| Clone Name | baet34a07 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 119 bits (60), Expect = 7e-24 Identities = 183/224 (81%) Strand = Plus / Minus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcgacgcccggggacag 203 |||||||||||||||| ||||| || ||| ||| |||||||||| ||||||||| || || Sbjct: 32219 gttcaccatcatcaaccagtgcaagacgatggtctggccggcggtgacgcccggcgagag 32160 Query: 204 cttcaacgggggcgggttcgagctcaagacgggggagtcatccgtcttcacggtgccgca 263 ||||| ||| || ||||||| ||| ||| ||||| | || || ||||||| |||| Sbjct: 32159 cttcagcggcggagggttcgcgctgaagccggggcaatcgatggtgttcacggcgccggt 32100 Query: 264 ggcgtggtcgggccgcatctggggccgcacggactgcgccttcgaccaggccggcaccgg 323 || ||||||||| ||||||||||| || ||||| |||| |||||||||||| |||| ||| Sbjct: 32099 ggggtggtcggggcgcatctggggtcggacggagtgcgacttcgaccaggcgggcaacgg 32040 Query: 324 caagtgcggcacgggctcctgcggcgcggccctcaagtgcggcg 367 | |||| |||||| |||||||| ||| ||||||||||||| Sbjct: 32039 ctcctgcgccacggggtcctgcgggtcggagctcaagtgcggcg 31996
>ref|XM_474462.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 837 Score = 111 bits (56), Expect = 2e-21 Identities = 182/224 (81%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcgacgcccggggacag 203 |||||||||||||||| ||||| || ||| ||| |||||||||| ||||||||| || || Sbjct: 81 gttcaccatcatcaaccagtgcaagacgatggtctggccggcggtgacgcccggcgagag 140 Query: 204 cttcaacgggggcgggttcgagctcaagacgggggagtcatccgtcttcacggtgccgca 263 |||| ||| || ||||||| ||| ||| ||||| | || || ||||||| |||| Sbjct: 141 cttcggcggcggagggttcgcgctgaagccggggcaatcgatggtgttcacggcgccggt 200 Query: 264 ggcgtggtcgggccgcatctggggccgcacggactgcgccttcgaccaggccggcaccgg 323 || ||||||||| ||||||||||| || ||||| |||| |||||||||||| |||| ||| Sbjct: 201 ggggtggtcggggcgcatctggggtcggacggagtgcgacttcgaccaggcgggcaacgg 260 Query: 324 caagtgcggcacgggctcctgcggcgcggccctcaagtgcggcg 367 | |||| |||||| |||||||| ||| ||||||||||||| Sbjct: 261 ctcctgcgccacggggtcctgcgggtcggagctcaagtgcggcg 304
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 111 bits (56), Expect = 2e-21 Identities = 182/224 (81%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcgacgcccggggacag 203 |||||||||||||||| ||||| || ||| ||| |||||||||| ||||||||| || || Sbjct: 35323072 gttcaccatcatcaaccagtgcaagacgatggtctggccggcggtgacgcccggcgagag 35323131 Query: 204 cttcaacgggggcgggttcgagctcaagacgggggagtcatccgtcttcacggtgccgca 263 |||| ||| || ||||||| ||| ||| ||||| | || || ||||||| |||| Sbjct: 35323132 cttcggcggcggagggttcgcgctgaagccggggcaatcgatggtgttcacggcgccggt 35323191 Query: 264 ggcgtggtcgggccgcatctggggccgcacggactgcgccttcgaccaggccggcaccgg 323 || ||||||||| ||||||||||| || ||||| |||| |||||||||||| |||| ||| Sbjct: 35323192 ggggtggtcggggcgcatctggggtcggacggagtgcgacttcgaccaggcgggcaacgg 35323251 Query: 324 caagtgcggcacgggctcctgcggcgcggccctcaagtgcggcg 367 | |||| |||||| |||||||| ||| ||||||||||||| Sbjct: 35323252 ctcctgcgccacggggtcctgcgggtcggagctcaagtgcggcg 35323295
>dbj|AK061001.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-F12, full insert sequence Length = 1291 Score = 111 bits (56), Expect = 2e-21 Identities = 182/224 (81%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcgacgcccggggacag 203 |||||||||||||||| ||||| || ||| ||| |||||||||| ||||||||| || || Sbjct: 168 gttcaccatcatcaaccagtgcaagacgatggtctggccggcggtgacgcccggcgagag 227 Query: 204 cttcaacgggggcgggttcgagctcaagacgggggagtcatccgtcttcacggtgccgca 263 |||| ||| || ||||||| ||| ||| ||||| | || || ||||||| |||| Sbjct: 228 cttcggcggcggagggttcgcgctgaagccggggcaatcgatggtgttcacggcgccggt 287 Query: 264 ggcgtggtcgggccgcatctggggccgcacggactgcgccttcgaccaggccggcaccgg 323 || ||||||||| ||||||||||| || ||||| |||| |||||||||||| |||| ||| Sbjct: 288 ggggtggtcggggcgcatctggggtcggacggagtgcgacttcgaccaggcgggcaacgg 347 Query: 324 caagtgcggcacgggctcctgcggcgcggccctcaagtgcggcg 367 | |||| |||||| |||||||| ||| ||||||||||||| Sbjct: 348 ctcctgcgccacggggtcctgcgggtcggagctcaagtgcggcg 391
