ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet34a09 |
|---|---|
| Clone Library Name | barley_pub |
>PFPI_PYRKO (Q5JGM7) Intracellular protease 1 (EC 3.2.-.-) (Intracellular| protease I) Length = 166 Score = 45.4 bits (106), Expect = 6e-05 Identities = 37/115 (32%), Positives = 54/115 (46%) Frame = +1 Query: 52 VLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTELPGH 231 VLIL D ED E PL+ + G V+ A+ + +T H GY + +L Sbjct: 3 VLILSADGFEDLELIYPLHRIKEEGHEVYVASFQRGK----ITGKH---GYTVNVDL--- 52 Query: 232 LFPMTAHFPADPASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 A DP +DALV+PGGR+ E + + AV++ + E +PV CH Sbjct: 53 -----AFDEVDPDEFDALVLPGGRAPEIVRLNEKAVAITKKM-FEDGKPVASICH 101
>Y1281_ARCFU (O28987) Hypothetical protein AF1281| Length = 168 Score = 42.7 bits (99), Expect = 4e-04 Identities = 36/115 (31%), Positives = 51/115 (44%) Frame = +1 Query: 52 VLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTELPGH 231 VLIL + ED E PLY L G+ V A+ + L GY + +L Sbjct: 3 VLILAENEFEDLELFYPLYRLREEGLEVKVAS-------SSLEVRVGKKGYQVRPDL--- 52 Query: 232 LFPMTAHFPADPASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 + Y LV+PGG+S E + + AV +V+ F +EL +PV CH Sbjct: 53 -----TYEDVKVEDYAGLVIPGGKSPERVRINERAVEIVKDF-LELGKPVAAICH 101
>PFPI_PYRHO (O59413) Intracellular protease 1 (EC 3.2.-.-) (Intracellular| protease I) Length = 166 Score = 41.6 bits (96), Expect = 9e-04 Identities = 35/115 (30%), Positives = 51/115 (44%) Frame = +1 Query: 52 VLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTELPGH 231 VL L + ED E P + L G V+ A+ + +T H GY + +L Sbjct: 3 VLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGT----ITGKH---GYSVKVDL--- 52 Query: 232 LFPMTAHFPADPASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 +P +DALV+PGGR+ E + + AVS+ R E +PV CH Sbjct: 53 -----TFDKVNPEEFDALVLPGGRAPERVRLNEKAVSIARKMFSE-GKPVASICH 101
>PFPI_PYRFU (Q51732) Intracellular protease 1 (EC 3.2.-.-) (Intracellular| protease I) Length = 166 Score = 41.6 bits (96), Expect = 9e-04 Identities = 34/115 (29%), Positives = 50/115 (43%) Frame = +1 Query: 52 VLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTELPGH 231 +L L + ED E P + L G V+ A+ K +T H GY + +L Sbjct: 3 ILFLSANEFEDVELIYPYHRLKEEGHEVYIASFEKG----VITGKH---GYSVKVDL--- 52 Query: 232 LFPMTAHFPADPASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 +P +DALV+PGGR+ E + + AV + R E +PV CH Sbjct: 53 -----TFDEVNPDEFDALVLPGGRAPERVRLNEKAVEIARKMFTE-GKPVATICH 101
>PFPI_PYRAB (Q9V1F8) Intracellular protease 1 (EC 3.2.-.-) (Intracellular| protease I) Length = 166 Score = 41.6 bits (96), Expect = 9e-04 Identities = 36/115 (31%), Positives = 51/115 (44%) Frame = +1 Query: 52 VLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTELPGH 231 VLIL D ED E P + L G V A+ + +T H GY + +L Sbjct: 3 VLILSADQFEDVELIYPYHRLKEEGHEVLVASFKRG----VITGKH---GYTVNVDL--- 52 Query: 232 LFPMTAHFPADPASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 A +P +DALV+PGGR+ E + + AV + + E +PV CH Sbjct: 53 -----AFEEVNPDEFDALVLPGGRAPERVRLNEKAVEIAKKMFSE-GKPVASICH 101
