| Clone Name | baet33d01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095H24, full insert sequence Length = 2265 Score = 517 bits (261), Expect = e-143 Identities = 426/481 (88%) Strand = Plus / Plus Query: 13 caagtgttcttgctcctccgaaagatgtcgaggacctgcaaacagaaggatatggaaatg 72 ||||||| ||||| ||||| |||||||| ||||||||||||| |||||||| ||||||| Sbjct: 492 caagtgtccttgcccctccaaaagatgtggaggacctgcaaatcgaaggatacggaaatg 551 Query: 73 ttaatatcttcacatacaacgaactgcgagcagccacaaagaactttcggcctgatcaaa 132 ||||||| |||||||| || ||||| ||||||||||||| ||||| |||||||| |||| Sbjct: 552 ttaatattttcacatataatgaactaagagcagccacaaaaaacttccggcctgaccaaa 611 Query: 133 ttcttggagagggtgggtttggagttgtttacaaaggtgtcattgatgaaaatgttagaa 192 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 612 ttcttggagagggtgggtttggtgttgtttacaaaggtgtaattgatgaaaatgttagag 671 Query: 193 taggttttaaatccacacaggttgctgtgaaagaactaaacccagagggctttcagggag 252 || ||| ||||||||| ||||||||||||||| ||||||||||||| |||||||| | Sbjct: 672 cgggctttccatccacacaagttgctgtgaaagaattaaacccagagggatttcagggtg 731 Query: 253 acaaggaatggttggcagaagtcaattatcttgggcaacttagtcatccaaatctagttg 312 ||||||||||||||||||||||||| || |||||||||||||| |||||||||||||| | Sbjct: 732 acaaggaatggttggcagaagtcaactaccttgggcaacttagccatccaaatctagtcg 791 Query: 313 aactgattggctattgctgcgagggttcacataggttacttgtctatgagtacatggctt 372 |||||||||| |||||||| || || || ||||| | ||||| || ||||||||||||| Sbjct: 792 aactgattgggtattgctgtgaaggctctcatagactgcttgtttacgagtacatggctt 851 Query: 373 gtggcagtcttgagaagcacctttttcgacgggtttgccttaatatgccatggtcaactc 432 | ||||| ||||| ||||| |||||||| |||||||||||||||||||||||||| |||| Sbjct: 852 gcggcagccttgaaaagcatctttttcgccgggtttgccttaatatgccatggtctactc 911 Query: 433 gcatgaagattgcgctcggtgcagcaggggggcttgagtatctccacggagctgagagat 492 | ||||||||||| || ||||| ||| ||||||| || ||||| |||||||||||||||| Sbjct: 912 gaatgaagattgctctaggtgctgcaagggggctggaatatcttcacggagctgagagat 971 Query: 493 c 493 | Sbjct: 972 c 972
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 291 bits (147), Expect = 1e-75 Identities = 228/255 (89%) Strand = Plus / Minus Query: 13 caagtgttcttgctcctccgaaagatgtcgaggacctgcaaacagaaggatatggaaatg 72 ||||||| ||||| ||||| |||||||| ||||||||||||| |||||||| ||||||| Sbjct: 26983868 caagtgtccttgcccctccaaaagatgtggaggacctgcaaatcgaaggatacggaaatg 26983809 Query: 73 ttaatatcttcacatacaacgaactgcgagcagccacaaagaactttcggcctgatcaaa 132 ||||||| |||||||| || ||||| ||||||||||||| ||||| |||||||| |||| Sbjct: 26983808 ttaatattttcacatataatgaactaagagcagccacaaaaaacttccggcctgaccaaa 26983749 Query: 133 ttcttggagagggtgggtttggagttgtttacaaaggtgtcattgatgaaaatgttagaa 192 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 26983748 ttcttggagagggtgggtttggtgttgtttacaaaggtgtaattgatgaaaatgttagag 26983689 Query: 193 taggttttaaatccacacaggttgctgtgaaagaactaaacccagagggctttcagggag 252 || ||| ||||||||| ||||||||||||||| ||||||||||||| |||||||| | Sbjct: 26983688 cgggctttccatccacacaagttgctgtgaaagaattaaacccagagggatttcagggtg 26983629 Query: 253 acaaggaatggttgg 267 ||||||||||||||| Sbjct: 26983628 acaaggaatggttgg 26983614 Score = 125 bits (63), Expect = 1e-25 Identities = 117/135 (86%) Strand = Plus / Minus Query: 266 ggcagaagtcaattatcttgggcaacttagtcatccaaatctagttgaactgattggcta 325 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 26983356 ggcagaagtcaactaccttgggcaacttagccatccaaatctagtcgaactgattgggta 26983297 Query: 326 ttgctgcgagggttcacataggttacttgtctatgagtacatggcttgtggcagtcttga 385 |||||| || || || ||||| | ||||| || |||||||||||||| ||||| ||||| Sbjct: 