ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet34h07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075I09, full insert sequence Length = 1106 Score = 287 bits (145), Expect = 9e-75 Identities = 187/201 (93%) Strand = Plus / Plus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 136 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 52 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 111 Query: 137 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaag 196 || ||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 112 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgcgccgcaccgtcaag 171 Query: 197 agcgcgccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctcc 256 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 172 agcgcgccccagagcatctggtatggacctgaccgtcccaagtacctgggcccgttctcg 231 Query: 257 gagcagaccccgtcgtacctg 277 |||||||| || ||||||||| Sbjct: 232 gagcagacgccatcgtacctg 252
>gb|AF061577.1|AF061577 Oryza sativa chlorophyll a/b binding protein (RCABP89) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1027 Score = 287 bits (145), Expect = 9e-75 Identities = 187/201 (93%) Strand = Plus / Plus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 136 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 41 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 100 Query: 137 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaag 196 || ||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 101 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgcgccgcaccgtcaag 160 Query: 197 agcgcgccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctcc 256 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 161 agcgcgccccagagcatctggtatggacctgaccgtcccaagtacctgggcccgttctcg 220 Query: 257 gagcagaccccgtcgtacctg 277 |||||||| || ||||||||| Sbjct: 221 gagcagacgccatcgtacctg 241
>dbj|D00642.1|RICLHCP2 Oryza sativa (japonica cultivar-group) mRNA for type II light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 989 Score = 287 bits (145), Expect = 9e-75 Identities = 187/201 (93%) Strand = Plus / Plus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 136 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 33 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 92 Query: 137 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaag 196 ||| |||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 93 gacgtcgtccgccgcgtcggcgactccggtggccgcatcaccatgcgccgcaccgtcaag 152 Query: 197 agcgcgccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctcc 256 ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 153 agcgcgccccagagcatctggtatggacctgaccgtcccaagtacctgggcccgttctcg 212 Query: 257 gagcagaccccgtcgtacctg 277 |||||||| || ||||||||| Sbjct: 213 gagcagacgccatcgtacctg 233
>gb|AF022739.1|AF022739 Oryza sativa chlorophyll a-b binding protein mRNA, complete cds Length = 1100 Score = 240 bits (121), Expect = 2e-60 Identities = 181/201 (90%) Strand = Plus / Plus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 136 ||||||||||||||||||||||| || ||||||||||||||||||||||| || || ||| Sbjct: 48 atggccgcgtcggcgctgcaccaaaccaccagcttcctcggcaccgcccctcgccgggat 107 Query: 137 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaag 196 || ||||||||| |||||||| ||| ||| |||||||||||||||||||| ||||||||| Sbjct: 108 gagctcgtccgccgcgtcggcaactccggtggccgcatcaccatgcgccgcaccgtcaag 167 Query: 197 agcgcgccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctcc 256 ||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||| Sbjct: 168 agcgcgccccaaaacatctggtatggacctgaccgtcccaagtacctgggcccgttctcg 227 Query: 257 gagcagaccccgtcgtacctg 277 || || || || ||||||||| Sbjct: 228 gaacaaacgccatcgtacctg 248
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 216 bits (109), Expect = 3e-53 Identities = 136/145 (93%) Strand = Plus / Minus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 136 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 79852 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 79793 Query: 137 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaag 196 || ||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 79792 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgcgccgcaccgtcaag 79733 Query: 197 agcgcgccccagagcatctggtacg 221 ||||||||||||||||||||||||| Sbjct: 79732 agcgcgccccagagcatctggtacg 79708 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Minus Query: 224 cctgaccgtcccaagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 |||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct: 79616 cctgaccgtcccaagtacctgggcccgttctcggagcagacgccatcgtacctg 79563
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 216 bits (109), Expect = 3e-53 Identities = 136/145 (93%) Strand = Plus / Plus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 136 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 21807964 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 21808023 Query: 137 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaag 196 || ||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 21808024 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgcgccgcaccgtcaag 21808083 Query: 197 agcgcgccccagagcatctggtacg 221 ||||||||||||||||||||||||| Sbjct: 21808084 agcgcgccccagagcatctggtacg 21808108 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 224 cctgaccgtcccaagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 |||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct: 21808200 cctgaccgtcccaagtacctgggcccgttctcggagcagacgccatcgtacctg 21808253