>YRAA_BACSU (O06006) Hypothetical protein yraA| Length = 169 Score = 36.2 bits (82), Expect = 0.037 Identities = 31/118 (26%), Positives = 48/118 (40%) Frame = +1 Query: 43 SRNVLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTEL 222 S+ + +L D ED E P+ A G V A+ G ++ + Sbjct: 2 SKKIAVLVTDQFEDIEYTSPVKAYEEAGYSV--------------VAIDLEAGKEVTGKH 47 Query: 223 PGHLFPMTAHFPADPASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 + A D + +DAL++PGG S + L D +AF VE ++PV CH Sbjct: 48 GEKVKIDKAISDVDASDFDALLIPGGFSPDLLRADDRPGEFAKAF-VENKKPVFAICH 104
>YHBO_ECOLI (P45470) Protein yhbO| Length = 172 Score = 35.8 bits (81), Expect = 0.049 Identities = 19/44 (43%), Positives = 25/44 (56%) Frame = +1 Query: 265 PASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 PA +DAL++PGG S + L D V+ R F V +PV CH Sbjct: 63 PAEFDALLLPGGHSPDYLRGDNRFVTFTRDF-VNSGKPVFAICH 105
>GS18_BACSU (P80876) General stress protein 18 (GSP18)| Length = 171 Score = 35.0 bits (79), Expect = 0.083 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +1 Query: 268 ASYDALVVPGGRSVEPLSTDADAVSLVRAFAVELRRPVLLTCH 396 + +DAL++PGG S + L D V +AF + ++PV CH Sbjct: 63 SDFDALLIPGGFSPDQLRADDRFVQFTKAFMTD-KKPVFAICH 104
>DEGT_BACST (P15263) Pleiotropic regulatory protein| Length = 372 Score = 33.5 bits (75), Expect = 0.24 Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 15/106 (14%) Frame = +1 Query: 46 RNVLILCGDYMEDYEAAVPLYALAALGVG-------VHCA--APGKSPGDACLTAVHDFL 198 R+ + GDY++ EA + Y+ A G+G +H A A G PGD +T F Sbjct: 28 RSSRFILGDYVKKLEADIAAYSRAKHGIGCGNGSDAIHIALQAAGVGPGDEVITTAFTFF 87 Query: 199 GYDLYTELPG------HLFPMTAHFPADPASYDALVVPGGRSVEPL 318 G + P+T F DPA +A V +++ P+ Sbjct: 88 ATAGSIARAGAKPVFVDIDPVT--FNIDPAQVEAAVTEKTKAIIPV 131
>ELBB_SHIFL (P0ABU6) Enhancing lycopene biosynthesis protein 2| Length = 217 Score = 32.7 bits (73), Expect = 0.41 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Frame = +1 Query: 52 VLILCGDY--MEDYEAAVPLYALAALGVGVHCAAPGKSPGDA-------CLTAVHDFLGY 204 +L CG Y E +EA + L A++ G C AP K D +T + L Sbjct: 7 ILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVL-I 65 Query: 205 DLYTELPGHLFPMTAHFPADPASYDALVVPGG 300 + G + P+ AD A DAL+VPGG Sbjct: 66 EAARITRGEIRPLAQ---ADAAELDALIVPGG 94
>ELBB_ECOLI (P0ABU5) Enhancing lycopene biosynthesis protein 2 (Sigma| cross-reacting protein 27A) (SCRP-27A) Length = 217 Score = 32.7 bits (73), Expect = 0.41 Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 9/92 (9%) Frame = +1 Query: 52 VLILCGDY--MEDYEAAVPLYALAALGVGVHCAAPGKSPGDA-------CLTAVHDFLGY 204 +L CG Y E +EA + L A++ G C AP K D +T + L Sbjct: 7 ILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVL-I 65 Query: 205 DLYTELPGHLFPMTAHFPADPASYDALVVPGG 300 + G + P+ AD A DAL+VPGG Sbjct: 66 EAARITRGEIRPLAQ---ADAAELDALIVPGG 94
>STFR_ECOLI (P76072) Side tail fiber protein homolog from lambdoid prophage Rac| Length = 1120 Score = 30.4 bits (67), Expect = 2.0 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%) Frame = -2 Query: 386 SRTGLRSSTANALTSDT-ASASVLSGSTERPPGTTKASYEAGSAGKWAVIGKR*PGSSV* 210 S++ +S A TS+T ASAS+ S +T TTKAS A SA + A K SS Sbjct: 193 SKSAAATSAGAAKTSETNASASLQSAATSASTATTKASEAATSA-RDAAASKEAAKSSET 251 Query: 209 RS*PRKSWTAVRQASPGDLPGAAQWTPTPSAAS 111 + S A + G+ AA+ + T + +S Sbjct: 252 NASSSASSAASSATAAGNSAKAAKTSETNARSS 284
