Clone Information

BLAST Search Result

Clone Name	baet32c09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_468292.1\| Oryza sativa (japonica cultivar-group), mRNA	559	e-156
2	dbj\|AK065642.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	559	e-156
3	dbj\|AK073740.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	551	e-154
4	gb\|AY105709.1\| Zea mays PCO116780 mRNA sequence	462	e-127
5	gb\|AC069158.6\| Genomic Sequence for Oryza sativa, Nipponbare str...	238	1e-59
6	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	238	1e-59
7	dbj\|AP004240.3\| Oryza sativa (japonica cultivar-group) genomic D...	238	1e-59
8	dbj\|AP004153.3\| Oryza sativa (japonica cultivar-group) genomic D...	238	1e-59
9	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
10	dbj\|AP003142.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.41
11	emb\|BX950851.1\| Erwinia carotovora subsp. atroseptica SCRI1043, ...	42	1.6
12	emb\|AJ720994.1\| Gallus gallus mRNA for hypothetical protein, clo...	42	1.6
13	gb\|AC091223.2\| Drosophila melanogaster 3L BAC RP98-48G6 (Roswell...	42	1.6
14	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
15	dbj\|AP005537.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
16	dbj\|AP005301.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
17	gb\|AE003541.3\| Drosophila melanogaster chromosome 3L, section 44...	42	1.6
18	gb\|AC155172.4\| Mus musculus BAC clone RP23-36N9 from chromosome ...	42	1.6
19	gb\|CP000031.1\| Silicibacter pomeroyi DSS-3, complete genome	40	6.4
20	ref\|NM_188945.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.4
21	ref\|XM_471744.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.4
22	gb\|AC132441.3\| Mus musculus BAC clone RP23-239J2 from chromosome...	40	6.4
23	gb\|AC090419.7\| Homo sapiens chromosome 17, clone CTD-2107B16, co...	40	6.4
24	emb\|AL731596.3\|OSJN00236 Oryza sativa genomic DNA, chromosome 4,...	40	6.4
25	gb\|DQ432014.1\| Triticum aestivum vacuolar proton-ATPase subunit ...	40	6.4
26	gb\|AC093181.5\| Oryza sativa chromosome 10 BAC OSJNBb0089F16 geno...	40	6.4
27	gb\|AC079852.3\| Oryza sativa chromosome 10 clone OSJNBa0034A02, c...	40	6.4
28	gb\|AC074105.3\| Oryza sativa chromosome 10 clone OSJNBa0030B02, c...	40	6.4
29	gb\|AE017285.1\| Desulfovibrio vulgaris subsp. vulgaris str. Hilde...	40	6.4
30	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
31	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
32	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
33	gb\|AC139677.4\| Homo sapiens chromosome 17, clone RP11-1070B7, co...	40	6.4
34	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	6.4
35	dbj\|BA000012.4\| Mesorhizobium loti MAFF303099 DNA, complete genome	40	6.4
36	dbj\|AP003724.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
37	gb\|AE005077.1\| Halobacterium sp. NRC-1 section 108 of 170 of the...	40	6.4
38	dbj\|AP005731.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
39	dbj\|AP005163.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.4
40	gb\|CP000009.1\| Gluconobacter oxydans 621H, complete genome	40	6.4
41	gb\|AC005829.1\|AC005829 Homo sapiens chromosome 17, clone hRPK.25...	40	6.4
42	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.4
43	gb\|AC127032.8\| Homo sapiens chromosome 17, clone RP11-162O14, co...	40	6.4

>ref|XM_468292.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1238

 Score =  559 bits (282), Expect = e-156
 Identities = 384/418 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  ggcggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagc 111
           ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 86  ggcggtggatggcgatggcgggcggcggggggctcaaccggtcgtcgtcgagggggcagc 145

                                                                       
Query: 112 tgccgccgcaggagctgctcgacgatctctgcagccggttcgtgctgaacgtgcccaagg 171
           |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 146 tgccgccgcaggagcttctcgacgatctctgcagccgcttcgtgctcaacgtgcccaagg 205

                                                                       
Query: 172 aggacctggagtcgttcgagcggatcctgttcctgctggagcaggcgcactggttctacg 231
           ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 aggatttggagtcgttcgagcggatcctgttcttgctggagcaggcgcactggttctacg 265

