ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet34b04 |
|---|---|
| Clone Library Name | barley_pub |
>PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transporting protein)| Length = 585 Score = 50.4 bits (119), Expect = 1e-06 Identities = 23/60 (38%), Positives = 38/60 (63%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPRGISLLTRMGIGMLVQVLTMGTASLIE 182 A+LG F T ++++ + +YDR V R+ T +G + + RMGIG+ V VL M A+++E Sbjct: 390 AALGTFDTASVIIWVPLYDRFIVPLARKFTGVDKGFTEIQRMGIGLFVSVLCMAAAAIVE 449
>CHL1_ARATH (Q05085) Nitrate/chlorate transporter| Length = 590 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPRGISLLTRMGIGMLVQVLTMGTASLIE 182 AS+ F +L+ VYDR+ ++ ++ P G+ L R+G+G+ + M A+L+E Sbjct: 382 ASMAVFYVGGLLLTTAVYDRVAIRLCKKLFNYPHGLRPLQRIGLGLFFGSMAMAVAALVE 441
>GCH2_YERPS (Q66AI6) GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)| Length = 196 Score = 31.2 bits (69), Expect = 0.79 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +3 Query: 51 VYDRLFVKAVRRHTKNPRGISLLTRMGIGMLVQV 152 +Y L +KAVR T NP+ + +LT+ GI ++ +V Sbjct: 136 MYKLLGIKAVRLLTNNPKKVEILTQAGINIVERV 169
>GCH2_YERPE (Q8ZEF0) GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)| Length = 196 Score = 31.2 bits (69), Expect = 0.79 Identities = 14/34 (41%), Positives = 23/34 (67%) Frame = +3 Query: 51 VYDRLFVKAVRRHTKNPRGISLLTRMGIGMLVQV 152 +Y L +KAVR T NP+ + +LT+ GI ++ +V Sbjct: 136 MYKLLGIKAVRLLTNNPKKVEILTQAGINIVERV 169
>SOX14_MOUSE (Q04892) Transcription factor SOX-14| Length = 240 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -2 Query: 188 PALDQRRRPHGQHLDQHPDAHPRQEADPSRVL 93 P +D+ +R QH+ +HPD R P +L Sbjct: 56 PYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLL 87
>SOX14_MACFA (P61259) Transcription factor SOX-14| Length = 240 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -2 Query: 188 PALDQRRRPHGQHLDQHPDAHPRQEADPSRVL 93 P +D+ +R QH+ +HPD R P +L Sbjct: 56 PYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLL 87
>SOX14_HUMAN (O95416) Transcription factor SOX-14| Length = 240 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -2 Query: 188 PALDQRRRPHGQHLDQHPDAHPRQEADPSRVL 93 P +D+ +R QH+ +HPD R P +L Sbjct: 56 PYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLL 87
>SOX14_CHICK (Q9W7R6) Transcription factor SOX-14 (SRY-related protein CH60)| Length = 240 Score = 28.9 bits (63), Expect = 3.9 Identities = 11/32 (34%), Positives = 17/32 (53%) Frame = -2 Query: 188 PALDQRRRPHGQHLDQHPDAHPRQEADPSRVL 93 P +D+ +R QH+ +HPD R P +L Sbjct: 56 PYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLL 87
>ADA2B_RABIT (O77830) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 394 Score = 28.9 bits (63), Expect = 3.9 Identities = 14/34 (41%), Positives = 24/34 (70%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPR 104 +SLG+F + L++I+VY R+++ A R H + PR Sbjct: 163 SSLGSFF-VPCLIMILVYLRIYLIAKRSHRRGPR 195
>IF39_HUMAN (P55884) Eukaryotic translation initiation factor 3 subunit 9| (eIF-3 eta) (eIF3 p116) (eIF3 p110) (eIF3b) (Prt1 homolog) (hPrt1) Length = 814 Score = 28.9 bits (63), Expect = 3.9 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +2 Query: 59 PALRQGRAEAHQEPERDQPPDADGH-RDAGPGADHGDG 169 P + RAE Q+ +PP A+G R AGPGA G Sbjct: 10 PEAAEERAEPGQQQPAAEPPPAEGLLRPAGPGAPEAAG 47
