ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet34a09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 159 bits (80), Expect = 9e-36 Identities = 151/174 (86%), Gaps = 3/174 (1%) Strand = Plus / Plus Query: 62 tgtgcggcgactacatggaggactacgaggcggccgtgcccttgtacgcgctggctgcac 121 ||||||||||||||||||||||||||||||| |||||||| || |||||||| || || Sbjct: 160998 tgtgcggcgactacatggaggactacgaggccgccgtgccgttctacgcgctcgccgcgt 161057 Query: 122 tcggcgtgggcgtccactgcgcggcgccgggcaagt---cccccggcgacgcctgcctga 178 ||||||| | |||| |||||| |||||||| ||| ||||||||||||||||||| | Sbjct: 161058 tcggcgtcgccgtcgactgcgtcgcgccggggaagaagccccccggcgacgcctgcctca 161117 Query: 179 ccgccgtccacgacttcctcggctacgacctctacacggagctaccgggtcacc 232 ||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||| Sbjct: 161118 ccgccgtccacgagttcctcggccacgacctctacaccgagctcccgggccacc 161171 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 388 acgtgccacagccagcttcttctggccgccgcgggcgccatgggcggcgtc 438 |||||||| |||||||| || || |||||||||||||||||| |||||||| Sbjct: 161354 acgtgccatagccagctgctgctcgccgccgcgggcgccatgcgcggcgtc 161404
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 159 bits (80), Expect = 9e-36 Identities = 151/174 (86%), Gaps = 3/174 (1%) Strand = Plus / Plus Query: 62 tgtgcggcgactacatggaggactacgaggcggccgtgcccttgtacgcgctggctgcac 121 ||||||||||||||||||||||||||||||| |||||||| || |||||||| || || Sbjct: 21637479 tgtgcggcgactacatggaggactacgaggccgccgtgccgttctacgcgctcgccgcgt 21637538 Query: 122 tcggcgtgggcgtccactgcgcggcgccgggcaagt---cccccggcgacgcctgcctga 178 ||||||| | |||| |||||| |||||||| ||| ||||||||||||||||||| | Sbjct: 21637539 tcggcgtcgccgtcgactgcgtcgcgccggggaagaagccccccggcgacgcctgcctca 21637598 Query: 179 ccgccgtccacgacttcctcggctacgacctctacacggagctaccgggtcacc 232 ||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||| Sbjct: 21637599 ccgccgtccacgagttcctcggccacgacctctacaccgagctcccgggccacc 21637652 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 388 acgtgccacagccagcttcttctggccgccgcgggcgccatgggcggcgtc 438 |||||||| |||||||| || || |||||||||||||||||| |||||||| Sbjct: 21637835 acgtgccatagccagctgctgctcgccgccgcgggcgccatgcgcggcgtc 21637885
>dbj|AK058631.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-C10, full insert sequence Length = 1357 Score = 159 bits (80), Expect = 9e-36 Identities = 151/174 (86%), Gaps = 3/174 (1%) Strand = Plus / Plus Query: 62 tgtgcggcgactacatggaggactacgaggcggccgtgcccttgtacgcgctggctgcac 121 ||||||||||||||||||||||||||||||| |||||||| || |||||||| || || Sbjct: 97 tgtgcggcgactacatggaggactacgaggccgccgtgccgttctacgcgctcgccgcgt 156 Query: 122 tcggcgtgggcgtccactgcgcggcgccgggcaagt---cccccggcgacgcctgcctga 178 ||||||| | |||| |||||| |||||||| ||| ||||||||||||||||||| | Sbjct: 157 tcggcgtcgccgtcgactgcgtcgcgccggggaagaagccccccggcgacgcctgcctca 216 Query: 179 ccgccgtccacgacttcctcggctacgacctctacacggagctaccgggtcacc 232 ||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||| Sbjct: 217 ccgccgtccacgagttcctcggccacgacctctacaccgagctcccgggccacc 270 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 388 acgtgccacagccagcttcttctggccgccgcgggcgccatgggcggcgtc 438 |||||||| |||||||| || || |||||||||||||||||| |||||||| Sbjct: 453 acgtgccatagccagctgctgctcgccgccgcgggcgccatgcgcggcgtc 503