                                                                       
Query: 232 aggacaactccgtggagcacaacccctccctcaagtccctctccttcaaggacttcacct 291
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||  
Sbjct: 266 aggacaactccgtcgagcacaacccctccctcaagtcgctctccttcaaggacttcacta 325

                                                                       
Query: 292 ccctcatgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatct 351
           | ||||||||||| ||||| || || |||||||| |||||||||||||| || ||||| |
Sbjct: 326 cgctcatgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacattt 385

                                                                       
Query: 352 acaaggacttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatg 411
           ||||||| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||
Sbjct: 386 acaaggatttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatg 445

                                                                     
Query: 412 acaactatgacaggtgcttacttgtgaagggatggaagtctagtgccagctggagttt 469
           ||| ||| || | |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 acacctacgagaagtgcttgcttgtgaagggatggaagtctagcgccagctggagttt 503

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>dbj|AK065642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013037H08, full
           insert sequence
          Length = 2769

 Score =  559 bits (282), Expect = e-156
 Identities = 384/418 (91%)
 Strand = Plus / Minus

                                                                       
Query: 52  ggcggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagc 111
           ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 616 ggcggtggatggcgatggcgggcggcggggggctcaaccggtcgtcgtcgagggggcagc 557

                                                                       
Query: 112 tgccgccgcaggagctgctcgacgatctctgcagccggttcgtgctgaacgtgcccaagg 171
           |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 556 tgccgccgcaggagcttctcgacgatctctgcagccgcttcgtgctcaacgtgcccaagg 497

                                                                       
Query: 172 aggacctggagtcgttcgagcggatcctgttcctgctggagcaggcgcactggttctacg 231
           ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 496 aggatttggagtcgttcgagcggatcctgttcttgctggagcaggcgcactggttctacg 437

                                                                       
Query: 232 aggacaactccgtggagcacaacccctccctcaagtccctctccttcaaggacttcacct 291
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||  
Sbjct: 436 aggacaactccgtcgagcacaacccctccctcaagtcgctctccttcaaggacttcacta 377

                                                                       
Query: 292 ccctcatgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatct 351
           | ||||||||||| ||||| || || |||||||| |||||||||||||| || ||||| |
Sbjct: 376 cgctcatgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacattt 317

                                                                       
Query: 352 acaaggacttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatg 411
           ||||||| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||
Sbjct: 316 acaaggatttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatg 257

                                                                     
Query: 412 acaactatgacaggtgcttacttgtgaagggatggaagtctagtgccagctggagttt 469
           ||| ||| || | |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 256 acacctacgagaagtgcttgcttgtgaagggatggaagtctagcgccagctggagttt 199

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>dbj|AK073740.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K03, full
           insert sequence
          Length = 1238

 Score =  551 bits (278), Expect = e-154
 Identities = 383/418 (91%)
 Strand = Plus / Plus

                                                                       
Query: 52  ggcggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagc 111
           ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 86  ggcggtggatggcgatggcgggcggcggggggctcaaccggtcgtcgtcgagggggcagc 145

                                                                       
Query: 112 tgccgccgcaggagctgctcgacgatctctgcagccggttcgtgctgaacgtgcccaagg 171
           |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||
Sbjct: 146 tgccgccgcaggagcttctcgacgatctctgcagccgcttcgtgctcaacgtgcccaagg 205

                                                                       
Query: 172 aggacctggagtcgttcgagcggatcctgttcctgctggagcaggcgcactggttctacg 231
           ||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 206 aggatttggagtcgttcgagcggatcctgttcttgctggagcaggcgcactggttctacg 265

                                                                       
Query: 232 aggacaactccgtggagcacaacccctccctcaagtccctctccttcaaggacttcacct 291
           ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||  
Sbjct: 266 aggacaactccgtcgagcacaacccctccctcaagtcgctctccttcaaggacttcacta 325

                                                                       
Query: 292 ccctcatgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatct 351
           | ||||||||||| ||||| || || |||||||| |||| ||||||||| || ||||| |
Sbjct: 326 cgctcatgttcaatagctgtgctgcgctcaggccataccacgcgcaccttgatgacattt 385