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 111 bits (56), Expect = 2e-21 Identities = 182/224 (81%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcgacgcccggggacag 203 |||||||||||||||| ||||| || ||| ||| |||||||||| ||||||||| || || Sbjct: 118917 gttcaccatcatcaaccagtgcaagacgatggtctggccggcggtgacgcccggcgagag 118976 Query: 204 cttcaacgggggcgggttcgagctcaagacgggggagtcatccgtcttcacggtgccgca 263 |||| ||| || ||||||| ||| ||| ||||| | || || ||||||| |||| Sbjct: 118977 cttcggcggcggagggttcgcgctgaagccggggcaatcgatggtgttcacggcgccggt 119036 Query: 264 ggcgtggtcgggccgcatctggggccgcacggactgcgccttcgaccaggccggcaccgg 323 || ||||||||| ||||||||||| || ||||| |||| |||||||||||| |||| ||| Sbjct: 119037 ggggtggtcggggcgcatctggggtcggacggagtgcgacttcgaccaggcgggcaacgg 119096 Query: 324 caagtgcggcacgggctcctgcggcgcggccctcaagtgcggcg 367 | |||| |||||| |||||||| ||| ||||||||||||| Sbjct: 119097 ctcctgcgccacggggtcctgcgggtcggagctcaagtgcggcg 119140
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 162 gtgcgaggcgacggtgtggccggcggcga 190 ||||||| ||||||||||||||||||||| Sbjct: 4019883 gtgcgagccgacggtgtggccggcggcga 4019855
>gb|AF001528.1|AF001528 Musa acuminata ripening-associated protein mRNA, partial cds Length = 580 Score = 48.1 bits (24), Expect = 0.021 Identities = 33/36 (91%) Strand = Plus / Plus Query: 274 ggccgcatctggggccgcacggactgcgccttcgac 309 |||||||||||||||||||| | |||| |||||||| Sbjct: 202 ggccgcatctggggccgcaccggctgctccttcgac 237
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09, complete sequence Length = 159600 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 115249 acggtgtggccggcggcgacgcc 115227 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 106029 acggtgtggccggcggcgacgcc 106007 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 91704 acggtgtggccggcggcgacgcc 91682 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 81117 acggtgtggccggcggcgacgcc 81095 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 72206 acggtgtggccggcggcgacgcc 72184
>emb|X68197.1|OSTHLP O.sativa mRNA for thaumatin-like protein Length = 681 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 140 acggtgtggccggcggcgacgcc 162
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26992055 acggtgtggccggcggcgacgcc 26992033 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26982585 acggtgtggccggcggcgacgcc 26982563 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26968260 acggtgtggccggcggcgacgcc 26968238 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26957673 acggtgtggccggcggcgacgcc 26957651 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26947239 acggtgtggccggcggcgacgcc 26947217
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.081 Identities = 26/27 (96%) Strand = Plus / Plus Query: 268 tggtcgggccgcatctggggccgcacg 294 ||||| ||||||||||||||||||||| Sbjct: 29904582 tggtccggccgcatctggggccgcacg 29904608
>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0481E08 Length = 171965 Score = 46.1 bits (23), Expect = 0.081 Identities = 26/27 (96%) Strand = Plus / Plus Query: 268 tggtcgggccgcatctggggccgcacg 294 ||||| ||||||||||||||||||||| Sbjct: 100095 tggtccggccgcatctggggccgcacg 100121
>dbj|AK099946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123C17, full insert sequence Length = 796 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 194 acggtgtggccggcggcgacgcc 216
>dbj|AK069182.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009L15, full insert sequence Length = 693 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Plus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 170 acggtgtggccggcggcgacgcc 192
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26918452 acggtgtggccggcggcgacgcc 26918430 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26909232 acggtgtggccggcggcgacgcc 26909210 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26894907 acggtgtggccggcggcgacgcc 26894885 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26884320 acggtgtggccggcggcgacgcc 26884298 Score = 46.1 bits (23), Expect = 0.081 Identities = 23/23 (100%) Strand = Plus / Minus Query: 172 acggtgtggccggcggcgacgcc 194 ||||||||||||||||||||||| Sbjct: 26875409 acggtgtggccggcggcgacgcc 26875387