26983296 ttgctgtgaaggctctcatagactgcttgtttacgagtacatggcttgcggcagccttga 26983237 Query: 386 gaagcacctttttcg 400 ||||| |||||||| Sbjct: 26983236 aaagcatctttttcg 26983222 Score = 109 bits (55), Expect = 9e-21 Identities = 82/91 (90%) Strand = Plus / Minus Query: 403 gggtttgccttaatatgccatggtcaactcgcatgaagattgcgctcggtgcagcagggg 462 ||||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| ||| Sbjct: 26982426 gggtttgccttaatatgccatggtctactcgaatgaagattgctctaggtgctgcaaggg 26982367 Query: 463 ggcttgagtatctccacggagctgagagatc 493 |||| || ||||| ||||||||||||||||| Sbjct: 26982366 ggctggaatatcttcacggagctgagagatc 26982336
>dbj|AP004744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0065C04 Length = 165270 Score = 291 bits (147), Expect = 1e-75 Identities = 228/255 (89%) Strand = Plus / Minus Query: 13 caagtgttcttgctcctccgaaagatgtcgaggacctgcaaacagaaggatatggaaatg 72 ||||||| ||||| ||||| |||||||| ||||||||||||| |||||||| ||||||| Sbjct: 107629 caagtgtccttgcccctccaaaagatgtggaggacctgcaaatcgaaggatacggaaatg 107570 Query: 73 ttaatatcttcacatacaacgaactgcgagcagccacaaagaactttcggcctgatcaaa 132 ||||||| |||||||| || ||||| ||||||||||||| ||||| |||||||| |||| Sbjct: 107569 ttaatattttcacatataatgaactaagagcagccacaaaaaacttccggcctgaccaaa 107510 Query: 133 ttcttggagagggtgggtttggagttgtttacaaaggtgtcattgatgaaaatgttagaa 192 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct: 107509 ttcttggagagggtgggtttggtgttgtttacaaaggtgtaattgatgaaaatgttagag 107450 Query: 193 taggttttaaatccacacaggttgctgtgaaagaactaaacccagagggctttcagggag 252 || ||| ||||||||| ||||||||||||||| ||||||||||||| |||||||| | Sbjct: 107449 cgggctttccatccacacaagttgctgtgaaagaattaaacccagagggatttcagggtg 107390 Query: 253 acaaggaatggttgg 267 ||||||||||||||| Sbjct: 107389 acaaggaatggttgg 107375 Score = 125 bits (63), Expect = 1e-25 Identities = 117/135 (86%) Strand = Plus / Minus Query: 266 ggcagaagtcaattatcttgggcaacttagtcatccaaatctagttgaactgattggcta 325 |||||||||||| || |||||||||||||| |||||||||||||| ||||||||||| || Sbjct: 107117 ggcagaagtcaactaccttgggcaacttagccatccaaatctagtcgaactgattgggta 107058 Query: 326 ttgctgcgagggttcacataggttacttgtctatgagtacatggcttgtggcagtcttga 385 |||||| || || || ||||| | ||||| || |||||||||||||| ||||| ||||| Sbjct: 107057 ttgctgtgaaggctctcatagactgcttgtttacgagtacatggcttgcggcagccttga 106998 Query: 386 gaagcacctttttcg 400 ||||| |||||||| Sbjct: 106997 aaagcatctttttcg 106983 Score = 109 bits (55), Expect = 9e-21 Identities = 82/91 (90%) Strand = Plus / Minus Query: 403 gggtttgccttaatatgccatggtcaactcgcatgaagattgcgctcggtgcagcagggg 462 ||||||||||||||||||||||||| ||||| ||||||||||| || ||||| ||| ||| Sbjct: 106187 gggtttgccttaatatgccatggtctactcgaatgaagattgctctaggtgctgcaaggg 106128 Query: 463 ggcttgagtatctccacggagctgagagatc 493 |||| || ||||| ||||||||||||||||| Sbjct: 106127 ggctggaatatcttcacggagctgagagatc 106097
>gb|BT012781.1| Lycopersicon esculentum clone 113765R, mRNA sequence Length = 1619 Score = 77.8 bits (39), Expect = 3e-11 Identities = 81/95 (85%) Strand = Plus / Plus Query: 234 ccagagggctttcagggagacaaggaatggttggcagaagtcaattatcttgggcaactt 293 |||||||| |||||||| ||||||| ||| || | ||||| ||||| ||||| |||||| Sbjct: 542 ccagagggttttcagggtcacaaggagtgggtgactgaagttaattaccttggccaactt 601 Query: 294 agtcatccaaatctagttgaactgattggctattg 328 ||||||||||||| ||| |||| ||||||||||| Sbjct: 602 cgtcatccaaatctggttaaactcattggctattg 636
