ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet34h04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469240.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2271 Score = 325 bits (164), Expect = 7e-86 Identities = 292/333 (87%), Gaps = 5/333 (1%) Strand = Plus / Plus Query: 103 cgacgacaacgtcatcctgaacccggagttcgacagcgggctggacggctggtccggcag 162 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 57 cgacgacaacatcatcctgaacccggagttcgacagcgggctggacaactggtccgggag 116 Query: 163 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcccggcgaccgg 222 ||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct: 117 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcgccgtcagcgg 176 Query: 223 caagtacttcgtggcggccacggggaggaccgacacgtggaacggcgtcatgcaggacgt 282 |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 177 caagtacttcgtggcggcgacggggaggacggacacgtggaacggcgtgcagcaggacgt 236 Query: 283 gacggcgcggctgcagcgcaagacggcctacgaggtcgccgccaccgtgcgcctctccgg 342 ||| ||||||||||||| ||| | ||||||||||||||||| |||||||||||||| Sbjct: 237 cacgtcgcggctgcagcggaagctgctgtacgaggtcgccgccacggtgcgcctctccgg 296 Query: 343 ggccagcagcgtc----tcgccgtgcgaggtccgcgccacgctcgccgtgcagaccgccg 398 ||| || ||| | ||||||||||||||||| ||||| |||||||||||| | ||| Sbjct: 297 cgcc-gccgcgacgccgtcgccgtgcgaggtccgggccaccgtcgccgtgcagaacaccg 355 Query: 399 acggcaggcagcagtacatctccgtcggcaagt 431 ||||| ||||||| |||||| ||||| ||||| Sbjct: 356 acggccggcagcaatacatcagcgtcgccaagt 388
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 325 bits (164), Expect = 7e-86 Identities = 292/333 (87%), Gaps = 5/333 (1%) Strand = Plus / Plus Query: 103 cgacgacaacgtcatcctgaacccggagttcgacagcgggctggacggctggtccggcag 162 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 26285291 cgacgacaacatcatcctgaacccggagttcgacagcgggctggacaactggtccgggag 26285350 Query: 163 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcccggcgaccgg 222 ||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct: 26285351 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcgccgtcagcgg 26285410 Query: 223 caagtacttcgtggcggccacggggaggaccgacacgtggaacggcgtcatgcaggacgt 282 |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 26285411 caagtacttcgtggcggcgacggggaggacggacacgtggaacggcgtgcagcaggacgt 26285470 Query: 283 gacggcgcggctgcagcgcaagacggcctacgaggtcgccgccaccgtgcgcctctccgg 342 ||| ||||||||||||| ||| | ||||||||||||||||| |||||||||||||| Sbjct: 26285471 cacgtcgcggctgcagcggaagctgctgtacgaggtcgccgccacggtgcgcctctccgg 26285530 Query: 343 ggccagcagcgtc----tcgccgtgcgaggtccgcgccacgctcgccgtgcagaccgccg 398 ||| || ||| | ||||||||||||||||| ||||| |||||||||||| | ||| Sbjct: 26285531 cgcc-gccgcgacgccgtcgccgtgcgaggtccgggccaccgtcgccgtgcagaacaccg 26285589 Query: 399 acggcaggcagcagtacatctccgtcggcaagt 431 ||||| ||||||| |||||| ||||| ||||| Sbjct: 26285590 acggccggcagcaatacatcagcgtcgccaagt 26285622
>gb|AC090683.7| Oryza sativa chromosome 3 BAC OSJNBa0035I24 genomic sequence, complete sequence Length = 134728 Score = 325 bits (164), Expect = 7e-86 Identities = 292/333 (87%), Gaps = 5/333 (1%) Strand = Plus / Minus Query: 103 cgacgacaacgtcatcctgaacccggagttcgacagcgggctggacggctggtccggcag 162 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 105349 cgacgacaacatcatcctgaacccggagttcgacagcgggctggacaactggtccgggag 105290 Query: 163 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcccggcgaccgg 222 ||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct: 105289 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcgccgtcagcgg 105230 Query: 223 caagtacttcgtggcggccacggggaggaccgacacgtggaacggcgtcatgcaggacgt 282 |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 105229 caagtacttcgtggcggcgacggggaggacggacacgtggaacggcgtgcagcaggacgt 105170 Query: 283 gacggcgcggctgcagcgcaagacggcctacgaggtcgccgccaccgtgcgcctctccgg 342 ||| ||||||||||||| ||| | ||||||||||||||||| |||||||||||||| Sbjct: 105169 cacgtcgcggctgcagcggaagctgctgtacgaggtcgccgccacggtgcgcctctccgg 105110 Query: 343 ggccagcagcgtc----tcgccgtgcgaggtccgcgccacgctcgccgtgcagaccgccg 398 ||| || ||| | ||||||||||||||||| ||||| |||||||||||| | ||| Sbjct: 105109 cgcc-gccgcgacgccgtcgccgtgcgaggtccgggccaccgtcgccgtgcagaacaccg 105051 Query: 399 acggcaggcagcagtacatctccgtcggcaagt 431 ||||| ||||||| |||||| ||||| ||||| Sbjct: 105050 acggccggcagcaatacatcagcgtcgccaagt 105018