>ref|XM_469148.1| Oryza sativa (japonica cultivar-group), mRNA Length = 817 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcg 189 |||||||||| |||||||||||| | || ||||||||||||||| Sbjct: 122 gttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcg 167
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Minus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcg 189 |||||||||| |||||||||||| | || ||||||||||||||| Sbjct: 25747298 gttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcg 25747253
>gb|AC137991.3| Oryza sativa chromosome 3 BAC OSJNBa0034D21 genomic sequence, complete sequence Length = 190834 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcg 189 |||||||||| |||||||||||| | || ||||||||||||||| Sbjct: 97598 gttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcg 97643
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Minus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcg 189 |||||||||| |||||||||||| | || ||||||||||||||| Sbjct: 25838607 gttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcg 25838562
>dbj|AK102970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J22, full insert sequence Length = 846 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcg 189 |||||||||| |||||||||||| | || ||||||||||||||| Sbjct: 126 gttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcg 171
>dbj|AK102798.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108D14, full insert sequence Length = 821 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcg 189 |||||||||| |||||||||||| | || ||||||||||||||| Sbjct: 124 gttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcg 169
>gb|L76377.1|RIC14B Oryza sativa (clone 14b) osmotin protein (14b) gene, 3' complete cds Length = 803 Score = 44.1 bits (22), Expect = 0.32 Identities = 40/46 (86%) Strand = Plus / Plus Query: 144 gttcaccatcatcaacaagtgcgaggcgacggtgtggccggcggcg 189 |||||||||| |||||||||||| | || ||||||||||||||| Sbjct: 66 gttcaccatcgtcaacaagtgcgggtacaccgtgtggccggcggcg 111
>gb|DQ277013.1| Ficus awkeotsang thaumatin-like protein isoform 3 mRNA, complete cds Length = 842 Score = 44.1 bits (22), Expect = 0.32 Identities = 25/26 (96%) Strand = Plus / Plus Query: 268 tggtcgggccgcatctggggccgcac 293 ||||| |||||||||||||||||||| Sbjct: 241 tggtccggccgcatctggggccgcac 266
>gb|AF355455.2| Hordeum vulgare thaumatin-like protein TLP4 mRNA, complete cds Length = 800 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 280 atctggggccgcacggactgc 300 ||||||||||||||||||||| Sbjct: 262 atctggggccgcacggactgc 282
>ref|NM_194841.1| Oryza sativa (japonica cultivar-group) putative thaumatin-like protein (OSJNBa0030B02.15), mRNA Length = 978 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 267 gtggtcgggccgcatctggggccgcacggactgcgcc 303 ||||||||||||||| ||||| |||||| ||||||| Sbjct: 240 gtggtcgggccgcatgtgggggcgcacgctctgcgcc 276
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 cggcaccggcaagtgcggcacgggc 339 ||||| ||||||||||||||||||| Sbjct: 1902410 cggcagcggcaagtgcggcacgggc 1902434
>ref|XM_478722.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 168 ggcgacggtgtggccggcggcgacg 192 |||||||| |||||||||||||||| Sbjct: 913 ggcgacggcgtggccggcggcgacg 937
>ref|XM_366968.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03044.4) partial mRNA Length = 1101 Score = 42.1 bits (21), Expect = 1.3 Identities = 30/33 (90%) Strand = Plus / Plus Query: 274 ggccgcatctggggccgcacggactgcgccttc 306 |||||||||||||||||||| ||||| ||||| Sbjct: 166 ggccgcatctggggccgcacaaactgcaccttc 198
>gb|AC132256.3| Mus musculus BAC clone RP24-358I7 from chromosome 8, complete sequence Length = 163897 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 23 ctcctcttctccttctgcttg 43 ||||||||||||||||||||| Sbjct: 142005 ctcctcttctccttctgcttg 141985
>gb|AC127369.4| Mus musculus BAC clone RP23-26A15 from 8, complete sequence Length = 211411 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 ctcctcttctccttctgcttg 43 ||||||||||||||||||||| Sbjct: 202838 ctcctcttctccttctgcttg 202858
