ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet35c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disint... 29 4.0
2RS13_THEVO (Q97B96) 30S ribosomal protein S13P 28 5.2
3SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (P... 28 5.2
4SYQ_CHRVO (Q7NX86) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glu... 28 6.8
5CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (E... 28 6.8
6ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing prote... 28 8.9

>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 20) (ADAM-TS
            20) (ADAM-TS20)
          Length = 1906

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 50   CPTAR*PRTHKGCWSIKTAGRWSWKSKSAKECVTT 154
            C     PRTHK C S +     SWK+   KEC  T
Sbjct: 1452 CSHLHKPRTHKACRSGRCP---SWKANKWKECSVT 1483



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>RS13_THEVO (Q97B96) 30S ribosomal protein S13P|
          Length = 171

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 24  GMNRKPGYGAQLRANLEPTKGVGRLRQQD 110
           G+  + GY    R NL+PTK +G L++ +
Sbjct: 54  GIGLRLGYAIAERLNLQPTKKIGELKEDE 82



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>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer|
            of yellow 3)
          Length = 2006

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 23   RDEPEAGLRCPTAR*PRTHKGCWSI--KTAGR---WSWKSKSAKECV 148
            RD PEA +RC T R  R H  C  +  +  GR   ++W+    K C+
Sbjct: 1707 RDMPEAFIRCYTCR-KRVHPSCVDMPPRMVGRVRNYNWQCAGCKCCI 1752



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>SYQ_CHRVO (Q7NX86) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA|
           ligase) (GlnRS)
          Length = 560

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
 Frame = -1

Query: 150 VTHSLADFDFHDHRPA-------VLIDQHP 82
           +THSL   +F DHRP        + I+ HP
Sbjct: 227 ITHSLCSLEFEDHRPLYDWVLDNISIEHHP 256



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>CYSH_NEIMA (Q9JUD5) Phosphoadenosine phosphosulfate reductase (EC 1.8.4.8)|
           (PAPS reductase, thioredoxin dependent) (PAdoPS
           reductase) (3'-phosphoadenylylsulfate reductase) (PAPS
           sulfotransferase)
          Length = 244

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 104 AGRWSWKSKSAKEC 145
           AGRW W+ K++KEC
Sbjct: 227 AGRWWWEDKNSKEC 240



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>ZBT34_HUMAN (Q8NCN2) Zinc finger and BTB domain-containing protein 34|
          Length = 500

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 21  CGMNRKPGYGAQLRANLEPTKGVGRLRQQDGGHGSRNPLRSV 146
           C   R+P   + LR    P+K + R R Q+ GH  R    SV
Sbjct: 168 CSQGRQPTASSDLRMETTPSKAL-RSRLQEEGHSDRGSSGSV 208


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,293,628
Number of Sequences: 219361
Number of extensions: 388219
Number of successful extensions: 880
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 80,573,946
effective HSP length: 31
effective length of database: 73,773,755
effective search space used: 1770570120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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