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence Length = 124895 Score = 63.9 bits (32), Expect = 5e-07 Identities = 53/60 (88%) Strand = Plus / Minus Query: 270 gaagtcaattatcttgggcaacttagtcatccaaatctagttgaactgattggctattgc 329 ||||| ||||| || ||||||||| ||||||||||||| ||| |||| |||||||||||| Sbjct: 6009 gaagttaattacctcgggcaacttcgtcatccaaatctggttaaactcattggctattgc 5950
>gb|AC145120.1| Solanum demissum chromosome 5 BAC PGEC446O19 genomic sequence, complete sequence Length = 122450 Score = 56.0 bits (28), Expect = 1e-04 Identities = 52/60 (86%) Strand = Plus / Plus Query: 270 gaagtcaattatcttgggcaacttagtcatccaaatctagttgaactgattggctattgc 329 ||||| ||||| || || |||||| ||||||||||||| ||| |||| |||||||||||| Sbjct: 81563 gaagttaattacctcggccaacttcgtcatccaaatctggttaaactcattggctattgc 81622
>gb|BT014405.1| Lycopersicon esculentum clone 133710F, mRNA sequence Length = 1591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 79/96 (82%) Strand = Plus / Plus Query: 234 ccagagggctttcagggagacaaggaatggttggcagaagtcaattatcttgggcaactt 293 |||||||| ||||| || ||||||| ||| || | ||||| ||||| || || |||||| Sbjct: 566 ccagagggttttcaaggtcacaaggagtggctgactgaagttaattacctcggccaactt 625 Query: 294 agtcatccaaatctagttgaactgattggctattgc 329 ||||||||||| | ||| |||| |||||||||||| Sbjct: 626 cgtcatccaaatttggttaaactcattggctattgc 661
>ref|NM_129522.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT2G39660 mRNA, complete cds Length = 1427 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 594 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 639
>gb|AY093997.1| Arabidopsis thaliana At2g39660/F12L6.32 mRNA, complete cds Length = 1188 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 376 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 421
>gb|AY093278.1| Arabidopsis thaliana putative protein kinase (At2g39660) mRNA, complete cds Length = 1244 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 376 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 421
>gb|AC004218.3| Arabidopsis thaliana chromosome 2 clone F12L6 map CIC10A06, complete sequence Length = 102312 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 101221 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 101266
>gb|AC003674.3| Arabidopsis thaliana chromosome 2 clone F17A14 map CIC10A06, complete sequence Length = 39141 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 8000 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 8045
>gb|AY065029.1| Arabidopsis thaliana At2g39660/F12L6.32 mRNA, complete cds Length = 1714 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 594 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 639
>gb|AY062493.1| Arabidopsis thaliana putative protein kinase (At2g39660; F17A14.3) mRNA, complete cds Length = 1660 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 594 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 639
>gb|AF325086.1|AF325086 Arabidopsis thaliana putative protein kinase (At2g39660) mRNA, complete cds Length = 1188 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 376 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 421
>emb|BX819123.1|CNS0A8Z0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB49ZD03 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1660 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 550 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 595
>emb|BX819866.1|CNS0A8JI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS3ZH02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1670 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 526 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 571