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 216 bits (109), Expect = 3e-53 Identities = 136/145 (93%) Strand = Plus / Plus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcggcaccgccccgcggcgcgat 136 |||||||||||||||||||||||||| ||||||||||||||||||||||| || || ||| Sbjct: 21800993 atggccgcgtcggcgctgcaccagaccaccagcttcctcggcaccgcccctcgccgggat 21801052 Query: 137 gacctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaag 196 || ||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| Sbjct: 21801053 gagctcgtccgccgcgtcggcgactccggtggccgcatcaccatgcgccgcaccgtcaag 21801112 Query: 197 agcgcgccccagagcatctggtacg 221 ||||||||||||||||||||||||| Sbjct: 21801113 agcgcgccccagagcatctggtacg 21801137 Score = 83.8 bits (42), Expect = 3e-13 Identities = 51/54 (94%) Strand = Plus / Plus Query: 224 cctgaccgtcccaagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 |||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct: 21801229 cctgaccgtcccaagtacctgggcccgttctcggagcagacgccatcgtacctg 21801282
>emb|X68682.1|ZMLHCB Z.mays mRNA for type II light-harvesting chlorophyll a/b-binding protein Length = 1126 Score = 157 bits (79), Expect = 2e-35 Identities = 106/115 (92%) Strand = Plus / Plus Query: 163 cggcggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacgg 222 |||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||| Sbjct: 123 cggcggccgcatcaccatgcgccgcaccgtcaagagcgttccccagagcatatggtacgg 182 Query: 223 ccctgaccgtcccaagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 |||||| || |||||||| || |||||||||||||||||||| |||||||||||| Sbjct: 183 ccctgatcgccccaagtatcttggcccgttctccgagcagacgccgtcgtacctg 237 Score = 58.0 bits (29), Expect = 2e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 77 atggccgcgtcggcgctgcaccagacgaccagcttcctcgg 117 |||||||||||| |||||||||||| |||||||||||||| Sbjct: 46 atggccgcgtcgcggctgcaccagaccaccagcttcctcgg 86
>gb|AF165529.1|AF165529 Rumex palustris chlorophyll a/b binding protein (CAB1) mRNA, complete cds Length = 986 Score = 127 bits (64), Expect = 2e-26 Identities = 91/100 (91%) Strand = Plus / Plus Query: 178 catgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgtcccaa 237 |||||||||||| ||||||||||| ||||||||||||||||| || || ||||||||||| Sbjct: 159 catgcgccggactgtcaagagcgctccccagagcatctggtatgggccagaccgtcccaa 218 Query: 238 gtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||| ||||||| ||||||||||||||||| ||||||||| Sbjct: 219 gtatttgggcccattctccgagcagaccccatcgtacctg 258
>gb|AF247178.1|AF247178 Picea glauca needle chlorophyll a/b-binding protein mRNA, complete cds; nuclear gene for chloroplast product Length = 1096 Score = 81.8 bits (41), Expect = 1e-12 Identities = 86/101 (85%) Strand = Plus / Plus Query: 173 atcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgt 232 ||||||||||| | ||||||| |||||| || ||||||| ||||| || |||||||| Sbjct: 180 atcaccatgcgaagaaccgtcaggagcgcccctgagagcatttggtatggacctgaccgc 239 Query: 233 cccaagtacctgggcccgttctccgagcagaccccgtcgta 273 ||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 240 cccaagtacctgggccccttctcggaacagacgccgtcgta 280
>emb|X74732.1|AHLHAH A.hypochondriacus Lhcb2*Ah1 mRNA Length = 1152 Score = 79.8 bits (40), Expect = 4e-12 Identities = 85/100 (85%) Strand = Plus / Plus Query: 177 ccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgtccca 236 |||||||||| || ||||||||||| || || ||||| ||||| || ||||||||||||| Sbjct: 273 ccatgcgccgcacagtcaagagcgctcctcaaagcatttggtatggtcctgaccgtccca 332 Query: 237 agtacctgggcccgttctccgagcagaccccgtcgtacct 276 |||| ||||||| ||||| || |||||||| || ||||| Sbjct: 333 agtatttgggccccttctcagaacagaccccatcatacct 372
>emb|Y13865.1|BVCHLOROP Beta vulgaris mRNA for chlorophyll a/b-binding protein Length = 1036 Score = 75.8 bits (38), Expect = 7e-11 Identities = 74/86 (86%) Strand = Plus / Plus Query: 191 gtcaagagcgcgccccagagcatctggtacggccctgaccgtcccaagtacctgggcccg 250 ||||||||||| || || ||||| |||||||| ||||||||||||||||| |||| || Sbjct: 196 gtcaagagcgcccctcaaagcatatggtacggtcctgaccgtcccaagtatttgggtccc 255 Query: 251 ttctccgagcagaccccgtcgtacct 276 ||||| ||||||||||| || ||||| Sbjct: 256 ttctcagagcagaccccatcatacct 281
>gb|AF279248.1|AF279248 Vigna radiata LHCII type II chlorophyll a/b-binding protein (CipLhcb2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1033 Score = 73.8 bits (37), Expect = 3e-10 Identities = 61/69 (88%) Strand = Plus / Plus Query: 178 catgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgtcccaa 237 ||||||||| |||||||| || || || |||||||| ||||| ||||||||||||||||| Sbjct: 164 catgcgccgcaccgtcaaaagtgctcctcagagcatttggtatggccctgaccgtcccaa 223 Query: 238 gtacctggg 246 |||| |||| Sbjct: 224 gtacttggg 232
>dbj|AB236867.1| Panax ginseng cab mRNA for chlorophyll a/b binding protein, complete cds Length = 935 Score = 69.9 bits (35), Expect = 4e-09 Identities = 80/95 (84%) Strand = Plus / Plus Query: 167 ggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccct 226 ||||||||||||||| | || ||||||| || || || ||||||| |||||||| ||| Sbjct: 119 ggccgcatcaccatgaggcgtaccgtcagaagtgctccagagagcatatggtacggacct 178 Query: 227 gaccgtcccaagtacctgggcccgttctccgagca 261 ||||| || |||||| ||||||| ||||||||||| Sbjct: 179 gaccgcccaaagtacttgggcccattctccgagca 213