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 159 bits (80), Expect = 9e-36 Identities = 151/174 (86%), Gaps = 3/174 (1%) Strand = Plus / Plus Query: 62 tgtgcggcgactacatggaggactacgaggcggccgtgcccttgtacgcgctggctgcac 121 ||||||||||||||||||||||||||||||| |||||||| || |||||||| || || Sbjct: 21947678 tgtgcggcgactacatggaggactacgaggccgccgtgccgttctacgcgctcgccgcgt 21947737 Query: 122 tcggcgtgggcgtccactgcgcggcgccgggcaagt---cccccggcgacgcctgcctga 178 ||||||| | |||| |||||| |||||||| ||| ||||||||||||||||||| | Sbjct: 21947738 tcggcgtcgccgtcgactgcgtcgcgccggggaagaagccccccggcgacgcctgcctca 21947797 Query: 179 ccgccgtccacgacttcctcggctacgacctctacacggagctaccgggtcacc 232 ||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||| Sbjct: 21947798 ccgccgtccacgagttcctcggccacgacctctacaccgagctcccgggccacc 21947851 Score = 61.9 bits (31), Expect = 2e-06 Identities = 46/51 (90%) Strand = Plus / Plus Query: 388 acgtgccacagccagcttcttctggccgccgcgggcgccatgggcggcgtc 438 |||||||| |||||||| || || |||||||||||||||||| |||||||| Sbjct: 21948034 acgtgccatagccagctgctgctcgccgccgcgggcgccatgcgcggcgtc 21948084
>gb|BT016784.1| Zea mays clone Contig617 mRNA sequence Length = 1616 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Plus Query: 64 tgcggcgactacatggaggactacgaggc 92 ||||||||||||||||||||||||||||| Sbjct: 152 tgcggcgactacatggaggactacgaggc 180
>gb|AY104354.1| Zea mays PCO108571 mRNA sequence Length = 1633 Score = 56.0 bits (28), Expect = 1e-04 Identities = 28/28 (100%) Strand = Plus / Plus Query: 64 tgcggcgactacatggaggactacgagg 91 |||||||||||||||||||||||||||| Sbjct: 126 tgcggcgactacatggaggactacgagg 153
>ref|XM_474305.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1164 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 64 tgcggcgactacatggaggactacgaggc 92 ||||| ||||||||||||||||||||||| Sbjct: 28 tgcggagactacatggaggactacgaggc 56
>dbj|AK100753.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118M23, full insert sequence Length = 1368 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 64 tgcggcgactacatggaggactacgaggc 92 ||||| ||||||||||||||||||||||| Sbjct: 88 tgcggagactacatggaggactacgaggc 116
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 64 tgcggcgactacatggaggactacgagg 91 ||||| |||||||||||||||||||||| Sbjct: 28969 tgcggagactacatggaggactacgagg 28942
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 64 tgcggcgactacatggaggactacgagg 91 ||||| |||||||||||||||||||||| Sbjct: 34304566 tgcggagactacatggaggactacgagg 34304539
>gb|DQ351282.1| Oryza rufipogon unknown gene Length = 14907 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 64 tgcggcgactacatggaggactacgagg 91 ||||| |||||||||||||||||||||| Sbjct: 12148 tgcggagactacatggaggactacgagg 12121
>emb|AL732356.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0624F09, complete sequence Length = 95419 Score = 48.1 bits (24), Expect = 0.024 Identities = 27/28 (96%) Strand = Plus / Minus Query: 64 tgcggcgactacatggaggactacgagg 91 ||||| |||||||||||||||||||||| Sbjct: 76884 tgcggagactacatggaggactacgagg 76857
>ref|NM_111140.4| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT3G02720 mRNA, complete cds Length = 1415 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 101 ttgtgcggtgactacatggaagactacgagg 131
>ref|XM_481723.1| Oryza sativa (japonica cultivar-group), mRNA Length = 925 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 410 tggccgccgcgggcgccatgggcggcg 436 ||||||||||||||||||||| ||||| Sbjct: 477 tggccgccgcgggcgccatggacggcg 451
>gb|AC018363.8|ATAC018363 Arabidopsis thaliana chromosome III BAC F13E7 genomic sequence, complete sequence Length = 100559 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Minus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 99948 ttgtgcggtgactacatggaagactacgagg 99918
>gb|AC021640.7|ATAC021640 Arabidopsis thaliana chromosome III BAC F16B3 genomic sequence, complete sequence Length = 103904 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 102004 ttgtgcggtgactacatggaagactacgagg 102034
>gb|BT000947.1| Arabidopsis thaliana clone C104919 unknown protein (At3g02720) mRNA, complete cds Length = 1198 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 28 ttgtgcggtgactacatggaagactacgagg 58