>gb|AC116369.5| Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence Length = 122939 Score = 325 bits (164), Expect = 7e-86 Identities = 292/333 (87%), Gaps = 5/333 (1%) Strand = Plus / Plus Query: 103 cgacgacaacgtcatcctgaacccggagttcgacagcgggctggacggctggtccggcag 162 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 114750 cgacgacaacatcatcctgaacccggagttcgacagcgggctggacaactggtccgggag 114809 Query: 163 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcccggcgaccgg 222 ||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct: 114810 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcgccgtcagcgg 114869 Query: 223 caagtacttcgtggcggccacggggaggaccgacacgtggaacggcgtcatgcaggacgt 282 |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 114870 caagtacttcgtggcggcgacggggaggacggacacgtggaacggcgtgcagcaggacgt 114929 Query: 283 gacggcgcggctgcagcgcaagacggcctacgaggtcgccgccaccgtgcgcctctccgg 342 ||| ||||||||||||| ||| | ||||||||||||||||| |||||||||||||| Sbjct: 114930 cacgtcgcggctgcagcggaagctgctgtacgaggtcgccgccacggtgcgcctctccgg 114989 Query: 343 ggccagcagcgtc----tcgccgtgcgaggtccgcgccacgctcgccgtgcagaccgccg 398 ||| || ||| | ||||||||||||||||| ||||| |||||||||||| | ||| Sbjct: 114990 cgcc-gccgcgacgccgtcgccgtgcgaggtccgggccaccgtcgccgtgcagaacaccg 115048 Query: 399 acggcaggcagcagtacatctccgtcggcaagt 431 ||||| ||||||| |||||| ||||| ||||| Sbjct: 115049 acggccggcagcaatacatcagcgtcgccaagt 115081
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 325 bits (164), Expect = 7e-86 Identities = 292/333 (87%), Gaps = 5/333 (1%) Strand = Plus / Plus Query: 103 cgacgacaacgtcatcctgaacccggagttcgacagcgggctggacggctggtccggcag 162 |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 26376600 cgacgacaacatcatcctgaacccggagttcgacagcgggctggacaactggtccgggag 26376659 Query: 163 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcccggcgaccgg 222 ||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||| Sbjct: 26376660 cgggtgcaagatcgagctgcacgactcgctcgacgacggcaaggtgctcgccgtcagcgg 26376719 Query: 223 caagtacttcgtggcggccacggggaggaccgacacgtggaacggcgtcatgcaggacgt 282 |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| Sbjct: 26376720 caagtacttcgtggcggcgacggggaggacggacacgtggaacggcgtgcagcaggacgt 26376779 Query: 283 gacggcgcggctgcagcgcaagacggcctacgaggtcgccgccaccgtgcgcctctccgg 342 ||| ||||||||||||| ||| | ||||||||||||||||| |||||||||||||| Sbjct: 26376780 cacgtcgcggctgcagcggaagctgctgtacgaggtcgccgccacggtgcgcctctccgg 26376839 Query: 343 ggccagcagcgtc----tcgccgtgcgaggtccgcgccacgctcgccgtgcagaccgccg 398 ||| || ||| | ||||||||||||||||| ||||| |||||||||||| | ||| Sbjct: 26376840 cgcc-gccgcgacgccgtcgccgtgcgaggtccgggccaccgtcgccgtgcagaacaccg 26376898 Query: 399 acggcaggcagcagtacatctccgtcggcaagt 431 ||||| ||||||| |||||| ||||| ||||| Sbjct: 26376899 acggccggcagcaatacatcagcgtcgccaagt 26376931
>emb|X57144.1|HHRNAPOP H. halobium RNA polymerase subunit operon Length = 11208 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 115 catcctgaacccggagttcgacagcg 140 |||||||||| ||||||||||||||| Sbjct: 7848 catcctgaactcggagttcgacagcg 7873
>emb|AL939107.1|SCO939107 Streptomyces coelicolor A3(2) complete genome; segment 4/29 Length = 298450 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 379 gctcgccgtgcagaccgccgacggca 404 |||||||||||| ||||||||||||| Sbjct: 198651 gctcgccgtgcacaccgccgacggca 198676
>gb|AE005138.1| Halobacterium sp. NRC-1 section 169 of 170 of the complete genome Length = 10529 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 115 catcctgaacccggagttcgacagcg 140 |||||||||| ||||||||||||||| Sbjct: 3985 catcctgaactcggagttcgacagcg 3960
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 ccgacacgtggaacggcgtca 272 ||||||||||||||||||||| Sbjct: 2492588 ccgacacgtggaacggcgtca 2492608