>emb|X63197.1|HVLHBC H.vulgare lhbC mRNA for type III LHCII CAB precursor protein Length = 928 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctccgagcagaccccgtcgtac 274 ||||||||||| ||||| ||||||||||||||| ||||||| |||||| ||||||||| Sbjct: 178 tggtacggcccggaccgcgtcaagtacctgggccccttctccgcgcagacgccgtcgtac 237 Query: 275 ct 276 || Sbjct: 238 ct 239
>emb|X13407.1|PTCAB Pinus thunbergii cab mRNA for light-harvesting chlorophyll a/b binding protein Length = 978 Score = 61.9 bits (31), Expect = 1e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 173 atcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgt 232 ||||||||||| | ||||| | |||||| ||| ||||||| ||||| || |||||||| Sbjct: 155 atcaccatgcgaagaaccgtaaggagcgcccccgagagcatttggtatggacctgaccgc 214 Query: 233 cccaagtacctgggcccgttctc 255 ||||||||||| ||||| ||||| Sbjct: 215 cccaagtacctaggccccttctc 237
>gb|M12152.1|LGIAB19A Lemna gibba chlorophyll a/b apoprotein gene, complete cds Length = 1913 Score = 61.9 bits (31), Expect = 1e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 140 ctcgtccgcagcgtcggcgacttcggcggccgcatcaccatgcgccggaccgtcaagagc 199 |||||||||| ||||||| || || ||||||| || |||||||||| ||||||||| | Sbjct: 722 ctcgtccgcaaggtcggcgtctccgacggccgcttctccatgcgccgcaccgtcaaggcc 781 Query: 200 gcgccccagagcatctggt 218 | |||||||||||||||| Sbjct: 782 gtcccccagagcatctggt 800 Score = 50.1 bits (25), Expect = 0.004 Identities = 40/45 (88%) Strand = Plus / Plus Query: 233 cccaagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||| |||||| || ||||| |||||||| |||||||||||| Sbjct: 899 cccaagttcctggggcccttctcggagcagacgccgtcgtacctg 943
>gb|M97171.1|SOYCAB6A Glycine max chlorophyll a/b binding protein type II (Cab-6) gene, complete cds; nuclear gene for chloroplast product Length = 1322 Score = 60.0 bits (30), Expect = 4e-06 Identities = 54/62 (87%) Strand = Plus / Plus Query: 216 ggtacggccctgaccgtcccaagtacctgggcccgttctccgagcagaccccgtcgtacc 275 |||| |||||||| ||||||||||||||||| || ||||| ||||||| ||||| |||| Sbjct: 461 ggtatggccctgatcgtcccaagtacctgggtccattctcagagcagattccgtcatacc 520 Query: 276 tg 277 || Sbjct: 521 tg 522 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 170 cgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggta 219 |||| |||||||||||| ||||||||||| || || |||||||| ||||| Sbjct: 335 cgcaccaccatgcgccgtaccgtcaagagtgctcctcagagcatttggta 384
>gb|AF039598.1| Prunus persica light harvesting chlorophyll A/B binding protein (Lhcb-Pp2) mRNA, complete cds Length = 955 Score = 60.0 bits (30), Expect = 4e-06 Identities = 81/98 (82%) Strand = Plus / Plus Query: 164 ggcggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggc 223 |||||||||||||||||| | || |||||||| ||| | ||||| ||||| ||||| ||| Sbjct: 94 ggcggccgcatcaccatgaggcgcaccgtcaaaagcaccccccaaagcatatggtatggc 153 Query: 224 cctgaccgtcccaagtacctgggcccgttctccgagca 261 || ||||| || || ||| |||| || ||||| ||||| Sbjct: 154 ccagaccgcccaaaatacttgggaccattctctgagca 191
>ref|NM_113685.3| Arabidopsis thaliana LHCB2:4; chlorophyll binding AT3G27690 (LHCB2:4) mRNA, complete cds Length = 946 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 167 ggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccct 226 |||||||||| |||||| || ||||||||| | || ||||||||||||||||| || Sbjct: 155 ggccgcatcatcatgcgtcgtaccgtcaagtctactcctcagagcatctggtacggacca 214 Query: 227 gaccgtcccaagtacct 243 ||||||||||| ||||| Sbjct: 215 gaccgtcccaaatacct 231
>gb|BT006298.1| Arabidopsis thaliana At3g27700 mRNA, complete cds Length = 801 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 167 ggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccct 226 |||||||||| |||||| || ||||||||| | || ||||||||||||||||| || Sbjct: 100 ggccgcatcatcatgcgtcgtaccgtcaagtctactcctcagagcatctggtacggacca 159 Query: 227 gaccgtcccaagtacct 243 ||||||||||| ||||| Sbjct: 160 gaccgtcccaaatacct 176
>gb|AF370557.1|AF370557 Arabidopsis thaliana light harvesting chlorophyll a/b-binding protein (MGF10.9) mRNA, complete cds Length = 917 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 167 ggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccct 226 |||||||||| |||||| || ||||||||| | || ||||||||||||||||| || Sbjct: 149 ggccgcatcatcatgcgtcgtaccgtcaagtctactcctcagagcatctggtacggacca 208 Query: 227 gaccgtcccaagtacct 243 ||||||||||| ||||| Sbjct: 209 gaccgtcccaaatacct 225
>gb|AF134125.1| Arabidopsis thaliana Lhcb2 protein (Lhcb2:4) mRNA, complete cds Length = 897 Score = 58.0 bits (29), Expect = 2e-05 Identities = 65/77 (84%) Strand = Plus / Plus Query: 167 ggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccct 226 |||||||||| |||||| || ||||||||| | || ||||||||||||||||| || Sbjct: 105 ggccgcatcatcatgcgtcgtaccgtcaagtctactcctcagagcatctggtacggacca 164 Query: 227 gaccgtcccaagtacct 243 ||||||||||| ||||| Sbjct: 165 gaccgtcccaaatacct 181
>gb|AY389573.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 40 (LHCP) mRNA, partial cds Length = 712 Score = 56.0 bits (28), Expect = 6e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 214 ctggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 |||||||||||| |||||| ||||||||| ||||||||||||| Sbjct: 105 ctggtacggcccggaccgtgtcaagtacctcggcccgttctccg 148