>emb|BX819176.1|CNS0A7XV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB54ZA01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1693 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgct 330 |||||||| ||||| |||||||||||| ||||||| || ||||||| Sbjct: 631 gggcaactgagtcacccaaatctagttaaactgatcggttattgct 676
>gb|AC146709.11| Medicago truncatula clone mth2-90m14, complete sequence Length = 110472 Score = 48.1 bits (24), Expect = 0.028 Identities = 33/36 (91%) Strand = Plus / Plus Query: 135 cttggagagggtgggtttggagttgtttacaaaggt 170 |||||||| ||||| ||||||| ||||||||||||| Sbjct: 62575 cttggagaaggtggatttggaggtgtttacaaaggt 62610
>ref|NM_101304.2| Arabidopsis thaliana APK2A (PROTEIN KINASE 2A); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G14370 (APK2A) mRNA, complete cds Length = 1822 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 261 tggttggcagaagtcaattatcttgggcaacttagtcatccaaatct 307 |||||| | ||||| || |||||||| ||||||||||| |||||||| Sbjct: 601 tggttgactgaagtaaactatcttggtcaacttagtcacccaaatct 647
>gb|AC149544.1| Populus trichocarpa clone Pop1-69J1, complete sequence Length = 94430 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 285 gggcaacttagtcatccaaatctagttgaactgattggctattgctg 331 ||||||||||| ||||||||| | ||| || ||||||| |||||||| Sbjct: 7009 gggcaacttaggcatccaaatttggttaaattgattggttattgctg 7055
>gb|AY059894.1| Arabidopsis thaliana Strong similarity to APK2a protein (At1g14370; F14L17.14) mRNA, complete cds Length = 1598 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 261 tggttggcagaagtcaattatcttgggcaacttagtcatccaaatct 307 |||||| | ||||| || |||||||| ||||||||||| |||||||| Sbjct: 601 tggttgactgaagtaaactatcttggtcaacttagtcacccaaatct 647
>gb|AF334731.1| Arabidopsis thaliana clone C00152 (e) putative protein kinase (At1g14370) mRNA, complete cds Length = 1281 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 261 tggttggcagaagtcaattatcttgggcaacttagtcatccaaatct 307 |||||| | ||||| || |||||||| ||||||||||| |||||||| Sbjct: 409 tggttgactgaagtaaactatcttggtcaacttagtcacccaaatct 455
>dbj|D88206.1| Arabidopsis thaliana APK2a mRNA for protein kinase, complete cds Length = 1587 Score = 46.1 bits (23), Expect = 0.11 Identities = 41/47 (87%) Strand = Plus / Plus Query: 261 tggttggcagaagtcaattatcttgggcaacttagtcatccaaatct 307 |||||| | ||||| || |||||||| ||||||||||| |||||||| Sbjct: 585 tggttgactgaagtaaactatcttggtcaacttagtcacccaaatct 631
>ref|XM_474459.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2022 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 345 aggttacttgtctatgagtacatggc 370 ||||| |||||||||||||||||||| Sbjct: 1195 aggtttcttgtctatgagtacatggc 1220
>gb|AC146548.11| Medicago truncatula clone mth2-2p3, complete sequence Length = 129327 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 274 tcaattatcttgggcaacttagtcatccaaatct 307 ||||||||||||| |||||| |||||||||||| Sbjct: 67458 tcaattatcttggccaacttcatcatccaaatct 67491
>emb|AJ245900.1|OSA245900 Oryza sativa chromosome 4 BAC q3037-207F1 complete genome Length = 124321 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 345 aggttacttgtctatgagtacatggc 370 ||||| |||||||||||||||||||| Sbjct: 53404 aggtttcttgtctatgagtacatggc 53379
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 345 aggttacttgtctatgagtacatggc 370 ||||| |||||||||||||||||||| Sbjct: 35308376 aggtttcttgtctatgagtacatggc 35308401
>gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 111686 Score = 44.1 bits (22), Expect = 0.44 Identities = 34/38 (89%) Strand = Plus / Plus Query: 270 gaagtcaattatcttgggcaacttagtcatccaaatct 307 ||||| || |||||||| ||||||||||| |||||||| Sbjct: 47718 gaagtaaactatcttggtcaacttagtcacccaaatct 47755