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 410 tggccgccgcgggcgccatgggcggcg 436 ||||||||||||||||||||| ||||| Sbjct: 15001999 tggccgccgcgggcgccatggacggcg 15001973
>emb|BX822658.1|CNS0A5YZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB56ZG12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1427 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 98 ttgtgcggtgactacatggaagactacgagg 128
>emb|BX824747.1|CNS0A5KB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH6ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1415 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 81 ttgtgcggtgactacatggaagactacgagg 111
>emb|BX824730.1|CNS0A5RJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH68ZF02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1386 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 101 ttgtgcggtgactacatggaagactacgagg 131
>emb|BX823263.1|CNS0A5CL Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1365 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 53 ttgtgcggtgactacatggaagactacgagg 83
>emb|BX822838.1|CNS0A4PN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB68ZA03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1382 Score = 46.1 bits (23), Expect = 0.096 Identities = 29/31 (93%) Strand = Plus / Plus Query: 61 ttgtgcggcgactacatggaggactacgagg 91 |||||||| ||||||||||| |||||||||| Sbjct: 83 ttgtgcggtgactacatggaagactacgagg 113
>dbj|AK105009.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-B03, full insert sequence Length = 1455 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 410 tggccgccgcgggcgccatgggcggcg 436 ||||||||||||||||||||| ||||| Sbjct: 977 tggccgccgcgggcgccatggacggcg 951
>dbj|AP004621.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689D06 Length = 146551 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 410 tggccgccgcgggcgccatgggcggcg 436 ||||||||||||||||||||| ||||| Sbjct: 913 tggccgccgcgggcgccatggacggcg 887
>dbj|AP005866.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0076O03 Length = 140823 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 410 tggccgccgcgggcgccatgggcggcg 436 ||||||||||||||||||||| ||||| Sbjct: 134528 tggccgccgcgggcgccatggacggcg 134502
>dbj|AK106063.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G07, full insert sequence Length = 925 Score = 46.1 bits (23), Expect = 0.096 Identities = 26/27 (96%) Strand = Plus / Minus Query: 410 tggccgccgcgggcgccatgggcggcg 436 ||||||||||||||||||||| ||||| Sbjct: 477 tggccgccgcgggcgccatggacggcg 451
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 159 ccccggcgacgcctgcctgaccgccg 184 ||||||||||||||||| |||||||| Sbjct: 3404816 ccccggcgacgcctgcccgaccgccg 3404841
>gb|AC108773.9| Mus musculus chromosome 5, clone RP23-118L1, complete sequence Length = 222706 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 403 cttcttctggccgccgcgggcgcca 427 |||||||||||||||| |||||||| Sbjct: 62163 cttcttctggccgccgagggcgcca 62139
>gb|AE004925.1| Pseudomonas aeruginosa PAO1, section 486 of 529 of the complete genome Length = 10689 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Minus Query: 330 cgacgcggtgtcgctggtgagggcgttcgcggtggagctgcgcag 374 |||||||||| |||||||| | | | ||||| ||||||||||||| Sbjct: 4209 cgacgcggtggcgctggtgcgcgaggtcgcgatggagctgcgcag 4165
>gb|AY632421.1| Streptomyces viridochromogenes PTT biosynthetic gene Length = 40241 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cggtgtcgctggtgagggcg 354 |||||||||||||||||||| Sbjct: 18941 cggtgtcgctggtgagggcg 18922
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gccagcttcttctggccgcc 417 |||||||||||||||||||| Sbjct: 1981725 gccagcttcttctggccgcc 1981706
>gb|AE009340.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 110 of 187 of the complete sequence Length = 12039 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cgcgggcgccatgggcggcg 436 |||||||||||||||||||| Sbjct: 2578 cgcgggcgccatgggcggcg 2559