>VE4_HPV05 (P06924) Probable protein E4| Length = 245 Score = 28.9 bits (63), Expect = 3.9 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +2 Query: 68 RQGRAEAHQEPERDQPPDADGHRDAGPGADHG 163 R G +A ++PE P A+G + PG D G Sbjct: 115 RLGPLQADRDPEEGPQPPAEGEVEGHPGGDQG 146
>GCH2_ACIAD (Q6F7N4) GTP cyclohydrolase-2 (EC 3.5.4.25) (GTP cyclohydrolase II)| Length = 200 Score = 28.5 bits (62), Expect = 5.1 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%) Frame = +3 Query: 48 VVYDRLFVKAVRRHTKNPRGISLLTRMGIGMLVQV-LTMG 164 ++ D L VK V+ T NP + LT +GI ++ +V LT+G Sbjct: 136 IMLDHLQVKQVKLITNNPLKLKALTDLGINVIDRVPLTVG 175
>DICH_DROME (Q24533) SOX-domain protein dichaete (Protein fish-hook)| Length = 382 Score = 28.5 bits (62), Expect = 5.1 Identities = 12/38 (31%), Positives = 17/38 (44%) Frame = -2 Query: 188 PALDQRRRPHGQHLDQHPDAHPRQEADPSRVLGVPPHG 75 P +D+ +R H+ +HPD R P L P G Sbjct: 190 PFIDEAKRLRALHMKEHPDYKYRPRRKPKNPLTAGPQG 227
>MDN1_HUMAN (Q9NU22) Midasin (MIDAS-containing protein)| Length = 5596 Score = 28.1 bits (61), Expect = 6.7 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = +2 Query: 71 QGRAEAHQEPERDQPPD--ADGHRDAGPGADHGDGVADREP 187 Q +++ QEPE D A+G + GAD DG A + P Sbjct: 4932 QNESQSPQEPEEGPSEDDKAEGEEEMDTGADDQDGDAAQHP 4972
>ADA2B_HORSE (O77721) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 389 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPR 104 +S+G+F L++I+VY R+++ A R H + PR Sbjct: 163 SSIGSFFA-PCLIMILVYLRIYLIAKRSHLRGPR 195
>ADA2B_ERIEU (O19012) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 391 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPR 104 +S+G+F L++I+VY R+++ A R H + PR Sbjct: 163 SSIGSFFA-PCLIMILVYLRIYLIAKRSHCRGPR 195
>GDF6_MOUSE (P43028) Growth/differentiation factor 6 precursor (GDF-6)| (Growth/differentiation factor 16) Length = 454 Score = 27.7 bits (60), Expect = 8.7 Identities = 16/34 (47%), Positives = 16/34 (47%) Frame = -2 Query: 179 DQRRRPHGQHLDQHPDAHPRQEADPSRVLGVPPH 78 D RRRP GQH Q P P R L V PH Sbjct: 74 DLRRRPPGQHQGQEP---------PGRGLRVVPH 98
>ADA2B_CAVPO (Q60475) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) Length = 448 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPR 104 +S+G+F L++I+VY R+++ A R H + PR Sbjct: 175 SSIGSFFA-PCLIMILVYLRIYLIAKRSHRRGPR 207
>ADA2B_TALEU (O19091) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 397 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPR 104 +S+G+F L++I+VY R+++ A R H + PR Sbjct: 163 SSIGSFFA-PCLIMILVYLRIYLIAKRSHCRGPR 195
>ADA2B_BOVIN (O77700) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)| (Alpha-2B adrenoreceptor) (Fragment) Length = 392 Score = 27.7 bits (60), Expect = 8.7 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 3 ASLGAFVTLTMLVVIVVYDRLFVKAVRRHTKNPR 104 +S+G+F L++I+VY R+++ A R H + PR Sbjct: 163 SSIGSFFA-PCLIMILVYLRIYLIAKRSHCRGPR 195 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,010,050 Number of Sequences: 219361 Number of extensions: 341787 Number of successful extensions: 1730 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1631 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1725 length of database: 80,573,946 effective HSP length: 38 effective length of database: 72,238,228 effective search space used: 1733717472 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
