccccgccgtccttgtctccggcg 3604
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 297 gggcgccgacgcgctcgtcatcctcacc 324 |||||| ||||||||||||||| ||||| Sbjct: 446245 gggcgcggacgcgctcgtcatcgtcacc 446218
>gb|AC133217.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence Length = 159632 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 100 ccccgccccaccgtccttgtcaccggcg 127 ||||||||| ||||||||||| |||||| Sbjct: 3028 ccccgccccgccgtccttgtctccggcg 3001
>gb|BC034761.1| Homo sapiens adrenomedullin receptor, mRNA (cDNA clone MGC:34399 IMAGE:5185932), complete cds Length = 1745 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gtcatcctcaccagcgcctccccc 336 |||| ||||||||||||||||||| Sbjct: 676 gtcaccctcaccagcgcctccccc 699
>ref|XM_956946.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 cgtccttgtcaccggcgccggcgg 134 |||| ||||||||||||||||||| Sbjct: 33 cgtcgttgtcaccggcgccggcgg 56
>ref|XM_330944.1| Neurospora crassa OR74A hypothetical protein (NCU08828.1) partial mRNA Length = 2685 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 cgtccttgtcaccggcgccggcgg 134 |||| ||||||||||||||||||| Sbjct: 33 cgtcgttgtcaccggcgccggcgg 56
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 297 gggcgccgacgcgctcgtcatcctcacc 324 |||||| ||||||||||||||| ||||| Sbjct: 3293878 gggcgcggacgcgctcgtcatcgtcacc 3293851
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 ctcgcgcccgccgtccaggg 299 |||||||||||||||||||| Sbjct: 720688 ctcgcgcccgccgtccaggg 720707
>gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosome 17, complete sequence Length = 178774 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ggcctggtgaggtccgagga 215 |||||||||||||||||||| Sbjct: 15985 ggcctggtgaggtccgagga 15966
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cacctcgcgcccgccgtcca 296 |||||||||||||||||||| Sbjct: 113231 cacctcgcgcccgccgtcca 113212
>gb|AC136481.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0007D07, complete sequence Length = 133930 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cacctcgcgcccgccgtcca 296 |||||||||||||||||||| Sbjct: 12850 cacctcgcgcccgccgtcca 12831
>gb|AC026120.33| Homo sapiens 12 BAC RP11-474N8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 171998 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gtcatcctcaccagcgcctccccc 336 |||| ||||||||||||||||||| Sbjct: 97569 gtcaccctcaccagcgcctccccc 97592
>gb|AC026261.8| Homo sapiens chromosome 8, clone RP11-610E3, complete sequence Length = 193670 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 gcagaagaatcagatcgatg 448 |||||||||||||||||||| Sbjct: 27585 gcagaagaatcagatcgatg 27566
>emb|X80052.1|NCFOX2 N.crassa fox-2 gene Length = 3401 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 cgtccttgtcaccggcgccggcgg 134 |||| ||||||||||||||||||| Sbjct: 277 cgtcgttgtcaccggcgccggcgg 300
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 274 ggccacctcgcgcccgccgtccagggcg 301 ||||||||||||| ||||| |||||||| Sbjct: 253618 ggccacctcgcgcgcgccgaccagggcg 253591
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 274 ggccacctcgcgcccgccgtccagggcg 301 ||||||||||||| ||||| |||||||| Sbjct: 162372 ggccacctcgcgcgcgccgaccagggcg 162399
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 297 gggcgccgacgcgctcgtcatcctcacc 324 |||||| ||||||||||||||| ||||| Sbjct: 3025007 gggcgcggacgcgctcgtcatcgtcacc 3024980
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 209 ccgaggagagcaagcagaagatcg 232 ||||||||| |||||||||||||| Sbjct: 5366056 ccgaggagatcaagcagaagatcg 5366079
>gb|AC018673.4| Homo sapiens chromosome 12 clone RP11-145A4, complete sequence Length = 187099 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gtcatcctcaccagcgcctccccc 336 |||| ||||||||||||||||||| Sbjct: 58164 gtcaccctcaccagcgcctccccc 58187
>gb|AY268434.1| Homo sapiens adrenomedullin receptor (ADMR) gene, complete cds Length = 1215 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gtcatcctcaccagcgcctccccc 336 |||| ||||||||||||||||||| Sbjct: 457 gtcaccctcaccagcgcctccccc 480
>gb|AC122406.5| Mus musculus BAC clone RP24-126L14 from chromosome 17, complete sequence Length = 161377 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 ggcctggtgaggtccgagga 215 |||||||||||||||||||| Sbjct: 85139 ggcctggtgaggtccgagga 85120
>gb|AC012323.7|AC012323 Homo sapiens chromosome 16 clone RP11-89O14, complete sequence Length = 176512 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 gactggattgggcagaagaatcag 441 |||| ||||||||||||||||||| Sbjct: 98305 gacttgattgggcagaagaatcag 98328
>dbj|AK047280.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:B930044O10 product:similar to RGL1 [Homo sapiens], full insert sequence Length = 1601 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 tcgtcatcctcaccagcgcc 330 |||||||||||||||||||| Sbjct: 669 tcgtcatcctcaccagcgcc 650
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cacctcgcgcccgccgtcca 296 |||||||||||||||||||| Sbjct: 19010033 cacctcgcgcccgccgtcca 19010014 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 100 ccccgccccaccgtccttgtcaccggcg 127 ||||||||| ||||||||||| |||||| Sbjct: 2723221 ccccgccccgccgtccttgtctccggcg 2723194