>gb|M16887.1|SIPCAB White campion chlorophyll a/b-binding protein precursor (CAB) mRNA, partial cds Length = 642 Score = 56.0 bits (28), Expect = 6e-05 Identities = 58/68 (85%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtacctgggcccgttctccgagcagaccccg 268 ||||||||||| || || ||||||||||||||| | ||||| ||||| ||||| ||||| Sbjct: 163 agcatctggtatggtccagaccgtcccaagtacttaggccccttctcagagcaaacccca 222 Query: 269 tcgtacct 276 || ||||| Sbjct: 223 tcatacct 230
>gb|AY389606.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 40 mRNA, complete cds Length = 859 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 ||||||||||| |||||| ||||||||| ||||||||||||| Sbjct: 202 tggtacggcccggaccgtgtcaagtacctcggcccgttctccg 244
>emb|Z49749.1|PMLHCABBP P.menziesii mRNA for light-harvesting chlorophyll a/b binding protein of photosystem II Length = 772 Score = 54.0 bits (27), Expect = 2e-04 Identities = 57/67 (85%) Strand = Plus / Plus Query: 207 agagcatctggtacggccctgaccgtcccaagtacctgggcccgttctccgagcagaccc 266 ||||||| ||||| || ||||| || ||||||||||||||||| || || || ||||| | Sbjct: 46 agagcatttggtatggacctgatcgccccaagtacctgggccccttttcggaacagacgc 105 Query: 267 cgtcgta 273 ||||||| Sbjct: 106 cgtcgta 112
>dbj|D14002.1|LAUCAB Lettuce mRNA for light-harvesting chlorophyll a/b-binding protein (LHCP), complete cds Length = 905 Score = 54.0 bits (27), Expect = 2e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 |||||||||||||||||| ||||||||| ||||| ||||||| Sbjct: 192 tggtacggccctgaccgtgtcaagtacctaggcccattctccg 234
>gb|AY818400.1| Manihot esculenta chloroplast chlorophyll A/B binding protein mRNA, partial cds; nuclear gene for chloroplast product Length = 732 Score = 52.0 bits (26), Expect = 0.001 Identities = 70/85 (82%) Strand = Plus / Plus Query: 177 ccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgtccca 236 |||||||| | || |||||||| || || | ||||| ||||| ||||| |||||||||| Sbjct: 41 ccatgcgcagaactgtcaagagtgctccnccaagcatatggtatggcccagaccgtccca 100 Query: 237 agtacctgggcccgttctccgagca 261 |||| |||| |||||||| ||||| Sbjct: 101 agtatttgggtccgttctctgagca 125
>gb|AF526508.1| Vicia faba A-B binding protein (CHLOR1) mRNA, partial cds; nuclear gene for chloroplast product Length = 412 Score = 52.0 bits (26), Expect = 0.001 Identities = 68/82 (82%) Strand = Plus / Plus Query: 174 tcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgtc 233 |||||||||| || ||||| ||||| || || | ||||| ||||| || |||||||||| Sbjct: 96 tcaccatgcgtcgtaccgtgaagagtgctcctgaaagcatttggtatggtcctgaccgtc 155 Query: 234 ccaagtacctgggcccgttctc 255 |||||||| |||| || ||||| Sbjct: 156 ccaagtacttgggtccattctc 177
>dbj|AP008949.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT44M23, TM1572a, complete sequence Length = 48924 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 216 ggtacggccctgaccgtcccaagtacctgggcccgttctccgagca 261 |||| ||||||||||||||||||||| |||| || ||||| ||||| Sbjct: 40051 ggtatggccctgaccgtcccaagtacttgggtcctttctctgagca 40096
>gb|M60049.1|DUNCAB D.tertiolecta 28.5-kDa LHCII apoprotein mRNA, complete cds Length = 1041 Score = 52.0 bits (26), Expect = 0.001 Identities = 38/42 (90%) Strand = Plus / Plus Query: 218 tacggccctgaccgtcccaagtacctgggcccgttctccgag 259 |||||||||||||| |||||| ||||||||| ||||||||| Sbjct: 145 tacggccctgaccgcgccaagttcctgggccccttctccgag 186
>ref|NM_126537.2| Arabidopsis thaliana LHCB2.2; chlorophyll binding AT2G05070 (LHCB2.2) mRNA, complete cds Length = 1060 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 193 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 245
>ref|NM_126540.2| Arabidopsis thaliana LHCB2.1; chlorophyll binding AT2G05100 (LHCB2.1) mRNA, complete cds Length = 1068 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 200 agcatctggtacggaccagaccgtcccaagtac 232
>gb|AY093372.1| Arabidopsis thaliana putative chlorophyll a/b binding protein (At2g05070) mRNA, complete cds Length = 881 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 133 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 185
>gb|AY066036.1| Arabidopsis thaliana At2g05070/F1O13.20 mRNA, complete cds Length = 798 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 133 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 185
>gb|AY062563.1| Arabidopsis thaliana putative chlorophyll a/b binding protein (At2g05070; F1O13.20) mRNA, complete cds Length = 958 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 193 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 245
>gb|AY054218.1| Arabidopsis thaliana At2g05070/F1O13.20 mRNA, complete cds Length = 929 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 191 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 243
>gb|AY052348.1| Arabidopsis thaliana At2g05100/F15L11.2 mRNA, complete cds Length = 1001 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 198 agcatctggtacggaccagaccgtcccaagtac 230
>gb|AY052275.1| Arabidopsis thaliana At2g05100/F15L11.2 mRNA, complete cds Length = 943 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 193 agcatctggtacggaccagaccgtcccaagtac 225