                                                                       
Query: 352 acaaggacttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatg 411
           ||||||| ||||| ||||| |||||||| ||||| |||| ||||||||||||||||||||
Sbjct: 386 acaaggatttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatg 445

                                                                     
Query: 412 acaactatgacaggtgcttacttgtgaagggatggaagtctagtgccagctggagttt 469
           ||| ||| || | |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 446 acacctacgagaagtgcttgcttgtgaagggatggaagtctagcgccagctggagttt 503

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>gb|AY105709.1| Zea mays PCO116780 mRNA sequence
          Length = 1656

 Score =  462 bits (233), Expect = e-127
 Identities = 368/413 (89%)
 Strand = Plus / Plus

                                                                       
Query: 54  cggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagctg 113
           ||||||||| |||||||||| ||||||||||| |||||||| || ||| |||||||||||
Sbjct: 276 cggtggatgacgatggcgggtggcgggggactgaaccggtcttcatcgagggggcagctg 335

                                                                       
Query: 114 ccgccgcaggagctgctcgacgatctctgcagccggttcgtgctgaacgtgcccaaggag 173
           |||||||| |||||||| ||||||||||||||||||||| | ||||| ||||||||||||
Sbjct: 336 ccgccgcaagagctgcttgacgatctctgcagccggttccttctgaatgtgcccaaggag 395

                                                                       
Query: 174 gacctggagtcgttcgagcggatcctgttcctgctggagcaggcgcactggttctacgag 233
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 396 gaactggagtcgttcgagcggatcctgttcctgctggagcaggcgcactggttctatgag 455

                                                                       
Query: 234 gacaactccgtggagcacaacccctccctcaagtccctctccttcaaggacttcacctcc 293
           ||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||
Sbjct: 456 gacaactccgttgagcacaaccccaacctcaagtccctctccttcaaggacttcacttcc 515

                                                                       
Query: 294 ctcatgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctac 353
           ||||||||||| |||||| | || ||| ||||||||  ||||||||| || || ||||||
Sbjct: 516 ctcatgttcaagagctgcactgctctccggccctacatcgcgcacctggatgatatctac 575

                                                                       
Query: 354 aaggacttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgac 413
           |||||||||| | |||||||||| || || || || ||||||||||||||||| || |||
Sbjct: 576 aaggacttcaacaactacaagtttcgtgtgcctgtgtccggcgccatcatcctagacgac 635

                                                                
Query: 414 aactatgacaggtgcttacttgtgaagggatggaagtctagtgccagctggag 466
           |  ||||| |||||||| ||||| || ||||||||| || | |||||||||||
Sbjct: 636 acttatgagaggtgcttgcttgttaaaggatggaaggctggggccagctggag 688

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>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0049O12, from chromosome 2, complete sequence
          Length = 155154

 Score =  238 bits (120), Expect = 1e-59
 Identities = 141/148 (95%)
 Strand = Plus / Plus

                                                                          
Query: 142    gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 201
              ||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 104802 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 104861

                                                                          
Query: 202    tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 261
              || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 104862 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 104921

                                          
Query: 262    tcaagtccctctccttcaaggacttcac 289
              ||||||| ||||||||||||||||||||
Sbjct: 104922 tcaagtcgctctccttcaaggacttcac 104949



 Score =  155 bits (78), Expect = 2e-34
 Identities = 90/94 (95%)
 Strand = Plus / Plus

                                                                          
Query: 52     ggcggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagc 111
              ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 104590 ggcggtggatggcgatggcgggcggcggggggctcaaccggtcgtcgtcgagggggcagc 104649

                                                
Query: 112    tgccgccgcaggagctgctcgacgatctctgcag 145
              |||||||||||||||| |||||||||||||||||
Sbjct: 104650 tgccgccgcaggagcttctcgacgatctctgcag 104683



 Score =  121 bits (61), Expect = 2e-24
 Identities = 103/117 (88%)
 Strand = Plus / Plus

                                                                          
Query: 298    tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 357
              ||||||| ||||| || || |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 105060 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 105119

                                                                       
Query: 358    acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 414
              | ||||| ||||| |||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 105120 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 105176



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Plus

                                                           
Query: 425    gtgcttacttgtgaagggatggaagtctagtgccagctggagttt 469
              |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 105535 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttt 105579