>PATR_STRAW (Q82FJ1) Putative phenylalanine aminotransferase (EC 2.6.1.-)| Length = 359 Score = 30.4 bits (67), Expect = 2.0 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Frame = +1 Query: 25 STMGSSSRNVLILCGDYMEDYEA--AVPLYALA----ALGVGVHCAAPGKSPGDACLTAV 186 S++GS +R + C M + VPL LA ++GV PGD + A Sbjct: 53 SSVGSFNRYPDMACSGLMSELSERFGVPLSHLATGTGSVGVAQQLLQATSGPGDEVIYAW 112 Query: 187 HDFLGYDLYTELPGHLFPMTAHFPADPASYDAL 285 F Y + T++ G P D DA+ Sbjct: 113 RSFEAYPIITQVSGATSVQVPLTPGDVHDLDAM 145
>Y1560_STAES (Q8CRV8) Hypothetical protein SE_1560| Length = 172 Score = 30.4 bits (67), Expect = 2.0 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Frame = +1 Query: 43 SRNVLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTEL 222 ++ V I+ D ED E P AL G GD TA H+ +G Sbjct: 2 AKKVAIILADEFEDIELTSPKEALENAGFETEVI------GD---TANHEVVGKH----- 47 Query: 223 PGHLFPMTAHFP-ADPASYDALVVPGGRSVEPLSTDAD 333 G + A P +YDAL++PGG S + L D + Sbjct: 48 -GEKVTVDVSIADAKPENYDALLIPGGFSPDHLRGDEE 84
>Y1413_STAEQ (Q5HN59) Hypothetical protein SERP1413| Length = 172 Score = 30.4 bits (67), Expect = 2.0 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 1/98 (1%) Frame = +1 Query: 43 SRNVLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTEL 222 ++ V I+ D ED E P AL G GD TA H+ +G Sbjct: 2 AKKVAIILADEFEDIELTSPKEALENAGFETEVI------GD---TANHEVVGKH----- 47 Query: 223 PGHLFPMTAHFP-ADPASYDALVVPGGRSVEPLSTDAD 333 G + A P +YDAL++PGG S + L D + Sbjct: 48 -GEKVTVDVSIADAKPENYDALLIPGGFSPDHLRGDEE 84
>SANT_PLAFN (P04928) S-antigen protein precursor| Length = 309 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/52 (40%), Positives = 23/52 (44%) Frame = -2 Query: 374 LRSSTANALTSDTASASVLSGSTERPPGTTKASYEAGSAGKWAVIGKR*PGS 219 L+S A A SD A A TE P GT EAG+ G G PGS Sbjct: 239 LKSDEAEARKSDEAEARKSEAGTEGPKGTGGPGSEAGTEGPKGTGG---PGS 287
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 29.3 bits (64), Expect = 4.5 Identities = 17/44 (38%), Positives = 25/44 (56%) Frame = -2 Query: 386 SRTGLRSSTANALTSDTASASVLSGSTERPPGTTKASYEAGSAG 255 S + SSTA++ S TAS++ S ST++ TTK+ S G Sbjct: 505 SSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTKSETTTSSDG 548
>Y1625_STAS1 (Q49WT1) Hypothetical protein SSP1625| Length = 172 Score = 29.3 bits (64), Expect = 4.5 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 1/98 (1%) Frame = +1 Query: 43 SRNVLILCGDYMEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTEL 222 ++ V I+ D ED E P AL G GD T H+ +G Sbjct: 2 TKKVAIILADEFEDIELTSPKEALENAGFETEVI------GD---TEKHELVGKH----- 47 Query: 223 PGHLFPMTAHFP-ADPASYDALVVPGGRSVEPLSTDAD 333 G + A P +YDAL++PGG S + L D + Sbjct: 48 -GEKVTVDVSIADAKPENYDALLIPGGFSPDHLRGDEE 84
>GUAA_DICDI (P32073) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 718 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -2 Query: 392 HVSRTGLRSSTANALTSDTASASVLSGSTERPPGTTK 282 ++S L+ T N LTS + VL T +PPGTT+ Sbjct: 680 NISFDCLQEITNNILTSVNGISKVLFDCTSKPPGTTE 716
>GLNA_HALSA (Q9HNI2) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 454 Score = 28.9 bits (63), Expect = 5.9 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Frame = +1 Query: 100 PLYALAA-LGVGVHCAAPGKSPGDACLTAVHDFL-----GYDLYTELPGHLFPMTAHFPA 261 P ALAA + G+ PGDA +++F Y + T LPGHL + Sbjct: 353 PYLALAAVIAAGLDGIDTDADPGDAVREDIYEFDEDKRDAYGIDT-LPGHLGDAVTALES 411 Query: 262 DPASYDAL 285 DP DAL Sbjct: 412 DPVMQDAL 419