>emb|BX819843.1|CNS0A9GW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS37ZB02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 980 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 178 agcatctggtacggaccagaccgtcccaagtac 210
>emb|BX819702.1|CNS0A9H1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZH11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 912 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 161 agcatctggtacggaccagaccgtcccaagtac 193
>emb|BX819347.1|CNS0A9RX Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB70ZE07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 933 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 174 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 226
>emb|BX821844.1|CNS0A936 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZE01 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 859 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 176 agcatctggtacggaccagaccgtcccaagtac 208
>emb|BX821132.1|CNS0A9BI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL18ZF10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 941 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 176 agcatctggtacggaccagaccgtcccaagtac 208
>emb|BX820206.1|CNS0A9D7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS92ZF11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 906 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 182 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 234
>emb|BX820202.1|CNS0A9FS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS92ZB05 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 873 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 176 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 228
>emb|BX819861.1|CNS0A9DS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZD09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 964 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 190 agcatctggtacggaccagaccgtcccaagtac 222
>emb|BX819688.1|CNS0A9G4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS17ZE08 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 914 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 159 agcatctggtacggaccagaccgtcccaagtac 191
>emb|BX819687.1|CNS0A9G3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS17ZE07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 917 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 161 agcatctggtacggaccagaccgtcccaagtac 193
>emb|BX819668.1|CNS0A9CZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS14ZC11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 930 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 181 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 233
>emb|BX819683.1|CNS0A80L Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS17ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 922 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 161 agcatctggtacggaccagaccgtcccaagtac 193
>emb|BX819509.1|CNS0A82Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB85ZB03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 926 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 169 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 221
>emb|BX842010.1|CNS09YA7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS22ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 934 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 181 agcatctggtacggaccagaccgtcccaagtac 213
>gb|AF134124.1| Arabidopsis thaliana Lhcb2 protein (Lhcb2.3) mRNA, complete cds Length = 967 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 188 agcatctggtacggaccagaccgtcccaagtac 220
>gb|AF134123.1| Arabidopsis thaliana Lhcb2 protein (Lhcb2.2) mRNA, complete cds Length = 943 Score = 50.1 bits (25), Expect = 0.004 Identities = 46/53 (86%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||||||| || || ||||||||||||||| |||| || ||||| Sbjct: 183 ccccaaagcatctggtatggaccagaccgtcccaagtacttgggaccattctc 235
>gb|BT001933.1| Arabidopsis thaliana clone C105385 putative chlorophyll a/b binding protein (At2g05100) mRNA, complete cds Length = 829 Score = 50.1 bits (25), Expect = 0.004 Identities = 31/33 (93%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtac 241 |||||||||||||| || ||||||||||||||| Sbjct: 139 agcatctggtacggaccagaccgtcccaagtac 171
>gb|U51632.1|PPU51632 Pinus palustris type 2 light-harvesting chlorophyll a/b-binding polypeptide (Lhcb2) mRNA, partial cds Length = 873 Score = 50.1 bits (25), Expect = 0.004 Identities = 82/101 (81%) Strand = Plus / Plus Query: 173 atcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggccctgaccgt 232 ||||||||||| | ||||| | ||| || ||| ||||||| ||||| || || ||||| Sbjct: 46 atcaccatgcgtagaaccgtaaggagtgcccccgagagcatttggtatggacccgaccgc 105 Query: 233 cccaagtacctgggcccgttctccgagcagaccccgtcgta 273 ||||||||||| ||||| ||||| || ||||| || ||||| Sbjct: 106 cccaagtacctcggccccttctcggaacagacgccctcgta 146
>dbj|AB012641.1| Nicotiana sylvestris Lhcb1*9 gene for light harvesting chlorophyll a/b-binding protein, complete cds Length = 3386 Score = 50.1 bits (25), Expect = 0.004 Identities = 37/41 (90%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 |||||||||||||||||| ||||||| ||||||| ||||| Sbjct: 1601 tggtacggccctgaccgtgtcaagtacttgggcccattctc 1641