>dbj|AK102046.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033081N02, full insert sequence Length = 2629 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 345 aggttacttgtctatgagtacatggc 370 ||||| |||||||||||||||||||| Sbjct: 1253 aggtttcttgtctatgagtacatggc 1278
>emb|AL606637.3|OSJN00076 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039K24, complete sequence Length = 173770 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 345 aggttacttgtctatgagtacatggc 370 ||||| |||||||||||||||||||| Sbjct: 104221 aggtttcttgtctatgagtacatggc 104246
>ref|NM_120100.2| Arabidopsis thaliana BRI1 (BRASSINOSTEROID INSENSITIVE 1); kinase AT4G39400 (BRI1) mRNA, complete cds Length = 4166 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ggtgggtttggagttgtttacaaag 168 ||||||||||||| ||||||||||| Sbjct: 2839 ggtgggtttggagatgtttacaaag 2863
>gb|AY581834.1| Cynodon dactylon putative serine/threonine-specific protein kinase mRNA, partial cds Length = 636 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 257 ggaatggttggcagaagtcaattatcttgggca 289 ||||||| |||| ||||||||||| |||||||| Sbjct: 444 ggaatggctggctgaagtcaattaccttgggca 476
>emb|AL161595.2|ATCHRIV91 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 91 Length = 198151 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ggtgggtttggagttgtttacaaag 168 ||||||||||||| ||||||||||| Sbjct: 47669 ggtgggtttggagatgtttacaaag 47693
>emb|AL078620.2|ATF23K16 Arabidopsis thaliana DNA chromosome 4, BAC clone F23K16 (ESSA project) Length = 129047 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ggtgggtttggagttgtttacaaag 168 ||||||||||||| ||||||||||| Sbjct: 22455 ggtgggtttggagatgtttacaaag 22479
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 354 gtctatgagtacatggcttgtggcagtct 382 ||||||||||||||| || |||||||||| Sbjct: 11207591 gtctatgagtacatgcctagtggcagtct 11207563 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 351 cttgtctatgagtacatggcttgtggcagtctt 383 |||||||||||||||||| || |||||| |||| Sbjct: 11157136 cttgtctatgagtacatgtctagtggcaatctt 11157104
>dbj|AP005689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0042H24 Length = 186313 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 354 gtctatgagtacatggcttgtggcagtct 382 ||||||||||||||| || |||||||||| Sbjct: 42763 gtctatgagtacatgcctagtggcagtct 42735
>dbj|AP005685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0004P20 Length = 160410 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 351 cttgtctatgagtacatggcttgtggcagtctt 383 |||||||||||||||||| || |||||| |||| Sbjct: 115943 cttgtctatgagtacatgtctagtggcaatctt 115911
>gb|BC084853.1| Xenopus laevis hypothetical LOC495385, mRNA (cDNA clone MGC:85484 IMAGE:6938986), complete cds Length = 1244 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 189 agaataggttttaaatccaca 209 ||||||||||||||||||||| Sbjct: 530 agaataggttttaaatccaca 510
>gb|AF017056.1|AF017056 Arabidopsis thaliana brassinosteroid insensitive 1 (BRI1) gene, complete cds Length = 4700 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 144 ggtgggtttggagttgtttacaaag 168 ||||||||||||| ||||||||||| Sbjct: 3366 ggtgggtttggagatgtttacaaag 3390
>ref|NM_125967.3| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine kinase AT5G65700 mRNA, complete cds Length = 3380 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tacttgtctatgagtacatg 368 |||||||||||||||||||| Sbjct: 2363 tacttgtctatgagtacatg 2382
