ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet34h04 |
|---|---|
| Clone Library Name | barley_pub |
>XYNA_THESA (P36917) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 1157 Score = 45.1 bits (105), Expect = 8e-05 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 5/123 (4%) Frame = +2 Query: 92 RVGDDD---NVILNPEFDSG-LDGWSGSGCKIELHDSLDDGKVLPATGKYFVAATGRTDT 259 RV DD N++ N +F+SG +DGW G L + + A G+Y + TGRT T Sbjct: 30 RVFADDTNINLVSNGDFESGTIDGWIKQG-NPTLAVTTEQ-----AIGQYSMKVTGRTQT 83 Query: 260 WNGVMQDVTARLQRKTAYEVAATVRL-SGASSVSPCEVRATLAVQTADGRQQYISVGKLQ 436 + G ++Q+ +Y V+ VRL SG +S +P + T+ + +G+ V + Q Sbjct: 84 YEGPAYSFLGKMQKGESYSVSLKVRLVSGQNSSNPL-ITVTMFREDDNGKHYDTIVWQKQ 142 Query: 437 ASD 445 S+ Sbjct: 143 VSE 145 Score = 42.7 bits (99), Expect = 4e-04 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 1/106 (0%) Frame = +2 Query: 110 NVILNPEFDSG-LDGWSGSGCKIELHDSLDDGKVLPATGKYFVAATGRTDTWNGVMQDVT 286 NVI N F++G GW G+G + + + +G Y + TGRT WNG D+T Sbjct: 196 NVIANETFENGNTSGWIGTGSSV-----VKAVYGVAHSGDYSLLTTGRTANWNGPSYDLT 250 Query: 287 ARLQRKTAYEVAATVRLSGASSVSPCEVRATLAVQTADGRQQYISV 424 ++ Y V V+ + +++AT V+ + YI V Sbjct: 251 GKIVPGQQYNVDFWVKFVNGNDTE--QIKAT--VKATSDKDNYIQV 292
>XYNX_CLOTM (P38535) Exoglucanase xynX precursor (EC 3.2.1.91)| (Exocellobiohydrolase) (1,4-beta-cellobiohydrolase) Length = 1087 Score = 43.5 bits (101), Expect = 2e-04 Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 2/114 (1%) Frame = +2 Query: 110 NVILNPEFDSG-LDGWSGSGCKIELHDSLDDGKVLPATGKYFVAATGRTDTWNGVMQDVT 286 N++ N +F+SG +DGW G L + ++ A G+Y + GRT T+ G Sbjct: 38 NLVSNGDFESGTIDGWIKQG-NPTLAATTEE-----AIGQYSMKVAGRTQTYEGPAYSFL 91 Query: 287 ARLQRKTAYEVAATVRL-SGASSVSPCEVRATLAVQTADGRQQYISVGKLQASD 445 ++Q+ +Y V+ VRL SG +S +P + T+ + +G+ V + Q S+ Sbjct: 92 GKMQKGQSYNVSLKVRLVSGQNSSNPL-ITVTMFREDDNGKHYDTIVWQKQVSE 144
>XYND_RUMFL (Q53317) Xylanase/beta-glucanase precursor [Includes:| Endo-1,4-beta-xylanase (EC 3.2.1.8) (Xylanase); Endo-beta-1,3-1,4 glucanase (EC 3.2.1.73) (1,3-1,4-beta-D-glucan 4-glucanohydrolase) (Lichenase)] Length = 802 Score = 41.6 bits (96), Expect = 0.001 Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Frame = +2 Query: 101 DDDNVILNPEFDSGLDGWSGSG-CKIELHDSLDDGKVLPATGKYFVAATGRTDTWNGVMQ 277 D++ L F+SG WSG G K++ D G + +GR DTWNG Sbjct: 256 DENGYYLKENFESGEGNWSGRGSAKVKSSSGYD--------GTKGIFVSGREDTWNGASI 307 Query: 278 DV-TARLQRKTAYEVAATVRLSGASSVSPCEVRATLAVQTADGRQQYISVGKLQAS 442 ++ + Y + V SSV + + TL ADG++ Y V + A+ Sbjct: 308 NLDELTFKAGETYSLGTAVMQDFESSV---DFKLTLQYTDADGKENYDEVKTVTAA 360
>XYNA_THENE (Q60042) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) (Endoxylanase) Length = 1055 Score = 32.3 bits (72), Expect = 0.56 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +2 Query: 131 FDSGLDGWSGSGCKIELHDSLDDGKVLPATGKYFVAATGRTDTWNGVMQDVTARLQRKTA 310 F+ DG S G + + S D + A G+Y + RT W+GV D+T ++ T Sbjct: 52 FEGNTDGASPFGKDVVVTASQD----VAADGEYSLKVENRTSVWDGVEIDLTGKVNTGTD 107 Query: 311 Y 313 Y Sbjct: 108 Y 108