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  238 bits (120), Expect = 1e-59
 Identities = 141/148 (95%)
 Strand = Plus / Minus

                                                                            
Query: 142      gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 201
                ||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 34400304 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 34400245

                                                                            
Query: 202      tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 261
                || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 34400244 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 34400185

                                            
Query: 262      tcaagtccctctccttcaaggacttcac 289
                ||||||| ||||||||||||||||||||
Sbjct: 34400184 tcaagtcgctctccttcaaggacttcac 34400157



 Score =  155 bits (78), Expect = 2e-34
 Identities = 90/94 (95%)
 Strand = Plus / Minus

                                                                            
Query: 52       ggcggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagc 111
                ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 34400516 ggcggtggatggcgatggcgggcggcggggggctcaaccggtcgtcgtcgagggggcagc 34400457

                                                  
Query: 112      tgccgccgcaggagctgctcgacgatctctgcag 145
                |||||||||||||||| |||||||||||||||||
Sbjct: 34400456 tgccgccgcaggagcttctcgacgatctctgcag 34400423



 Score =  121 bits (61), Expect = 2e-24
 Identities = 103/117 (88%)
 Strand = Plus / Minus

                                                                            
Query: 298      tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 357
                ||||||| ||||| || || |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 34400046 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 34399987

                                                                         
Query: 358      acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 414
                | ||||| ||||| |||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 34399986 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 34399930



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                             
Query: 425      gtgcttacttgtgaagggatggaagtctagtgccagctggagttt 469
                |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 34399571 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttt 34399527

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>dbj|AP004240.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1548_F12
          Length = 118814

 Score =  238 bits (120), Expect = 1e-59
 Identities = 141/148 (95%)
 Strand = Plus / Minus

                                                                         
Query: 142   gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 201
             ||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 97951 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 97892

                                                                         
Query: 202   tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 261
             || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 97891 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 97832

                                         
Query: 262   tcaagtccctctccttcaaggacttcac 289
             ||||||| ||||||||||||||||||||
Sbjct: 97831 tcaagtcgctctccttcaaggacttcac 97804



 Score =  155 bits (78), Expect = 2e-34
 Identities = 90/94 (95%)
 Strand = Plus / Minus

                                                                         
Query: 52    ggcggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagc 111
             ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 98163 ggcggtggatggcgatggcgggcggcggggggctcaaccggtcgtcgtcgagggggcagc 98104

                                               
Query: 112   tgccgccgcaggagctgctcgacgatctctgcag 145
             |||||||||||||||| |||||||||||||||||
Sbjct: 98103 tgccgccgcaggagcttctcgacgatctctgcag 98070



 Score =  121 bits (61), Expect = 2e-24
 Identities = 103/117 (88%)
 Strand = Plus / Minus

                                                                         
Query: 298   tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 357
             ||||||| ||||| || || |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 97693 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 97634

                                                                      
Query: 358   acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 414
             | ||||| ||||| |||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 97633 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 97577



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 425   gtgcttacttgtgaagggatggaagtctagtgccagctggagttt 469
             |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 97218 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttt 97174

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>dbj|AP004153.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1111_C07
          Length = 115190

 Score =  238 bits (120), Expect = 1e-59
 Identities = 141/148 (95%)
 Strand = Plus / Minus

                                                                         
Query: 142   gcagccggttcgtgctgaacgtgcccaaggaggacctggagtcgttcgagcggatcctgt 201
             ||||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 16546 gcagccgcttcgtgctcaacgtgcccaaggaggatttggagtcgttcgagcggatcctgt 16487

                                                                         
Query: 202   tcctgctggagcaggcgcactggttctacgaggacaactccgtggagcacaacccctccc 261
             || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 16486 tcttgctggagcaggcgcactggttctacgaggacaactccgtcgagcacaacccctccc 16427

                                         
Query: 262   tcaagtccctctccttcaaggacttcac 289
             ||||||| ||||||||||||||||||||
Sbjct: 16426 tcaagtcgctctccttcaaggacttcac 16399



 Score =  155 bits (78), Expect = 2e-34
 Identities = 90/94 (95%)
 Strand = Plus / Minus

