ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet32f11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 375 ggccgcacaccagtaaacagat 396 |||||||||||||||||||||| Sbjct: 2388757 ggccgcacaccagtaaacagat 2388778
>dbj|D87924.1| Actinomadura hibisca polyketide synthase genes for pradimicin, complete cds Length = 8168 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 ggcggcagcgcaccgtcgccg 232 ||||||||||||||||||||| Sbjct: 4707 ggcggcagcgcaccgtcgccg 4727
>gb|AY554266.1| Populus tremula var. glandulosa 26S ribosomal RNA gene, partial sequence; 26S-18S intergenic spacer, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 2909 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 cgcttcccgatcccatcccatccc 82 |||| ||||||||||||||||||| Sbjct: 138 cgctgcccgatcccatcccatccc 115
>gb|AY554270.1| Populus tremula var. davidiana 26S ribosomal RNA gene, partial sequence; 26S-18S intergenic spacer, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 2909 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 cgcttcccgatcccatcccatccc 82 |||| ||||||||||||||||||| Sbjct: 138 cgctgcccgatcccatcccatccc 115
>gb|AY554269.1| Populus tomentosa 26S ribosomal RNA gene, partial sequence; 26S-18S intergenic spacer, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 2909 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 cgcttcccgatcccatcccatccc 82 |||| ||||||||||||||||||| Sbjct: 138 cgctgcccgatcccatcccatccc 115
>gb|AY554268.1| Populus alba x Populus tremula var. glandulosa 26S ribosomal RNA gene, partial sequence; 26S-18S intergenic spacer, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 2909 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 cgcttcccgatcccatcccatccc 82 |||| ||||||||||||||||||| Sbjct: 138 cgctgcccgatcccatcccatccc 115
>gb|AY554267.1| Populus alba 26S ribosomal RNA gene, partial sequence; 26S-18S intergenic spacer, complete sequence; and 18S ribosomal RNA gene, partial sequence Length = 2911 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 cgcttcccgatcccatcccatccc 82 |||| ||||||||||||||||||| Sbjct: 138 cgctgcccgatcccatcccatccc 115
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 gatggccgcacaccagtaaa 391 |||||||||||||||||||| Sbjct: 1116058 gatggccgcacaccagtaaa 1116077
>gb|AF492457.1| Azospirillum brasilense D-alanine:D-alanine ligase (ddlB), partial cds; and cell division fts gene cluster, partial sequence Length = 3824 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cgcggcggacgtcgctctcc 203 |||||||||||||||||||| Sbjct: 2013 cgcggcggacgtcgctctcc 1994
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ctcgacgcggcggacgtcgc 198 |||||||||||||||||||| Sbjct: 6076816 ctcgacgcggcggacgtcgc 6076797
>gb|AC154317.2| Mus musculus BAC clone RP23-346H4 from chromosome 13, complete sequence Length = 205164 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 aagtccactgagaaagatga 315 |||||||||||||||||||| Sbjct: 88903 aagtccactgagaaagatga 88922
>emb|BX511097.21| Zebrafish DNA sequence from clone DKEYP-93C5 in linkage group 2, complete sequence Length = 134883 Score = 40.1 bits (20), Expect = 6.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 139 ccccaggagggccagggagcaatcctcc 166 |||| ||||| ||||||||||||||||| Sbjct: 95616 cccctggaggaccagggagcaatcctcc 95643 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,989,800 Number of Sequences: 3902068 Number of extensions: 2989800 Number of successful extensions: 65383 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65214 Number of HSP's gapped (non-prelim): 169 length of query: 443 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 421 effective length of database: 17,147,199,772 effective search space: 7218971104012 effective search space used: 7218971104012 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