>ref|NM_007442.1| Mus musculus aristaless 4 (Alx4), mRNA Length = 1770 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ctccggggccagcagcgtctc 357 ||||||||||||||||||||| Sbjct: 1179 ctccggggccagcagcgtctc 1199
>gb|BC049786.1| Mus musculus aristaless 4, mRNA (cDNA clone MGC:59384 IMAGE:6506755), complete cds Length = 7133 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ctccggggccagcagcgtctc 357 ||||||||||||||||||||| Sbjct: 3085 ctccggggccagcagcgtctc 3105
>emb|AJ012090.1|XSP012090 Xanthobacter sp. Py2 xamoA, xamoB, xamoC, xamoD, xamoE and xamoF genes Length = 4911 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 364 cgaggtccgcgccacgctcgc 384 ||||||||||||||||||||| Sbjct: 3796 cgaggtccgcgccacgctcgc 3816
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 190 gctcgacgacggcaaggtgct 210 ||||||||||||||||||||| Sbjct: 1251168 gctcgacgacggcaaggtgct 1251148
>dbj|AB221573.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12 days neonate,strain=BALB/c),(tissue_type=testis, dev_stage=adult, strain=C57BL/6J), clone:V01X007E15 Length = 1204 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ctccggggccagcagcgtctc 357 ||||||||||||||||||||| Sbjct: 988 ctccggggccagcagcgtctc 1008
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 376 cacgctcgccgtgcagaccgc 396 ||||||||||||||||||||| Sbjct: 8424029 cacgctcgccgtgcagaccgc 8424009 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 364 cgaggtccgcgccacgctcg 383 |||||||||||||||||||| Sbjct: 2913388 cgaggtccgcgccacgctcg 2913407 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 gaggtcgccgccaccgtgcg 333 |||||||||||||||||||| Sbjct: 2881316 gaggtcgccgccaccgtgcg 2881297
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 273 tgcaggacgtgacggcgcggc 293 ||||||||||||||||||||| Sbjct: 1532025 tgcaggacgtgacggcgcggc 1532005 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 383 gccgtgcagaccgccgacggc 403 ||||||||||||||||||||| Sbjct: 451463 gccgtgcagaccgccgacggc 451483
>gb|AF001465.1|MMAF001465 Mus musculus paired-type homeodomain transcription factor (Alx4) mRNA, complete cds Length = 1770 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ctccggggccagcagcgtctc 357 ||||||||||||||||||||| Sbjct: 1179 ctccggggccagcagcgtctc 1199
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 aggacgtgacggcgcggctgc 296 ||||||||||||||||||||| Sbjct: 2637780 aggacgtgacggcgcggctgc 2637760
>emb|AL732493.17| Mouse DNA sequence from clone RP23-358F6 on chromosome 2, complete sequence Length = 195388 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ctccggggccagcagcgtctc 357 ||||||||||||||||||||| Sbjct: 70307 ctccggggccagcagcgtctc 70327
>ref|XM_370433.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06930.4) partial mRNA Length = 1953 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 ggccgtgtcggcgacgacga 108 |||||||||||||||||||| Sbjct: 1875 ggccgtgtcggcgacgacga 1894
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 276 aggacgtgacggcgcggctg 295 |||||||||||||||||||| Sbjct: 1711435 aggacgtgacggcgcggctg 1711454
>gb|AY305378.1| Ralstonia eutropha H16 megaplasmid pHG1, complete sequence Length = 452156 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gtcggcgacgacgacaacgt 114 |||||||||||||||||||| Sbjct: 83582 gtcggcgacgacgacaacgt 83601
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gctcgacgacggcaaggtgc 209 |||||||||||||||||||| Sbjct: 1375318 gctcgacgacggcaaggtgc 1375299
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 89 ggccgtgtcggcgacgacgacaacgtca 116 |||||| ||||||||| ||||||||||| Sbjct: 1788640 ggccgtttcggcgacgccgacaacgtca 1788667
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 gctcgacgacggcaaggtgc 209 |||||||||||||||||||| Sbjct: 201043 gctcgacgacggcaaggtgc 201062
>emb|AL606631.2|OSJN00069 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0050O03, complete sequence Length = 140948 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 160 cagcgggtgcaagatcgagctgcacgac 187 ||||||||||| | |||||||||||||| Sbjct: 34220 cagcgggtgcaggttcgagctgcacgac 34193