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 cgcgcccgccgtccagggcgccga 305 |||| ||||||||||||||||||| Sbjct: 3424856 cgcggccgccgtccagggcgccga 3424833
>gb|AC134240.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0081I10, complete sequence Length = 143298 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 cttgtcaccggcgccggcggccgc 138 |||||| ||||||||||||||||| Sbjct: 126868 cttgtcgccggcgccggcggccgc 126845
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 gcccgccgtccagggcgccg 304 |||||||||||||||||||| Sbjct: 3800599 gcccgccgtccagggcgccg 3800580
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 gcgccggcggccgcacaggt 144 |||||||||||||||||||| Sbjct: 1018226 gcgccggcggccgcacaggt 1018245
>gb|AF159428.1|AF159428 Burkholderia pseudomallei putative UDP-glucose dehydrogenase (udg), putative ADP-heptose synthase (waaE), and putative ADP-glycero-mannoheptose epimerase (gmhD) genes, complete cds Length = 3530 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 297 gggcgccgacgcgctcgtcatcctcacc 324 |||||| ||||||||||||||| ||||| Sbjct: 1242 gggcgcggacgcgctcgtcatcgtcacc 1269
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 tcaccggcgccggcggccgc 138 |||||||||||||||||||| Sbjct: 2700670 tcaccggcgccggcggccgc 2700651
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 gggcgccgacgcgctcgtca 316 |||||||||||||||||||| Sbjct: 8866825 gggcgccgacgcgctcgtca 8866806
>dbj|AP002864.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0033B09 Length = 143545 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 cgcgcccgccgtccagggcgccga 305 |||| ||||||||||||||||||| Sbjct: 41560 cgcggccgccgtccagggcgccga 41537
>dbj|AB023482.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone P0680A03 Length = 156054 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 282 cgcgcccgccgtccagggcgccga 305 |||| ||||||||||||||||||| Sbjct: 116410 cgcggccgccgtccagggcgccga 116387
>emb|Y15287.1|HSY15287 Homo sapiens gamrh gene Length = 3383 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gtcatcctcaccagcgcctccccc 336 |||| ||||||||||||||||||| Sbjct: 2351 gtcaccctcaccagcgcctccccc 2374
>dbj|AK071574.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D14, full insert sequence Length = 977 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cacctcgcgcccgccgtcca 296 |||||||||||||||||||| Sbjct: 195 cacctcgcgcccgccgtcca 176
>dbj|AK061093.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-A02, full insert sequence Length = 1053 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cacctcgcgcccgccgtcca 296 |||||||||||||||||||| Sbjct: 192 cacctcgcgcccgccgtcca 173
>gb|BC098932.1| Rattus norvegicus tumor suppressor candidate 4, mRNA (cDNA clone MGC:114378 IMAGE:7386309), complete cds Length = 2001 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ccgaggagagcaagcagaag 228 |||||||||||||||||||| Sbjct: 618 ccgaggagagcaagcagaag 637
>gb|BC083745.1| Rattus norvegicus tumor suppressor candidate 4, mRNA (cDNA clone IMAGE:7192224), partial cds Length = 1621 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ccgaggagagcaagcagaag 228 |||||||||||||||||||| Sbjct: 556 ccgaggagagcaagcagaag 575
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cacctcgcgcccgccgtcca 296 |||||||||||||||||||| Sbjct: 19168682 cacctcgcgcccgccgtcca 19168663 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 100 ccccgccccaccgtccttgtcaccggcg 127 ||||||||| ||||||||||| |||||| Sbjct: 2732252 ccccgccccgccgtccttgtctccggcg 2732225
>ref|NM_001025744.1| Rattus norvegicus tumor suppressor candidate 4 (Tusc4), mRNA Length = 2001 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 ccgaggagagcaagcagaag 228 |||||||||||||||||||| Sbjct: 618 ccgaggagagcaagcagaag 637
>gb|AC132400.3| Mus musculus BAC clone RP23-400A19 from 1, complete sequence Length = 218935 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 cgaggggcctggtgaggtcc 210 |||||||||||||||||||| Sbjct: 79175 cgaggggcctggtgaggtcc 79156
>ref|NM_007264.3| Homo sapiens adrenomedullin receptor (ADMR), mRNA Length = 1620 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gtcatcctcaccagcgcctccccc 336 |||| ||||||||||||||||||| Sbjct: 551 gtcaccctcaccagcgcctccccc 574
>emb|Y13583.1|HSGPCP Homo sapiens mRNA for G-protein coupled receptor Length = 1341 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 313 gtcatcctcaccagcgcctccccc 336 |||| ||||||||||||||||||| Sbjct: 551 gtcaccctcaccagcgcctccccc 574 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,237,867 Number of Sequences: 3902068 Number of extensions: 3237867 Number of successful extensions: 77005 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 79 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74508 Number of HSP's gapped (non-prelim): 2493 length of query: 477 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 455 effective length of database: 17,147,199,772 effective search space: 7801975896260 effective search space used: 7801975896260 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