>ref|NM_113279.2| Arabidopsis thaliana ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT3G23750 mRNA, complete cds Length = 2952 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 aggttacttgtctatgagtacatg 368 ||||| |||||||||||||||||| Sbjct: 1945 aggttgcttgtctatgagtacatg 1968
>gb|AE014826.1| Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence Length = 250663 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tgtcattgatgaaaatgtta 189 |||||||||||||||||||| Sbjct: 57558 tgtcattgatgaaaatgtta 57577
>gb|AY488277.1| Grantiella picta NADH dehydrogenase subunit 2 (ND2) gene, partial cds; mitochondrial Length = 1040 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tggctattgctgcgagggtt 339 |||||||||||||||||||| Sbjct: 844 tggctattgctgcgagggtt 825
>gb|DQ415920.1| Cleome spinosa clone BAC Cs3, complete sequence Length = 141360 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 453 gcagcaggggggcttgagtatctccacg 480 |||||| ||||||||| ||||||||||| Sbjct: 115891 gcagcaagggggcttgtgtatctccacg 115918
>gb|DQ469718.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein ABC1063 mRNA, complete cds Length = 1519 Score = 40.1 bits (20), Expect = 6.8 Identities = 35/40 (87%) Strand = Plus / Plus Query: 253 acaaggaatggttggcagaagtcaattatcttgggcaact 292 ||||||||||| |||| || |||||||| || |||||||| Sbjct: 488 acaaggaatggctggctgaggtcaattacctggggcaact 527
>gb|DQ469716.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein ABC1040 mRNA, complete cds Length = 2534 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggttggcagaagtcaatta 280 |||||||||||||||||||| Sbjct: 1203 tggttggcagaagtcaatta 1222
>gb|DQ469715.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein ABC1036 mRNA, complete cds Length = 2569 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tggttggcagaagtcaatta 280 |||||||||||||||||||| Sbjct: 1203 tggttggcagaagtcaatta 1222
>gb|AC133865.2| Homo sapiens chromosome 1 clone RP11-93N20, complete sequence Length = 78250 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 tgtcattgatgaaaatgttagaat 193 |||||||||||||||| ||||||| Sbjct: 27657 tgtcattgatgaaaattttagaat 27634
>emb|BX927353.7| Zebrafish DNA sequence from clone CH211-83F14 in linkage group 2, complete sequence Length = 94558 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 aaaggtgtcattgatgaaaa 184 |||||||||||||||||||| Sbjct: 87555 aaaggtgtcattgatgaaaa 87574
>gb|AC084793.5| Homo sapiens BAC clone CTD-2651D18 from 7, complete sequence Length = 46289 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tccacacaggttgctgtgaa 223 |||||||||||||||||||| Sbjct: 20681 tccacacaggttgctgtgaa 20662
>gb|AC019063.4| Homo sapiens BAC clone RP11-144H20 from 7, complete sequence Length = 187282 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tggaaatgttaatatcttcacata 88 |||||| ||||||||||||||||| Sbjct: 169480 tggaaacgttaatatcttcacata 169457
>gb|AC160109.2| Mus musculus BAC clone RP24-169I22 from chromosome 13, complete sequence Length = 151819 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 246 cagggagacaaggaatggttggcagaag 273 |||||||||||||| |||||||||||| Sbjct: 1621 cagggagacaaggaggggttggcagaag 1648
>emb|AL591473.3| Human DNA sequence from clone RP11-256G5 on chromosome 6 Contains a ribosomal protein L36a (RPL36A) pseudogene, complete sequence Length = 40120 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 tccacacaggttgctgtgaa 223 |||||||||||||||||||| Sbjct: 25422 tccacacaggttgctgtgaa 25441