                                                                         
Query: 52    ggcggtggatggcgatggcgggcggcgggggactcaaccggtcatcgtcgcgggggcagc 111
             ||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||
Sbjct: 16758 ggcggtggatggcgatggcgggcggcggggggctcaaccggtcgtcgtcgagggggcagc 16699

                                               
Query: 112   tgccgccgcaggagctgctcgacgatctctgcag 145
             |||||||||||||||| |||||||||||||||||
Sbjct: 16698 tgccgccgcaggagcttctcgacgatctctgcag 16665



 Score =  121 bits (61), Expect = 2e-24
 Identities = 103/117 (88%)
 Strand = Plus / Minus

                                                                         
Query: 298   tgttcaacagctgcgccgccctcaggccctaccgcgcgcacctcgacgacatctacaagg 357
             ||||||| ||||| || || |||||||| |||||||||||||| || ||||| |||||||
Sbjct: 16288 tgttcaatagctgtgctgcgctcaggccataccgcgcgcaccttgatgacatttacaagg 16229

                                                                      
Query: 358   acttcacccactacaagttccgcgtccccgtctccggcgccatcatcctcgatgaca 414
             | ||||| ||||| |||||||| ||||| |||| |||||||||||||||||||||||
Sbjct: 16228 atttcactcactataagttccgtgtccctgtctgcggcgccatcatcctcgatgaca 16172



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 43/45 (95%)
 Strand = Plus / Minus

                                                          
Query: 425   gtgcttacttgtgaagggatggaagtctagtgccagctggagttt 469
             |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct: 15813 gtgcttgcttgtgaagggatggaagtctagcgccagctggagttt 15769

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 57       tggatggcgatggcgggcggcg 78
                ||||||||||||||||||||||
Sbjct: 30511893 tggatggcgatggcgggcggcg 30511872

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>dbj|AP003142.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0435H01
          Length = 160141

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 57     tggatggcgatggcgggcggcg 78
              ||||||||||||||||||||||
Sbjct: 140156 tggatggcgatggcgggcggcg 140135

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>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 194     gatcctgttcctgctggagcaggcg 218
               |||||||||||||||||||| ||||
Sbjct: 4438319 gatcctgttcctgctggagctggcg 4438295

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>emb|AJ720994.1| Gallus gallus mRNA for hypothetical protein, clone 32b9
          Length = 1365

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   gcggtggatggcgatggcggg 73
            |||||||||||||||||||||
Sbjct: 1011 gcggtggatggcgatggcggg 991

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>gb|AC091223.2| Drosophila melanogaster 3L BAC RP98-48G6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170988

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    gcgagcgcgagagcgagtggg 53
             |||||||||||||||||||||
Sbjct: 58935 gcgagcgcgagagcgagtggg 58915

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 59       gatggcgatggcgggcggcgg 79
                |||||||||||||||||||||
Sbjct: 20253681 gatggcgatggcgggcggcgg 20253661



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 53       gcggtggatggcgatggcgg 72
                ||||||||||||||||||||
Sbjct: 10406666 gcggtggatggcgatggcgg 10406647

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>dbj|AP005537.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OSJNBa0056L09
          Length = 152910

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 59   gatggcgatggcgggcggcgg 79
            |||||||||||||||||||||
Sbjct: 1429 gatggcgatggcgggcggcgg 1409

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>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0077M12
          Length = 145337

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 59     gatggcgatggcgggcggcgg 79
              |||||||||||||||||||||
Sbjct: 119467 gatggcgatggcgggcggcgg 119447

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>gb|AE003541.3| Drosophila melanogaster chromosome 3L, section 44 of 83 of the complete
              sequence
          Length = 265524

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 33     gcgagcgcgagagcgagtggg 53
              |||||||||||||||||||||
Sbjct: 179087 gcgagcgcgagagcgagtggg 179067

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>gb|AC155172.4| Mus musculus BAC clone RP23-36N9 from chromosome 14, complete sequence
          Length = 255753

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 256    cctccctcaagtccctctcct 276
              |||||||||||||||||||||
Sbjct: 157657 cctccctcaagtccctctcct 157677

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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      tggcgatggcgggcggcggg 80
               ||||||||||||||||||||
Sbjct: 3959720 tggcgatggcgggcggcggg 3959701

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>ref|NM_188945.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 240