>emb|BX572598.1| Rhodopseudomonas palustris CGA009 complete genome; segment 6/16 Length = 346879 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 170 cgacggtgtggccggcggcga 190 ||||||||||||||||||||| Sbjct: 345639 cgacggtgtggccggcggcga 345659
>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence Length = 146836 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 267 gtggtcgggccgcatctggggccgcacggactgcgcc 303 ||||||||||||||| ||||| |||||| ||||||| Sbjct: 135286 gtggtcgggccgcatgtgggggcgcacgctctgcgcc 135322
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 267 gtggtcgggccgcatctggggccgcacggactgcgcc 303 ||||||||||||||| ||||| |||||| ||||||| Sbjct: 2808510 gtggtcgggccgcatgtgggggcgcacgctctgcgcc 2808546
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 ggcgacggtgtggccggcggcgacg 192 |||||||| |||||||||||||||| Sbjct: 22404038 ggcgacggcgtggccggcggcgacg 22404014
>gb|AC127460.2| Homo sapiens chromosome 5 clone RP11-689B23, complete sequence Length = 115293 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 aagttcaccatcatcaacaag 162 ||||||||||||||||||||| Sbjct: 49049 aagttcaccatcatcaacaag 49069
>gb|AC113390.3| Homo sapiens chromosome 5 clone RP11-360C3, complete sequence Length = 196545 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 142 aagttcaccatcatcaacaag 162 ||||||||||||||||||||| Sbjct: 190932 aagttcaccatcatcaacaag 190912
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 168 ggcgacggtgtggccggcggcgacg 192 |||||||| |||||||||||||||| Sbjct: 65105 ggcgacggcgtggccggcggcgacg 65081
>gb|AF466646.1| Zea mays putative transposase (Z195D10.1) gene, partial cds; glycyl-tRNA synthetase (Z195D10.2), ornithine carbamoyltransferase (Z195D10.3), putative gag protein (Z195D10.5), putative SET-domain transcriptional regulator (Z195D10.7), putative oxysterol-binding protein (Z195D10.8), putative polyprotein (Z195D10.9), putative oxysterol-binding protein (Z195D10.10), putative gag-pol polyprotein (Z195D10.11), putative phosphatidylinositol-4-phosphate-5-kinase (Z195D10.12), hypothetical protein (Z195D10.15), putative gag-pol polyprotein (Z195D10.16), putative polyprotein (Z195D10.17), putative retrotransposon protein (Z195D10.18), and prpol (Z195D10.19) genes, complete cds; and putative teosinte branched2 (Z195D10.20) gene, partial cds Length = 141939 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 258 gccgcaggcgtggtcgggccgcatctggg 286 |||||||| ||||||||||||| |||||| Sbjct: 4273 gccgcaggggtggtcgggccgcttctggg 4301
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Plus Query: 267 gtggtcgggccgcatctggggccgcacggactgcgcc 303 ||||||||||||||| ||||| |||||| ||||||| Sbjct: 2808461 gtggtcgggccgcatgtgggggcgcacgctctgcgcc 2808497
>dbj|AP006671.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT39I14, TM0368c, complete sequence Length = 71495 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 27 tcttctccttctgcttggaga 47 ||||||||||||||||||||| Sbjct: 41792 tcttctccttctgcttggaga 41812
>gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, complete sequence Length = 171669 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ctcctcttctccttctgctt 42 |||||||||||||||||||| Sbjct: 138730 ctcctcttctccttctgctt 138749
>gb|AY551432.1| Hordeum vulgare subsp. vulgare GA 2-oxidase 4 (GA2ox4) mRNA, complete cds Length = 1574 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 79 gctctgcctctcctttgctt 98
>gb|AC161210.5| Mus musculus chromosome 3, clone RP23-71N6, complete sequence Length = 158006 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 ctcctcttctccttctgctt 42 |||||||||||||||||||| Sbjct: 94118 ctcctcttctccttctgctt 94099
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 gtcggccaggaagttcacca 151 |||||||||||||||||||| Sbjct: 308992 gtcggccaggaagttcacca 309011
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 cgaccaggccggcaccggcaagtg 329 |||||||||||||| ||||||||| Sbjct: 269599 cgaccaggccggcatcggcaagtg 269576