>emb|AL358116.7| Human DNA sequence from clone RP11-108H13 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 85821 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 tggaaatgttaatatcttcacata 88 ||||||||| |||||||||||||| Sbjct: 76021 tggaaatgtcaatatcttcacata 76044
>emb|AL353626.5| Human DNA sequence from clone RP11-318K12 on chromosome 9 Contains a novel gene, a pseudogene similar to part of membrane component, chromosome 17, surface marker 2 (ovarian carcinoma antigen CA125) (M17S2), a pseudogene similar to part of novel gene (ankyrin-related UNQ2430) and a CpG island, complete sequence Length = 176470 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 tggaaatgttaatatcttcacata 88 |||||||| ||||||||||||||| Sbjct: 134401 tggaaatggtaatatcttcacata 134424
>gb|AC126398.5| Homo sapiens chromosome 11, clone CTD-2005G12, complete sequence Length = 137333 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tggaaatgttaatatcttcacata 88 ||||||||| |||||||||||||| Sbjct: 13773 tggaaatgtgaatatcttcacata 13750 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tggaaatgttaatatcttcacata 88 |||||||| ||||||||||||||| Sbjct: 325 tggaaatggtaatatcttcacata 302
>emb|AL049551.1|HS271N20 Human DNA sequence from clone RP1-271N20 on chromosome 6q11.1-12, complete sequence Length = 65237 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 65 tggaaatgttaatatcttcacata 88 ||||||||| |||||||||||||| Sbjct: 46253 tggaaatgtaaatatcttcacata 46276
>gb|BT008810.1| Arabidopsis thaliana At5g65700 gene, complete cds Length = 3012 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tacttgtctatgagtacatg 368 |||||||||||||||||||| Sbjct: 2297 tacttgtctatgagtacatg 2316
>emb|X07501.1|MINIFH Methanobacterium ivanovii ORF nifH gene (homolog.) Length = 1353 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 gaaggatatggaaatgttaa 76 |||||||||||||||||||| Sbjct: 545 gaaggatatggaaatgttaa 564
>gb|AC144535.4| Homo sapiens 12 BAC RP11-191K23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156422 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tggaaatgttaatatcttcacata 88 |||||| ||||||||||||||||| Sbjct: 12235 tggaaacgttaatatcttcacata 12212 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tggaaatgttaatatcttcacata 88 |||||| ||||||||||||||||| Sbjct: 9646 tggaaacgttaatatcttcacata 9623
>emb|AL021684.1|ATF6H11 Arabidopsis thaliana DNA chromosome 5, BAC clone F6H11 (ESSAII project) Length = 118086 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 tacttgtctatgagtacatg 368 |||||||||||||||||||| Sbjct: 83303 tacttgtctatgagtacatg 83284
>emb|CR931733.2| Medicago truncatula chromosome 5 clone mth2-38a4, COMPLETE SEQUENCE Length = 124746 Score = 40.1 bits (20), Expect = 6.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 266 ggcagaagtcaattatcttgggcaactt 293 |||||||||||||||||| || |||||| Sbjct: 51716 ggcagaagtcaattatctaggccaactt 51743
>gb|U22831.2| Caenorhabditis elegans cosmid F47D12, complete sequence Length = 42275 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 atatggaaatgttaatatct 81 |||||||||||||||||||| Sbjct: 39215 atatggaaatgttaatatct 39196
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 449 cggtgcagcaggggggcttg 468 |||||||||||||||||||| Sbjct: 218481 cggtgcagcaggggggcttg 218500
>gb|AY099814.1| Arabidopsis thaliana receptor protein kinase-like protein (At5g65700) mRNA, complete cds Length = 3265 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tacttgtctatgagtacatg 368 |||||||||||||||||||| Sbjct: 2349 tacttgtctatgagtacatg 2368