>NOS3_PIG (Q28969) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 27.3 bits (59), Expect(2) = 1.3 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%) Frame = +2 Query: 254 DTWNGVMQDVTARLQRKTAYEVAATVRLSGA--SSVSPCEVRATLAVQTADGRQQ 412 D W G T ++KT EVA V++S + ++V P V+A++ + R Q Sbjct: 479 DPWKGSAAKGTGIARKKTFKEVANAVKISASLMATVMPKRVKASILYASETVRAQ 533 Score = 22.3 bits (46), Expect(2) = 1.3 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = +2 Query: 110 NVILNPEFDSGLDGWSGSGCK 172 N +L+P F D W GS K Sbjct: 467 NYVLSPAFRYQPDPWKGSAAK 487
>NOS3_BOVIN (P29473) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1204 Score = 25.8 bits (55), Expect(2) = 3.5 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Frame = +2 Query: 254 DTWNGVMQDVTARLQRKTAYEVAATVRLSGA--SSVSPCEVRATLAVQTADGRQQ 412 D W G ++KT EVA V++S + ++ V+AT+ + GR Q Sbjct: 479 DPWKGSATKGAGITRKKTFKEVANAVKISASLMGTLMAKRVKATILYASETGRAQ 533 Score = 22.3 bits (46), Expect(2) = 3.5 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = +2 Query: 110 NVILNPEFDSGLDGWSGSGCK 172 N IL+P F D W GS K Sbjct: 467 NYILSPAFRYQPDPWKGSATK 487
>GP112_HUMAN (Q8IZF6) Probable G-protein coupled receptor 112| Length = 2799 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%) Frame = +2 Query: 68 MGGNNNEGRVG----DDDNVILNPEFDSGLDGWSGSGCKIE 178 +GGN N G+V D +N +GL GW+ SGCK++ Sbjct: 2425 IGGNQNYGQVHCAFWDFEN--------NGLGGWNSSGCKVK 2457
>XYNA_THEMA (Q60037) Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) (Xylanase| A) (1,4-beta-D-xylan xylanohydrolase A) Length = 1059 Score = 29.6 bits (65), Expect = 3.6 Identities = 32/140 (22%), Positives = 57/140 (40%) Frame = +2 Query: 26 LSTSPVASTGPAMAMGGNNNEGRVGDDDNVILNPEFDSGLDGWSGSGCKIELHDSLDDGK 205 L+ S V S G + G+++ +L F+ +G G + L S D Sbjct: 29 LAASGVLSFGKEASSKGDSSL-------ETVLALSFEGTTEGVVPFGKDVVLTASQD--- 78 Query: 206 VLPATGKYFVAATGRTDTWNGVMQDVTARLQRKTAYEVAATVRLSGASSVSPCEVRATLA 385 + A G+Y + RT W+GV D+T +++ Y ++ V SS +P Sbjct: 79 -VAADGEYSLKVENRTSPWDGVEIDLTGKVKSGADYLLSFQVY---QSSDAPQLFNVVAR 134 Query: 386 VQTADGRQQYISVGKLQASD 445 + G + + + K+ SD Sbjct: 135 TEDEKGERYDVILDKVVVSD 154
>NOS3_HUMAN (P29474) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1202 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +2 Query: 227 YFVAATGR--TDTWNGVMQDVTARLQRKTAYEVAATVRLSGA--SSVSPCEVRATLAVQT 394 YF++ R D W G T ++KT EVA V++S + +V V+AT+ + Sbjct: 466 YFLSPAFRYQPDPWKGSAAKGTGITRKKTFKEVANAVKISASLMGTVMAKRVKATILYGS 525 Query: 395 ADGRQQ 412 GR Q Sbjct: 526 ETGRAQ 531
>NOS3_RAT (Q62600) Nitric-oxide synthase, endothelial (EC 1.14.13.39)| (EC-NOS) (NOS type III) (NOSIII) (Endothelial NOS) (eNOS) (Constitutive NOS) (cNOS) Length = 1201 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%) Frame = +2 Query: 227 YFVAATGR--TDTWNGVMQDVTARLQRKTAYEVAATVRLSGA--SSVSPCEVRATLAVQT 394 YF++ R D W G T ++KT EVA V++S + +V V+AT+ + Sbjct: 465 YFLSPAFRYQPDPWKGSAAKGTGITRKKTFKEVANAVKISASLMGTVMAKRVKATILYGS 524 Query: 395 ADGRQQ 412 GR Q Sbjct: 525 ETGRAQ 530