>emb|AL583922.1|MLEPRTN6 Mycobacterium leprae strain TN complete genome; segment 6/10 Length = 318200 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 ccgtgcagaccgccgacggc 403 |||||||||||||||||||| Sbjct: 166521 ccgtgcagaccgccgacggc 166540
>emb|AJ131634.1|CBR131634 Caenorhabditis briggsae F18A1.6, F18A1.7, F18A1.5, lir-2, lir-1 and lin-26 genes Length = 27242 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tgtcggcgacgacgacaacg 113 |||||||||||||||||||| Sbjct: 18694 tgtcggcgacgacgacaacg 18675
>emb|AJ131134.1|CBR131134 Caenorhabditis briggsae F18A1.5, lir-2, lir-1, lin-26, F18A1.6 and F18A1.7 genes Length = 27242 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tgtcggcgacgacgacaacg 113 |||||||||||||||||||| Sbjct: 18694 tgtcggcgacgacgacaacg 18675
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 ccacgctcgccgtgcagaccgccg 398 |||| ||||||||||||||||||| Sbjct: 1853870 ccaccctcgccgtgcagaccgccg 1853893
>gb|AE012448.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 356 of 460 of the complete genome Length = 13170 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 aggtcgccgccaccgtgcgc 334 |||||||||||||||||||| Sbjct: 12958 aggtcgccgccaccgtgcgc 12977
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 aggtcgccgccaccgtgcgc 334 |||||||||||||||||||| Sbjct: 1024895 aggtcgccgccaccgtgcgc 1024876
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 160 cagcgggtgcaagatcgagctgcacgac 187 ||||||||||| | |||||||||||||| Sbjct: 954501 cagcgggtgcaggttcgagctgcacgac 954474
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gggccgtgtcggcgacgacg 107 |||||||||||||||||||| Sbjct: 6292305 gggccgtgtcggcgacgacg 6292324
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 gccgtgtcggcgacgacgacaacg 113 |||| ||||||||||||||||||| Sbjct: 1445048 gccgcgtcggcgacgacgacaacg 1445025
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 381 tcgccgtgcagaccgccgacggcaggcagcag 412 |||||| ||||||||||| ||||| ||||||| Sbjct: 3948666 tcgccgggcagaccgccggcggcatgcagcag 3948697
>dbj|AP002860.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0409B08 Length = 134673 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 gccgtgtcggcgacgacgacaacg 113 |||| ||||||||||||||||||| Sbjct: 10696 gccgcgtcggcgacgacgacaacg 10673
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gggccgtgtcggcgacgacg 107 |||||||||||||||||||| Sbjct: 86381 gggccgtgtcggcgacgacg 86400
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 tcctgaacccggagttcgac 136 |||||||||||||||||||| Sbjct: 239701 tcctgaacccggagttcgac 239720
>emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis gene cluster Length = 40579 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ctggtccggcagcgggtgca 170 |||||||||||||||||||| Sbjct: 27570 ctggtccggcagcgggtgca 27551
>gb|M55230.1|AFAHOXS Ralstonia eutropha NAD-reducing hydrogenase (hoxF), NAD-reducing hydrogenase (hoxU), NAD-reducing hydrogenase (hoxY), and NAD-reducing hydrogenase (hoxH) genes, complete cds Length = 5542 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 gtcggcgacgacgacaacgt 114 |||||||||||||||||||| Sbjct: 4576 gtcggcgacgacgacaacgt 4595
>dbj|AB070947.1| Streptomyces avermitilis polyketide-9 biosynthetic gene cluster Length = 24268 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 cgaggtccgcgccacgctcg 383 |||||||||||||||||||| Sbjct: 4481 cgaggtccgcgccacgctcg 4462
>dbj|AB070945.1| Streptomyces avermitilis polyketide-5 biosynthetic gene cluster Length = 25150 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 314 gaggtcgccgccaccgtgcg 333 |||||||||||||||||||| Sbjct: 13098 gaggtcgccgccaccgtgcg 13117
>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0044F08 Length = 141528 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 gccgtgtcggcgacgacgacaacg 113 |||| ||||||||||||||||||| Sbjct: 94669 gccgcgtcggcgacgacgacaacg 94646 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,256,864 Number of Sequences: 3902068 Number of extensions: 2256864 Number of successful extensions: 48709 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47059 Number of HSP's gapped (non-prelim): 1640 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