>gb|AY088541.1| Arabidopsis thaliana clone 7700 mRNA, complete sequence Length = 917 Score = 48.1 bits (24), Expect = 0.015 Identities = 66/80 (82%) Strand = Plus / Plus Query: 164 ggcggccgcatcaccatgcgccggaccgtcaagagcgcgccccagagcatctggtacggc 223 ||||||||| | | ||||||||| ||||||||| | || |||||||||||||| || Sbjct: 146 ggcggccgcgttatcatgcgccgtaccgtcaagtctacccctcagagcatctggtatgga 205 Query: 224 cctgaccgtcccaagtacct 243 || ||||||||||| ||||| Sbjct: 206 ccagaccgtcccaaatacct 225
>gb|AF134122.1| Arabidopsis thaliana Lhcb2 protein (Lhcb2.1) mRNA, complete cds Length = 974 Score = 48.1 bits (24), Expect = 0.015 Identities = 57/68 (83%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtacctgggcccgttctccgagcagaccccg 268 ||||| |||||||| || ||||||||||||||| |||| || ||||| ||| | || ||| Sbjct: 197 agcatttggtacggaccagaccgtcccaagtacttgggaccattctcggagaacacaccg 256 Query: 269 tcgtacct 276 || ||||| Sbjct: 257 tcctacct 264
>gb|AY845254.1| Pisum sativum light-harvesting chlorophyll-a/b binding protein Lhcb2 mRNA, complete cds Length = 798 Score = 46.1 bits (23), Expect = 0.058 Identities = 41/47 (87%) Strand = Plus / Plus Query: 209 agcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||| || |||||||||||||||||| |||| || ||||| Sbjct: 139 agcatttggtatggtcctgaccgtcccaagtacttgggtccattctc 185
>gb|AY389553.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein (CAB) mRNA, partial cds Length = 720 Score = 46.1 bits (23), Expect = 0.058 Identities = 38/43 (88%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 ||||||||||| || ||| ||||||||| ||||||||||||| Sbjct: 186 tggtacggccccgaacgtgtcaagtacctcggcccgttctccg 228
>gb|AY389549.1| Hyacinthus orientalis chloroplast chlorophyll A-B binding protein 3C (LHCP) mRNA, partial cds Length = 661 Score = 46.1 bits (23), Expect = 0.058 Identities = 38/43 (88%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 ||||||||||| || ||| ||||||||| ||||||||||||| Sbjct: 21 tggtacggccccgaacgtgtcaagtacctcggcccgttctccg 63
>gb|AF139467.2|AF139467 Vigna radiata LHCII type I chlorophyll a/b binding protein (CipLhcb1) mRNA, complete cds; nuclear gene for chloroplast product Length = 975 Score = 46.1 bits (23), Expect = 0.058 Identities = 38/43 (88%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 ||||||||||| |||||| ||||||| ||||||| ||||||| Sbjct: 197 tggtacggcccagaccgtgtcaagtacttgggcccattctccg 239
>gb|AF003129.1|AF003129 Mesembryanthemum crystallinum chlorophyll a/b-binding protein (CAB3) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1011 Score = 46.1 bits (23), Expect = 0.058 Identities = 38/43 (88%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 ||||||||||| |||||| ||||||||| ||||| ||||||| Sbjct: 207 tggtacggcccagaccgtgtcaagtacctaggcccattctccg 249
>ref|XM_478729.1| Oryza sativa (japonica cultivar-group), mRNA Length = 972 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 197 aagtacctggggccattctcggcgcagacgccgtcgtacctg 238
>ref|XM_507374.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 995 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 221 aagtacctggggccattctcggcgcagacgccgtcgtacctg 262
>ref|XM_507373.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1007 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 221 aagtacctggggccattctcggcgcagacgccgtcgtacctg 262
>ref|XM_507372.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1108 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 223 aagtacctggggccattctcggcgcagacgccgtcgtacctg 264
>ref|XM_507371.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1000 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>ref|XM_507370.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1012 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>ref|XM_507369.1| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1032 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 228 aagtacctggggccattctcggcgcagacgccgtcgtacctg 269
>ref|XM_506410.2| PREDICTED Oryza sativa (japonica cultivar-group), P0406F06.33 mRNA Length = 1159 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 261 aagtacctggggccattctcggcgcagacgccgtcgtacctg 302
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 22434234 aagtacctggggccattctcggcgcagacgccgtcgtacctg 22434275
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 95301 aagtacctggggccattctcggcgcagacgccgtcgtacctg 95342
>dbj|AK109399.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C08, full insert sequence Length = 1111 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>dbj|AK119545.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G05, full insert sequence Length = 1012 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>dbj|AK119533.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-F03, full insert sequence Length = 1000 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>emb|AJ234427.1|HVU234427 Hordeum vulgare partial mRNA; clone cMWG0701.uni Length = 312 Score = 44.1 bits (22), Expect = 0.23 Identities = 22/22 (100%) Strand = Plus / Plus Query: 163 cggcggccgcatcaccatgcgc 184 |||||||||||||||||||||| Sbjct: 128 cggcggccgcatcaccatgcgc 149
