ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet32g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, com... 40 2.3
2emb|CT030195.12| Mouse DNA sequence from clone RP23-191J8 on chr... 40 2.3
3gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome 38 8.9
4gb|AC147887.2| Xenopus tropicalis clone CH216-147L5, complete se... 38 8.9
5gb|AC149694.2| Bos taurus BAC CH240-423C21 (Children's Hospital... 38 8.9
6ref|XM_367305.1| Magnaporthe grisea 70-15 hypothetical protein (... 38 8.9
7gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 38 8.9
8emb|CR388028.12| Zebrafish DNA sequence from clone DKEYP-36B12 i... 38 8.9
9gb|AC073632.4| Homo sapiens BAC clone RP11-202H24 from 2, comple... 38 8.9
10dbj|BS000120.2| Pan troglodytes chromosome 22 clone:RP43-007D11,... 38 8.9
11dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 8.9
12dbj|AP001429.2| Homo sapiens genomic DNA, chromosome 21q22.2, cl... 38 8.9
13gb|AC002114.1|HSAC002114 Human Cosmid g1940a085 from 7q31.3, com... 38 8.9
14emb|AL163192.6|HS298E2 Homo sapiens chromosome 9 BAC RP11-298E2,... 38 8.9
15dbj|AP000150.1| Homo sapiens genomic DNA, chromosome 21q22.2, DS... 38 8.9
16dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrom... 38 8.9
17dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 c... 38 8.9
18dbj|AP000759.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 8.9

>gb|AC154122.7| Mus musculus chromosome 15, clone RP24-62G16, complete sequence
          Length = 215079

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 17    tccaccagcaccactgtgta 36
             ||||||||||||||||||||
Sbjct: 66640 tccaccagcaccactgtgta 66659



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>emb|CT030195.12| Mouse DNA sequence from clone RP23-191J8 on chromosome 13, complete
              sequence
          Length = 219800

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 123    caacctcatccatcatgtca 142
              ||||||||||||||||||||
Sbjct: 156269 caacctcatccatcatgtca 156250



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>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    cggttcttccaccagcacc 28
             |||||||||||||||||||
Sbjct: 52099 cggttcttccaccagcacc 52081



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>gb|AC147887.2| Xenopus tropicalis clone CH216-147L5, complete sequence
          Length = 176251

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   caggttgtgcctgtacttt 159
             |||||||||||||||||||
Sbjct: 49409 caggttgtgcctgtacttt 49391



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>gb|AC149694.2| Bos taurus  BAC CH240-423C21 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 186118

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 154    tactttcttccactacagg 172
              |||||||||||||||||||
Sbjct: 163173 tactttcttccactacagg 163155



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>ref|XM_367305.1| Magnaporthe grisea 70-15 hypothetical protein (MG07230.4) partial
           mRNA
          Length = 1455

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 56  agctgccgttgagtgggac 74
           |||||||||||||||||||
Sbjct: 898 agctgccgttgagtgggac 880



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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 14      tcttccaccagcaccactg 32
               |||||||||||||||||||
Sbjct: 1297877 tcttccaccagcaccactg 1297859



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>emb|CR388028.12| Zebrafish DNA sequence from clone DKEYP-36B12 in linkage group 8,
              complete sequence
          Length = 173485

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 158    ttcttccactacaggtgtg 176
              |||||||||||||||||||
Sbjct: 114586 ttcttccactacaggtgtg 114568



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>gb|AC073632.4| Homo sapiens BAC clone RP11-202H24 from 2, complete sequence
          Length = 40132

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 121   gtcaacctcatccatcatgtcag 143
             ||||| |||||||||||||||||
Sbjct: 27937 gtcaaactcatccatcatgtcag 27915



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>dbj|BS000120.2| Pan troglodytes chromosome 22 clone:RP43-007D11, map 22, complete
              sequences
          Length = 219802

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 146    tgtgcctgtactttcttcc 164
              |||||||||||||||||||
Sbjct: 119331 tgtgcctgtactttcttcc 119313



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>dbj|AP001728.1| Homo sapiens genomic DNA, chromosome 21q, section 72/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 146   tgtgcctgtactttcttcc 164
             |||||||||||||||||||
Sbjct: 15627 tgtgcctgtactttcttcc 15609



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>dbj|AP001429.2| Homo sapiens genomic DNA, chromosome 21q22.2, clone:T1212, LB7T-ERG
             region, complete sequences
          Length = 85691

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 146   tgtgcctgtactttcttcc 164
             |||||||||||||||||||
Sbjct: 67087 tgtgcctgtactttcttcc 67069



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>gb|AC002114.1|HSAC002114 Human Cosmid g1940a085 from 7q31.3, complete sequence
          Length = 45852

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 134  atcatgtcaggttgtgcctgtac 156
            |||| ||||||||||||||||||
Sbjct: 9951 atcaagtcaggttgtgcctgtac 9973



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 134  atcatgtcaggttgtgcctgtac 156
            |||| ||||||||||||||||||
Sbjct: 9881 atcaagtcaggttgtgcctgtac 9903



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>emb|AL163192.6|HS298E2 Homo sapiens chromosome 9 BAC RP11-298E2, complete sequence
          Length = 140741

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 14     tcttccaccagcaccactg 32
              |||||||||||||||||||
Sbjct: 109039 tcttccaccagcaccactg 109021



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>dbj|AP000150.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone
             D47-S479, segment 2/16, complete sequence
          Length = 100000

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 146   tgtgcctgtactttcttcc 164
             |||||||||||||||||||
Sbjct: 85044 tgtgcctgtactttcttcc 85026



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>dbj|AP000009.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 2/13
          Length = 152345

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 146   tgtgcctgtactttcttcc 164
             |||||||||||||||||||
Sbjct: 85044 tgtgcctgtactttcttcc 85026



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>dbj|D83253.1| Homo sapiens genomic DNA, chromosome 21q22.2, p1 clone: T1212 and
             T1601, complete sequence
          Length = 110174

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 146   tgtgcctgtactttcttcc 164
             |||||||||||||||||||
Sbjct: 67082 tgtgcctgtactttcttcc 67064



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>dbj|AP000759.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-755F10, complete
             sequence
          Length = 78095

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 121   gtcaacctcatccatcatgtcaggttg 147
             ||||||||||||||| |||||| ||||
Sbjct: 65631 gtcaacctcatccatgatgtcatgttg 65605


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,294,541
Number of Sequences: 3902068
Number of extensions: 1294541
Number of successful extensions: 89451
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89390
Number of HSP's gapped (non-prelim): 61
length of query: 181
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 159
effective length of database: 17,147,199,772
effective search space: 2726404763748
effective search space used: 2726404763748
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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