>MTCH1_MOUSE (Q791T5) Mitochondrial carrier homolog 1 (Mitochondrial| carrier-like protein 1) Length = 389 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Frame = -1 Query: 435 AAHGARGGQKKLAVAREQDRPAQLHRERP-HQRHRVGVRAERLHGAPAWDDQG 280 A GARGG AR +D P HR P H R A R+ G P G Sbjct: 24 AGAGARGGAPAGVEARARD-PPPAHRAHPRHPRPAAQPSARRMDGGPGAPGSG 75
>SF3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) (146 kDa nuclear protein) Length = 1307 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Frame = -2 Query: 317 SGSTERPPGTTKASYEAGSAGKWAVIGKR*PGSSV*RS*PRK--SWTAVRQASPGDLPGA 144 + S +PP K +W G + PGS+ P+K SW + +PG P + Sbjct: 187 ASSAAQPPSKRKR--------RWDQTGDQTPGST-----PKKLSSWDQA-EVTPGHTPSS 232 Query: 143 AQWTPTPSAA 114 +W TP A Sbjct: 233 LRWDETPGRA 242
>HXD13_MOUSE (P70217) Homeobox protein Hox-D13 (Hox-4.8)| Length = 339 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/65 (30%), Positives = 32/65 (49%) Frame = -2 Query: 353 ALTSDTASASVLSGSTERPPGTTKASYEAGSAGKWAVIGKR*PGSSV*RS*PRKSWTAVR 174 A + A+A+ + ST PGT++ + + S+ AVI R P + V + P + A Sbjct: 54 AAAAAAAAAAAAAASTFAYPGTSERTGSSSSSSSSAVIATR-PEAPVAKECPAPAAAATA 112 Query: 173 QASPG 159 A PG Sbjct: 113 AAPPG 117
>DPOE_USTMA (Q4PFV5) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2305 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 7/42 (16%) Frame = -1 Query: 351 PHQRHRVGVRAERLHGAPAWDDQGVVR-------SRVCREVG 247 PH R +G R + +H WD+Q + S VC EVG Sbjct: 1702 PHPRPDLGGREQDIHAQSRWDEQESLEISHAGAYSTVCLEVG 1743
>SUFU_MOUSE (Q9Z0P7) Suppressor of fused homolog| Length = 484 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = -1 Query: 333 VGVRAERLHGAPAWDDQGVVR-SRVCREVGGHW 238 VGV E LH A W+ QG++ R GG W Sbjct: 201 VGVCTEELHSAQQWNGQGILELLRTVPIAGGPW 233
>SUFU_HUMAN (Q9UMX1) Suppressor of fused homolog (SUFUH)| Length = 484 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%) Frame = -1 Query: 333 VGVRAERLHGAPAWDDQGVVR-SRVCREVGGHW 238 VGV E LH A W+ QG++ R GG W Sbjct: 201 VGVCTEELHSAQQWNGQGILELLRTVPIAGGPW 233
>MURA3_SYMTH (Q67J65) UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3 (EC| 2.5.1.7) (Enoylpyruvate transferase 3) (UDP-N-acetylglucosamine enolpyruvyl transferase 3) (EPT 3) Length = 424 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 354 RPHQRHRVGVRAERLHGAPAWDDQGVVRSRVCREVGGH 241 RP +H G+ A GA W D+G++R+R R G H Sbjct: 123 RPVDQHFKGLSAL---GAEIWMDRGIIRARARRLRGAH 157
>Y964_SYNY3 (P72855) Hypothetical protein slr0964| Length = 308 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = +1 Query: 76 MEDYEAAVPLYALAALGVGVHCAAPGKSPGDACLTAVHDFLGYDLYTELPGHLFP 240 +++ + AV + LA LG+G C PGD+CL L ++L LP + FP Sbjct: 210 LKNLDLAVSMMGLANLGLGYLCFV----PGDSCLLGP---LLWNLAPWLPDNQFP 257 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,180,690 Number of Sequences: 219361 Number of extensions: 906000 Number of successful extensions: 3573 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3564 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