>dbj|AK104495.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C03, full insert sequence Length = 973 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 197 aagtacctggggccattctcggcgcagacgccgtcgtacctg 238
>dbj|AK104465.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C07, full insert sequence Length = 1012 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>dbj|AK104224.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E11, full insert sequence Length = 995 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 221 aagtacctggggccattctcggcgcagacgccgtcgtacctg 262
>dbj|AK103999.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-D10, full insert sequence Length = 1007 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 221 aagtacctggggccattctcggcgcagacgccgtcgtacctg 262
>dbj|AK103926.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D02, full insert sequence Length = 1000 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>dbj|AK068972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001G03, full insert sequence Length = 1107 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 222 aagtacctggggccattctcggcgcagacgccgtcgtacctg 263
>dbj|AK061512.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G12, full insert sequence Length = 1032 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 228 aagtacctggggccattctcggcgcagacgccgtcgtacctg 269
>dbj|AK058312.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H12, full insert sequence Length = 1040 Score = 44.1 bits (22), Expect = 0.23 Identities = 37/42 (88%) Strand = Plus / Plus Query: 236 aagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 ||||||||||| || ||||| | |||||| |||||||||||| Sbjct: 226 aagtacctggggccattctcggcgcagacgccgtcgtacctg 267
>ref|XM_419622.1| PREDICTED: Gallus gallus similar to solute carrier family 22 member 2; solute carrier family 22, member 2 (LOC421584), mRNA Length = 1735 Score = 42.1 bits (21), Expect = 0.91 Identities = 21/21 (100%) Strand = Plus / Minus Query: 52 gcaggcagccccagccaccag 72 ||||||||||||||||||||| Sbjct: 1251 gcaggcagccccagccaccag 1231
>gb|DQ124219.1| Fagus sylvatica putative chlorophyll a/b-binding protein mRNA, partial cds Length = 780 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| |||||| ||||||| ||||||| ||||| Sbjct: 133 tggtacggcccagaccgtgtcaagtacttgggcccattctc 173
>gb|AE005806.1| Caulobacter crescentus CB15 section 132 of 359 of the complete genome Length = 10111 Score = 42.1 bits (21), Expect = 0.91 Identities = 27/29 (93%) Strand = Plus / Minus Query: 142 cgtccgcagcgtcggcgacttcggcggcc 170 |||||| |||||||||||| ||||||||| Sbjct: 7568 cgtccggagcgtcggcgacgtcggcggcc 7540
>emb|BX819270.1|CNS0A9RF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB62ZB12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 937 Score = 42.1 bits (21), Expect = 0.91 Identities = 45/53 (84%) Strand = Plus / Plus Query: 203 ccccagagcatctggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||| ||||||| ||| || || ||||||||||||||| |||| || ||||| Sbjct: 164 ccccaaagcatcttgtatggaccagaccgtcccaagtacttgggaccattctc 216
>gb|AF330793.1|AF330793 Chlamydomonas reinhardtii light-harvesting complex II protein precursor (cabII-2) mRNA, complete cds Length = 1068 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| ||||| || |||| ||||||||| ||||| Sbjct: 118 tggtacggccccgaccgcccgaagttcctgggccccttctc 158
>gb|AF279249.1|AF279249 Vigna radiata LHCII type I chlorophyll a/b-binding protein (CipLhcb1*2) mRNA, complete cds; nuclear gene for chloroplast product Length = 932 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| |||||| |||||||||||||| ||||| Sbjct: 198 tggtacggcccagaccgtgtgaagtacctgggcccattctc 238
>emb|X16536.1|GMCAB5 G.max DNA for Cab5 Length = 1467 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| |||||| ||||||| ||||||| ||||| Sbjct: 472 tggtacggcccagaccgtgtcaagtacttgggcccattctc 512
>gb|U01964.1|GMU01964 Glycine max cv. Dare photosystem II type I chlorophyll a/b-binding protein (lhcb1*7) gene, complete cds Length = 1882 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| |||||| ||||||| ||||||| ||||| Sbjct: 899 tggtacggcccagaccgtgtcaagtacttgggcccattctc 939
>gb|M21396.1|SOYCBPA Soybean light-harvesting chlorophyll a/b-binding protein (LHCPII) mRNA, 3' end Length = 911 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| |||||| ||||||| ||||||| ||||| Sbjct: 87 tggtacggcccagaccgtgtcaagtacttgggcccattctc 127
>dbj|AB051209.1| Chlamydomonas reinhardtii mRNA for light-harvesting chlorophyll-a/b binding protein LhcII-3, complete cds Length = 1256 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| ||||| || |||| ||||||||| ||||| Sbjct: 134 tggtacggccccgaccgcccgaagttcctgggccccttctc 174
>dbj|AB006081.1| Fagus crenata mRNA for chlorophyll a/b-binding protein, complete cds Length = 1010 Score = 42.1 bits (21), Expect = 0.91 Identities = 36/41 (87%) Strand = Plus / Plus Query: 215 tggtacggccctgaccgtcccaagtacctgggcccgttctc 255 ||||||||||| |||||| ||||||| ||||||| ||||| Sbjct: 189 tggtacggcccagaccgtgtcaagtacttgggcccattctc 229
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gcaccgccccgcggcgcgat 136 |||||||||||||||||||| Sbjct: 690877 gcaccgccccgcggcgcgat 690896
>emb|X61915.1|PTCABP P.thunbergii cab gene Length = 5419 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 cctgaccgtcccaagtacctgggcccgttctc 255 |||||||| ||||||||||| ||||| ||||| Sbjct: 2425 cctgaccgccccaagtacctaggccccttctc 2456
