ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet35a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NLTP2_TOBAC (Q03461) Nonspecific lipid-transfer protein 2 precur... 34 0.074
2NLTP1_LYCES (P93224) Nonspecific lipid-transfer protein 1 precur... 34 0.074
3NLTP2_LYCES (P27056) Nonspecific lipid-transfer protein 2 precur... 34 0.096
4ZM33_MAIZE (O82106) Anther-specific protein MZm3-3 precursor 32 0.28
5CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22 32 0.48
6MC1_PINRA (O24493) Male-cone protein 1 precursor (PRMC1) 31 0.63
7A9_BRANA (Q05772) Tapetum-specific protein A9 precursor 30 1.1
8SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (S... 30 1.4
9UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27... 28 4.1
10NLTP_PYRCO (Q9M5X6) Nonspecific lipid-transfer protein precursor... 28 4.1
11WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY... 28 6.9
12NLTP_MALDO (Q9M5X7) Nonspecific lipid-transfer protein precursor... 28 6.9

>NLTP2_TOBAC (Q03461) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 114

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 236 ADKAECVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSK 370
           A+   C     GLA CL Y+Q     R P   CC G + +LG +K
Sbjct: 22  AEALSCGQVQSGLAPCLPYLQ----GRGPLGSCCGGVKGLLGAAK 62



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>NLTP1_LYCES (P93224) Nonspecific lipid-transfer protein 1 precursor (LTP 1)|
          Length = 114

 Score = 34.3 bits (77), Expect = 0.074
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +2

Query: 236 ADKAECVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSK 370
           A+   C +   GLA CL Y++     R P   CC G + +LG +K
Sbjct: 22  AESLSCGEVTSGLAPCLPYLE----GRGPLGGCCGGVKGLLGAAK 62



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>NLTP2_LYCES (P27056) Nonspecific lipid-transfer protein 2 precursor (LTP 2)|
          Length = 114

 Score = 33.9 bits (76), Expect = 0.096
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +2

Query: 236 ADKAECVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSK 370
           A+   C     GLA CL Y+Q     R P   CC G + +LG +K
Sbjct: 22  AEALTCGQVTAGLAPCLPYLQ----GRGPLGGCCGGVKNLLGSAK 62



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>ZM33_MAIZE (O82106) Anther-specific protein MZm3-3 precursor|
          Length = 109

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
 Frame = +2

Query: 251 CVDKLMGLATCLTYVQVSATAR---APTPDCCSGFRQVLGVSKKCLC 382
           C  +L GLA CL Y       +   AP P+CCS       VS+ C C
Sbjct: 45  CAGQLRGLAPCLRYSVPPLPGQVPPAPGPECCSALG---AVSRDCAC 88



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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 14/24 (58%), Positives = 18/24 (75%)
 Frame = -2

Query: 362 RPAPAGTRSSSRAWVRAPSPTPAR 291
           R   +GTRS SR++ R+PSP PAR
Sbjct: 834 RRGRSGTRSRSRSYSRSPSPPPAR 857



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>MC1_PINRA (O24493) Male-cone protein 1 precursor (PRMC1)|
          Length = 92

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +2

Query: 233 AADKAECVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSKKCLC 382
           A    +C + +  LA C + V +S+    P+ +CC   +   G S  C+C
Sbjct: 22  AVQAEDCSNAMDKLAPCTSAVGLSSNGVKPSSECCDALK---GTSTSCVC 68



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>A9_BRANA (Q05772) Tapetum-specific protein A9 precursor|
          Length = 96

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +2

Query: 248 ECVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSKKCLC 382
           +C+D L  +  C   V   A   AP  +CC   +     +K C+C
Sbjct: 31  QCLDNLSNMQVCAPLVLPGAVNPAPNSNCCIALQ---ATNKDCIC 72



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>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/33 (42%), Positives = 23/33 (69%)
 Frame = -2

Query: 389 RARTGTSC*RPAPAGTRSSSRAWVRAPSPTPAR 291
           R+ T +    P+P+ +RS SR+  ++PSP+PAR
Sbjct: 491 RSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAR 523



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>UGPI5_ARATH (Q9C7F7) Uncharacterized GPI-anchored protein At1g27950 precursor|
          Length = 193

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/48 (27%), Positives = 19/48 (39%)
 Frame = +2

Query: 248 ECVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSKKCLCVLV 391
           EC      +  CL +    AT   P+  CC     +     KCLC ++
Sbjct: 34  ECNQDFQKVTLCLDFATGKATI--PSKKCCDAVEDIKERDPKCLCFVI 79



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>NLTP_PYRCO (Q9M5X6) Nonspecific lipid-transfer protein precursor (LTP)|
           (Allergen Pyr c 3)
          Length = 115

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 251 CVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSK 370
           C      LA C+ YV+   +  A  P CC+G + + G++K
Sbjct: 27  CSQVSANLAPCINYVR---SGGAVPPACCNGIKTINGLAK 63



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>WRK19_ARATH (Q9SZ67) Probable WRKY transcription factor 19 (WRKY DNA-binding|
            protein 19)
          Length = 1895

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 46   LESSSASHAREGNTSQLWQCGRGLSIGKLPS*HHGVSA 159
            + ++S  +A EG+    WQ G+ L  G L S + G+SA
Sbjct: 1609 ISNTSPIYASEGSFITCWQKGQLLGRGSLGSVYEGISA 1646



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>NLTP_MALDO (Q9M5X7) Nonspecific lipid-transfer protein precursor (LTP)|
           (Allergen Mal d 3)
          Length = 115

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 251 CVDKLMGLATCLTYVQVSATARAPTPDCCSGFRQVLGVSK 370
           C      LA C+ YV+   +  A  P CC+G R + G+++
Sbjct: 27  CGQVTSSLAPCIGYVR---SGGAVPPACCNGIRTINGLAR 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,276,787
Number of Sequences: 219361
Number of extensions: 503889
Number of successful extensions: 1487
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1478
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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