>gb|AE008275.1| Agrobacterium tumefaciens str. C58 linear chromosome, section 79 of 187 of the complete sequence Length = 6671 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 417 cgcgggcgccatgggcggcg 436 |||||||||||||||||||| Sbjct: 2284 cgcgggcgccatgggcggcg 2303
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cgcgggcgccatgggcggcg 436 |||||||||||||||||||| Sbjct: 3237670 cgcgggcgccatgggcggcg 3237651
>ref|XM_743168.1| Aspergillus fumigatus Af293 ABC multidrug transporter (Afu5g00790) partial mRNA Length = 4416 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 64 tgcggcgactacatggaggactac 87 |||||||| ||||||||||||||| Sbjct: 4165 tgcggcgagtacatggaggactac 4188
>emb|X65195.2|SVPTT Streptomyces viridochromogenes strain Tue494 phosphinothricin tripeptide biosynthetic gene cluster: ORFB1, ORFB2, ORF1, phsB gene, ORFM, phsC gene, pmi gene, adhP gene, ORF3, pgdP gene, ppm gene, ppd gene, ORFx, pgmP gene, cpps gene, cppm gene, aldP gene, pmet gene, pms gene, phsA gene, pat gene, dea gene, the1 gene, the2 gene, trs gene, prpA gene, ORFE1, ORFE2 and ORFE3 (partial) Length = 37823 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 335 cggtgtcgctggtgagggcg 354 |||||||||||||||||||| Sbjct: 20543 cggtgtcgctggtgagggcg 20524
>emb|AJ272153.1|ECA272153 Erwinia carotovora partial nrdA gene for aerobic ribonucleotide reductase, class Ia Length = 628 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 ggcgttcgcggtggagctgc 370 |||||||||||||||||||| Sbjct: 212 ggcgttcgcggtggagctgc 231
>gb|AE009445.1| Brucella melitensis 16M chromosome I, section 2 of 195 of the complete sequence Length = 7186 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 gccagcttcttctggccgcc 417 |||||||||||||||||||| Sbjct: 832 gccagcttcttctggccgcc 851
>ref|XM_232995.3| PREDICTED: Rattus norvegicus ring finger protein 20 (predicted) (Rnf20_predicted), mRNA Length = 4232 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 gccacagccagcttcttctg 411 |||||||||||||||||||| Sbjct: 2577 gccacagccagcttcttctg 2558
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gccagcttcttctggccgcc 417 |||||||||||||||||||| Sbjct: 1998387 gccagcttcttctggccgcc 1998368
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 399 ccagcttcttctggccgccgcggg 422 |||||||||||||| ||||||||| Sbjct: 3534505 ccagcttcttctgggcgccgcggg 3534528
>gb|AE005062.1| Halobacterium sp. NRC-1 section 93 of 170 of the complete genome Length = 10500 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 cgccgacgcggtgtcgctgg 346 |||||||||||||||||||| Sbjct: 1724 cgccgacgcggtgtcgctgg 1705
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gacttcctcggctacgacct 209 |||||||||||||||||||| Sbjct: 33911 gacttcctcggctacgacct 33892
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ggtgtcgctggtgagggcgt 355 |||||||||||||||||||| Sbjct: 1295327 ggtgtcgctggtgagggcgt 1295346
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 323 cggacgccgacgcggtgtcgctgg 346 ||||||||||||||||| |||||| Sbjct: 390025 cggacgccgacgcggtggcgctgg 390002
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 gccagcttcttctggccgcc 417 |||||||||||||||||||| Sbjct: 1995506 gccagcttcttctggccgcc 1995487
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 gctccgtggagccgctcagcacgg 325 ||||| |||||||||||||||||| Sbjct: 1310777 gctccatggagccgctcagcacgg 1310754 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,218,364 Number of Sequences: 3902068 Number of extensions: 2218364 Number of successful extensions: 47234 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46368 Number of HSP's gapped (non-prelim): 862 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