>G3PC_PETCR (P26519) Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (EC| 1.2.1.12) Length = 336 Score = 28.9 bits (63), Expect = 6.2 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = +2 Query: 200 GKVLPATGKYFVAATGRTDTWNGVMQDVTARLQRKTAY-EVAATVRLSGASSV 355 GKVLPA R T + + D+TARL++ Y E+ A ++ +S+ Sbjct: 219 GKVLPALNGKLTGMAFRVPTVDVSVVDLTARLEKAATYDEIKAAIKHESETSL 271
>G3P_DICDI (Q94469) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) (Fragment) Length = 299 Score = 28.9 bits (63), Expect = 6.2 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +2 Query: 200 GKVLPATGKYFVAATGRTDTWNGVMQDVTARLQRKTAYEVAATVRLSGASS 352 GKVLPA + R + + D+T RL++K YE V + + S Sbjct: 204 GKVLPALNGKLTGMSFRVPNCDVSVVDLTVRLEKKATYEEIKKVMKAASES 254
>G3P_ERYGR (Q00640) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) Length = 338 Score = 28.9 bits (63), Expect = 6.2 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Frame = +2 Query: 200 GKVLPATGKYFVAATGRTDTWNGVMQDVTARLQRKTAYE-------VAATVRLSGASSVS 358 GKV+PA R T N + D+T R+++ Y+ +AA L G S + Sbjct: 218 GKVIPALNGKLTGMAMRVPTANVSVVDLTCRIEKSATYDEIKKAIKIAAGNELQGILSYT 277 Query: 359 PCEVRAT 379 E+ +T Sbjct: 278 EDEIVST 284
>G3P_PICAN (O59841) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) Length = 335 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +2 Query: 200 GKVLPATGKYFVAATGRTDTWNGVMQDVTARLQRKTAYE-VAATVR 334 GKVLPA + R T + + D+T L++ T YE + AT++ Sbjct: 217 GKVLPALAGKLTGMSMRVPTTDVSVVDLTVNLKKPTTYEDICATMK 262
>RM19_MOUSE (Q9D338) 39S ribosomal protein L19, mitochondrial precursor (L19mt)| (MRP-L19) Length = 292 Score = 28.5 bits (62), Expect = 8.1 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 9/88 (10%) Frame = +2 Query: 23 RLSTSP--VASTGPAMAMGGNN-------NEGRVGDDDNVILNPEFDSGLDGWSGSGCKI 175 R+ T P STGP+ G + RV +D+ L+PEF + KI Sbjct: 35 RVCTGPSRFQSTGPSEPGGFKPPPKPVIVDRRRVPEDERRFLSPEFIPPRGRTNPLKFKI 94 Query: 176 ELHDSLDDGKVLPATGKYFVAATGRTDT 259 E D LD KVLP +++V + R T Sbjct: 95 ERKDMLDRRKVLPIP-EFYVGSILRVTT 121
>NSD1_HUMAN (Q96L73) Histone-lysine N-methyltransferase, H3 lysine-36 and H4| lysine-20 specific (EC 2.1.1.43) (H3-K36-HMTase) (H4-K20-HMTase) (Nuclear receptor binding SET domain containing protein 1) (NR-binding SET domain containing protein) (Androgen r Length = 2696 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/66 (30%), Positives = 28/66 (42%) Frame = +2 Query: 29 STSPVASTGPAMAMGGNNNEGRVGDDDNVILNPEFDSGLDGWSGSGCKIELHDSLDDGKV 208 + SPV + ++ G +N + GD NP G SG L L D + Sbjct: 946 TNSPVGVSKVLVSGGSTHNSEKKGDGTQNSANPSPSGGDSALSGE-LSASLPGLLSDKRD 1004 Query: 209 LPATGK 226 LPA+GK Sbjct: 1005 LPASGK 1010
>G3P_USTMA (P09317) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)| (GAPDH) Length = 337 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = +2 Query: 200 GKVLPATGKYFVAATGRTDTWNGVMQDVTARLQRKTAY-EVAATVR 334 GKV+P+ R T N + D+TARL++ +Y E+ A V+ Sbjct: 218 GKVIPSLNGKLTGMAFRVPTTNVSVVDLTARLEKGASYDEIKAEVK 263 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,125,513 Number of Sequences: 219361 Number of extensions: 803942 Number of successful extensions: 2658 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2655 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