>gb|AY512591.1| Schistocerca gregaria thaumatin-like protein 1 (Tau1) mRNA, complete cds Length = 894 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 274 ggccgcatctggggccgcac 293 |||||||||||||||||||| Sbjct: 253 ggccgcatctggggccgcac 272
>gb|BC024225.2| Homo sapiens surfeit 5, transcript variant c, mRNA (cDNA clone MGC:2563 IMAGE:3009749), complete cds Length = 3879 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 2267 gctctgcctctcctttgctt 2286
>gb|BC040111.1| Homo sapiens surfeit 5, transcript variant c, mRNA (cDNA clone MGC:48682 IMAGE:6056006), complete cds Length = 3871 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 2274 gctctgcctctcctttgctt 2293
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 cgaccaggccggcaccggcaagtg 329 |||||||||||||| ||||||||| Sbjct: 951864 cgaccaggccggcatcggcaagtg 951841
>gb|DQ249342.1| Streptomyces hygroscopicus subsp. duamyceticus strain JCM4427 unknown polyketide biosynthetic gene cluster, partial sequence; and AHBA biosynthesis gene cluster, complete sequence Length = 55488 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 tcgaccaggccggcaccggc 324 |||||||||||||||||||| Sbjct: 10457 tcgaccaggccggcaccggc 10476
>ref|NG_000837.1| Homo sapiens surfeit locus (SURF@) on chromosome 9 Length = 45425 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 11801 gctctgcctctcctttgctt 11782
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 gcgaggcgacggtgtggccggcgg 187 |||||||||||||||||| ||||| Sbjct: 4415919 gcgaggcgacggtgtggctggcgg 4415896
>ref|NM_181491.1| Homo sapiens surfeit 5 (SURF5), transcript variant c, mRNA Length = 3887 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 2290 gctctgcctctcctttgctt 2309
>emb|AL158826.23| Human DNA sequence from clone RP11-244N20 on chromosome 9 Contains the 5' end of the ABO gene for ABO blood group (transferase A alpha 1-3-N-acetylgalactosaminyltransferase; transferase B alpha 1-3-galactosyltransferase) pseudogene ABO-*O02 allele, the gene for a novel protein similar to lipocalin 1 (protein migrating faster than albumin tear prealbumin) (LCN1), a ribosomal protein L21 (RPL21) pseudogene, the RPL7A gene for ribosomal protein L7a, a novel gene (MGC43306), the XPMC2H gene for Xenopus prevents mitotic catastrophe 2 homolog, the 5' end of the ADAMTS13 gene for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif 13, the SURF1 gene for surfeit 1, the SURF2 gene for surfeit 2, the SURF4 gene for surfeit 4, the SURF5 gene for surfeit 5, the SURF6 gene for surfeit 6 and eight CpG islands, complete sequence Length = 184513 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 75993 gctctgcctctcctttgctt 75974
>emb|AL160289.14| Human DNA sequence from clone RP11-161K20 on chromosome 10 Contains the 5' end of the gene for the likely ortholog of mouse sialyltransferase 8-VI (alpha-2 8-sialytransferase) (ST8SIA-VI), the 3' end of a novel gene and a CpG island, complete sequence Length = 62918 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 80 tgctcgctctgcctctcctttgct 103 ||||| |||||||||||||||||| Sbjct: 3352 tgctccctctgcctctcctttgct 3375
>gb|AC110418.7| Homo sapiens 3 BAC RP11-711F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148914 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 agtcatccgtcttcacggtgccgc 262 |||||| ||||||||||||||||| Sbjct: 23971 agtcatacgtcttcacggtgccgc 23948
>emb|BX572602.1| Rhodopseudomonas palustris CGA009 complete genome; segment 10/16 Length = 349981 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 162 gtgcgaggcgacggtgtggccggcggcg 189 ||||||| | |||||||||||||||||| Sbjct: 299209 gtgcgagcctacggtgtggccggcggcg 299182
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 306 cgaccaggccggcaccggcaagtg 329 |||||||||||||| ||||||||| Sbjct: 794269 cgaccaggccggcatcggcaagtg 794246
>emb|AL591985.1|RME591985 Sinorhizobium meliloti 1021 complete pSymB Length = 1683333 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 314 ccggcaccggcaagtgcggc 333 |||||||||||||||||||| Sbjct: 170064 ccggcaccggcaagtgcggc 170045