>gb|AC182663.2| Populus trichocarpa clone Pop1-16M7, complete sequence Length = 77392 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 tttggagttgtttacaaagg 169 |||||||||||||||||||| Sbjct: 50029 tttggagttgtttacaaagg 50010
>emb|BX248115.12| Zebrafish DNA sequence from clone CH211-208K15 in linkage group 16, complete sequence Length = 211852 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 cattgatgaaaatgttagaa 192 |||||||||||||||||||| Sbjct: 205282 cattgatgaaaatgttagaa 205301
>emb|BX831538.1|CNS0A28X Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH13ZD07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2167 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tacttgtctatgagtacatg 368 |||||||||||||||||||| Sbjct: 1276 tacttgtctatgagtacatg 1295
>gb|AC145543.3| Homo sapiens chromosome UNKNOWN clone RP11-1278L23, complete sequence Length = 221027 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tggaaatgttaatatcttcacata 88 |||||||| ||||||||||||||| Sbjct: 136454 tggaaatggtaatatcttcacata 136431
>gb|AF069296.1|AF069296 Plasmodium falciparum replication factor C3 (rfc3) gene, complete cds Length = 2368 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 170 tgtcattgatgaaaatgtta 189 |||||||||||||||||||| Sbjct: 1196 tgtcattgatgaaaatgtta 1215
>dbj|AP000377.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MYM9 Length = 71178 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 345 aggttacttgtctatgagtacatg 368 ||||| |||||||||||||||||| Sbjct: 34298 aggttgcttgtctatgagtacatg 34321
>dbj|AB010075.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA24 Length = 84440 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 349 tacttgtctatgagtacatg 368 |||||||||||||||||||| Sbjct: 36504 tacttgtctatgagtacatg 36523
>gb|AC157505.2| Medicago truncatula chromosome 2 BAC clone mth2-102e17, complete sequence Length = 93179 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 170 tgtcattgatgaaaatgtta 189 |||||||||||||||||||| Sbjct: 54930 tgtcattgatgaaaatgtta 54911
>gb|AY559313.1| Suberites domuncula Src tyrosine kinase 2 gene, complete cds Length = 3145 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccacacaggttgctgtgaaa 224 |||||||||||||||||||| Sbjct: 2403 ccacacaggttgctgtgaaa 2422
>gb|AY559310.1| Suberites domuncula Src tyrosine kinase 2 mRNA, complete cds Length = 1512 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ccacacaggttgctgtgaaa 224 |||||||||||||||||||| Sbjct: 770 ccacacaggttgctgtgaaa 789
>emb|BX000460.5| Zebrafish DNA sequence from clone CH211-15E22 in linkage group 1, complete sequence Length = 173084 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gttgaactgattggctattg 328 |||||||||||||||||||| Sbjct: 130971 gttgaactgattggctattg 130952
>emb|BX000449.4| Human DNA sequence from clone RP11-287N12 on chromosome 9, complete sequence Length = 164006 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 tggaaatgttaatatcttcacata 88 |||||||| ||||||||||||||| Sbjct: 22628 tggaaatggtaatatcttcacata 22605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,477,523 Number of Sequences: 3902068 Number of extensions: 4477523 Number of successful extensions: 99793 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98473 Number of HSP's gapped (non-prelim): 1317 length of query: 505 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 483 effective length of database: 17,147,199,772 effective search space: 8282097489876 effective search space used: 8282097489876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)