>emb|BX640437.1| Bordetella bronchiseptica strain RB50, complete genome; segment 1/16 Length = 347356 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gcgtcggcgacttcggcggc 169 |||||||||||||||||||| Sbjct: 329638 gcgtcggcgacttcggcggc 329619
>emb|BX640423.1| Bordetella parapertussis strain 12822, complete genome; segment 1/14 Length = 348251 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gcgtcggcgacttcggcggc 169 |||||||||||||||||||| Sbjct: 334291 gcgtcggcgacttcggcggc 334272
>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12 Length = 349028 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gcgtcggcgacttcggcggc 169 |||||||||||||||||||| Sbjct: 79935 gcgtcggcgacttcggcggc 79916
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gcaccgccccgcggcgcgat 136 |||||||||||||||||||| Sbjct: 2011453 gcaccgccccgcggcgcgat 2011472
>emb|BX294149.1| Pirellula sp. strain 1 complete genome; segment 17/24 Length = 314250 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 gtcggcgacttcggcggccgcatc 175 |||||||||||||| ||||||||| Sbjct: 130021 gtcggcgacttcggtggccgcatc 130044
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ccccgcggcgcgatgacctc 142 |||||||||||||||||||| Sbjct: 428937 ccccgcggcgcgatgacctc 428918
>gb|AC158513.2| Mus musculus BAC clone RP24-404N1 from chromosome 9, complete sequence Length = 156478 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 atcctccagttgatctcactgagc 49 ||||||||| |||||||||||||| Sbjct: 90003 atcctccagatgatctcactgagc 89980
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gcaccgccccgcggcgcgat 136 |||||||||||||||||||| Sbjct: 791797 gcaccgccccgcggcgcgat 791778
>gb|AE006470.1| Chlorobium tepidum TLS, complete genome Length = 2154946 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 ccaccagcgaaatggccgcg 85 |||||||||||||||||||| Sbjct: 392001 ccaccagcgaaatggccgcg 391982
>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein Length = 2100 Score = 40.1 bits (20), Expect = 3.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 214 ctggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 |||||||||||| ||||| ||||||||| ||||| ||||||| Sbjct: 1026 ctggtacggccccgaccgcgtcaagtacctcggccccttctccg 1069
>emb|X57082.1|PSCABII P.sativum Cab II gene for chlorophyll a/b-binding protein Length = 2368 Score = 40.1 bits (20), Expect = 3.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 224 cctgaccgtcccaagtacctgggcccgttctc 255 |||||||||||||||||| |||| || ||||| Sbjct: 1057 cctgaccgtcccaagtacttgggtccattctc 1088
>emb|X12735.1|HVCAB2 Barley Cab-2 gene for major light-harvesting chlorophyll a/b- binding protein ( LHCP ) Length = 1030 Score = 40.1 bits (20), Expect = 3.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 214 ctggtacggccctgaccgtcccaagtacctgggccc 249 |||||||||||| ||||| ||||||||||||||| Sbjct: 321 ctggtacggcccggaccgggtcaagtacctgggccc 356
>emb|CT486009.11| Mouse DNA sequence from clone RP24-160E3 on chromosome 9, complete sequence Length = 193947 Score = 40.1 bits (20), Expect = 3.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 atcctccagttgatctcactgagc 49 ||||||||| |||||||||||||| Sbjct: 114631 atcctccagatgatctcactgagc 114608
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 3.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tcggcgacttcggcggccgc 172 |||||||||||||||||||| Sbjct: 1692847 tcggcgacttcggcggccgc 1692866
>emb|CT571263.1| Medicago truncatula chromosome 5 clone mte1-7c20, COMPLETE SEQUENCE Length = 127003 Score = 40.1 bits (20), Expect = 3.6 Identities = 35/40 (87%) Strand = Plus / Plus Query: 216 ggtacggccctgaccgtcccaagtacctgggcccgttctc 255 |||| ||||| ||||||||||||||| |||| || ||||| Sbjct: 51267 ggtatggcccagaccgtcccaagtacttgggtccattctc 51306
>gb|M29334.1|LGILHCPABP L.gibba light-harvesting chlorophyll a/b protein gene, complete cds Length = 1633 Score = 40.1 bits (20), Expect = 3.6 Identities = 38/44 (86%) Strand = Plus / Plus Query: 214 ctggtacggccctgaccgtcccaagtacctgggcccgttctccg 257 ||||||||| || ||||| ||||||||| ||||||||||||| Sbjct: 541 ctggtacgggcccgaccgcgtcaagtacctaggcccgttctccg 584
>dbj|AU066541.1| Chlamydomonas sp. HS-5 mRNA for hypothetical protein, NaCl+paraquat inducible, partial cds, clone:M27 Length = 687 Score = 40.1 bits (20), Expect = 3.6 Identities = 50/60 (83%) Strand = Plus / Plus Query: 218 tacggccctgaccgtcccaagtacctgggcccgttctccgagcagaccccgtcgtacctg 277 |||||||| ||||| |||||| |||||||| ||||| || | ||||||||||||||| Sbjct: 119 tacggccccgaccgcgccaagtggctgggccccttctcggatgacaccccgtcgtacctg 178 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,275,377 Number of Sequences: 3902068 Number of extensions: 1275377 Number of successful extensions: 30418 Number of sequences better than 10.0: 118 Number of HSP's better than 10.0 without gapping: 118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 29967 Number of HSP's gapped (non-prelim): 450 length of query: 277 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 255 effective length of database: 17,147,199,772 effective search space: 4372535941860 effective search space used: 4372535941860 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