>emb|AJ224639.1|HSA224639 Homo sapiens Surf-5 and Surf-6 genes Length = 14053 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 5726 gctctgcctctcctttgctt 5745
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 gtggccggcggcgacgcccg 196 |||||||||||||||||||| Sbjct: 1784192 gtggccggcggcgacgcccg 1784211
>gb|AC105900.2| Homo sapiens chromosome 3 clone RP11-30P17, complete sequence Length = 148377 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 239 agtcatccgtcttcacggtgccgc 262 |||||| ||||||||||||||||| Sbjct: 76459 agtcatacgtcttcacggtgccgc 76482
>dbj|AK159256.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420013E01 product:TBC1 domain family, member 1, full insert sequence Length = 2638 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 cggtgtggccggcggcgacg 192 |||||||||||||||||||| Sbjct: 23 cggtgtggccggcggcgacg 4
>gb|AC008494.8| Homo sapiens chromosome 5 clone CTC-428G20, complete sequence Length = 181800 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcctcttctccttctgcttg 43 |||||||||||||||||||| Sbjct: 60402 tcctcttctccttctgcttg 60383
>gb|AC094095.2| Homo sapiens chromosome 5 clone RP11-115D4, complete sequence Length = 162282 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 tcctcttctccttctgcttg 43 |||||||||||||||||||| Sbjct: 113700 tcctcttctccttctgcttg 113681
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 ggcgtggtcgggccgcatctgggg 287 |||||||||||||||| ||||||| Sbjct: 20787745 ggcgtggtcgggccgcgtctgggg 20787768
>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic gene cluster, partial sequence Length = 127559 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 gtcggccaggaagttcacca 151 |||||||||||||||||||| Sbjct: 85148 gtcggccaggaagttcacca 85129
>gb|AC068976.5| Homo sapiens BAC clone RP11-777A21 from 2, complete sequence Length = 57074 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 28 cttctccttctgcttggaga 47 |||||||||||||||||||| Sbjct: 11927 cttctccttctgcttggaga 11908
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 tggccggcggcgacgcccgg 197 |||||||||||||||||||| Sbjct: 8523777 tggccggcggcgacgcccgg 8523758
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 ggcgtggtcgggccgcatctgggg 287 |||||||||||||||| ||||||| Sbjct: 62774 ggcgtggtcgggccgcgtctgggg 62797
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ccggcaccggcaagtgcggcacgg 337 ||||||||||||| |||||||||| Sbjct: 3211741 ccggcaccggcaattgcggcacgg 3211718
>emb|BX901948.4| Zebrafish DNA sequence from clone DKEY-187E3 in linkage group 9, complete sequence Length = 65953 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 aactcctcttctccttctgc 40 |||||||||||||||||||| Sbjct: 47231 aactcctcttctccttctgc 47250
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 137 ccaggaagttcaccatcatcaaca 160 ||||||||||||||| |||||||| Sbjct: 2319072 ccaggaagttcaccagcatcaaca 2319049
>gb|AY603653.1| Frankia sp. ACN14a NifK (nifK) gene, partial cds Length = 557 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cgaggcgacggtgtggccgg 184 |||||||||||||||||||| Sbjct: 237 cgaggcgacggtgtggccgg 256
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 cgacggtgtggccggcggcg 189 |||||||||||||||||||| Sbjct: 1738388 cgacggtgtggccggcggcg 1738407
>gb|AC002107.1|AC002107 Genomic sequence from Human 9q34, complete sequence Length = 39265 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 gctctgcctctcctttgctt 104 |||||||||||||||||||| Sbjct: 23200 gctctgcctctcctttgctt 23181 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,603,316 Number of Sequences: 3902068 Number of extensions: 2603316 Number of successful extensions: 58530 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 57027 Number of HSP's gapped (non-prelim): 1505 length of query: 377 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 355 effective length of database: 17,147,199,772 effective search space: 6087255919060 effective search space used: 6087255919060 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)