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 59  gatggcgatggcgggcggcg 78
           ||||||||||||||||||||
Sbjct: 174 gatggcgatggcgggcggcg 193

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>ref|XM_471744.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1611

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 64  cgatggcgggcggcggggga 83
           ||||||||||||||||||||
Sbjct: 238 cgatggcgggcggcggggga 257

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>gb|AC132441.3| Mus musculus BAC clone RP23-239J2 from chromosome 18, complete sequence
          Length = 189507

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 251    caacccctccctcaagtccc 270
              ||||||||||||||||||||
Sbjct: 117832 caacccctccctcaagtccc 117851

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>gb|AC090419.7| Homo sapiens chromosome 17, clone CTD-2107B16, complete sequence
          Length = 139585

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    cttcacccactacaagttcc 378
              ||||||||||||||||||||
Sbjct: 126809 cttcacccactacaagttcc 126790

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>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22,
             complete sequence
          Length = 174430

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    cgatggcgggcggcggggga 83
             ||||||||||||||||||||
Sbjct: 79444 cgatggcgggcggcggggga 79463

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>gb|DQ432014.1| Triticum aestivum vacuolar proton-ATPase subunit A mRNA, complete
           cds
          Length = 2358

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 31  gggcgagcgcgagagcgagt 50
           ||||||||||||||||||||
Sbjct: 146 gggcgagcgcgagagcgagt 165

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>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete
             sequence
          Length = 154696

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    gcggtggatggcgatggcgg 72
             ||||||||||||||||||||
Sbjct: 70059 gcggtggatggcgatggcgg 70078

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>gb|AC079852.3| Oryza sativa chromosome 10 clone OSJNBa0034A02, complete sequence
          Length = 185904

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 52     ggcggtggatggcgatggcgggcggcgg 79
              |||||| |||||||||||| ||||||||
Sbjct: 176645 ggcggttgatggcgatggccggcggcgg 176618

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>gb|AC074105.3| Oryza sativa chromosome 10 clone OSJNBa0030B02, complete sequence
          Length = 146836

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 52  ggcggtggatggcgatggcgggcggcgg 79
           |||||| |||||||||||| ||||||||
Sbjct: 541 ggcggttgatggcgatggccggcggcgg 514

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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 246     gagcacaacccctccctcaagtcc 269
               |||||| |||||||||||||||||
Sbjct: 1959469 gagcacgacccctccctcaagtcc 1959446

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 64       cgatggcgggcggcggggga 83
                ||||||||||||||||||||
Sbjct: 13965564 cgatggcgggcggcggggga 13965583

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 53       gcggtggatggcgatggcgg 72
                ||||||||||||||||||||
Sbjct: 10911949 gcggtggatggcgatggcgg 10911968



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 52      ggcggtggatggcgatggcgggcggcgg 79
               |||||| |||||||||||| ||||||||
Sbjct: 2673765 ggcggttgatggcgatggccggcggcgg 2673738

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 64       cgatggcgggcggcggggga 83
                ||||||||||||||||||||
Sbjct: 22469485 cgatggcgggcggcggggga 22469504

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>gb|AC139677.4| Homo sapiens chromosome 17, clone RP11-1070B7, complete sequence
          Length = 179564

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 359    cttcacccactacaagttcc 378
              ||||||||||||||||||||
Sbjct: 154172 cttcacccactacaagttcc 154191

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     cgccgcaggagctgctcgac 134
               ||||||||||||||||||||
Sbjct: 4326476 cgccgcaggagctgctcgac 4326495



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 32      ggcgagcgcgagagcgagtgggcg 55
               |||||||||||||||| |||||||
Sbjct: 1505127 ggcgagcgcgagagcgggtgggcg 1505104

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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 110     gctgccgccgcaggagctgc 129
               ||||||||||||||||||||
Sbjct: 6752562 gctgccgccgcaggagctgc 6752581

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>dbj|AP003724.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0498C03
          Length = 146394

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     cgatggcgggcggcggggga 83
              ||||||||||||||||||||
Sbjct: 106618 cgatggcgggcggcggggga 106637

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>gb|AE005077.1| Halobacterium sp. NRC-1 section 108 of 170 of the complete genome
          Length = 14625

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   gcaggagctgctcgacgatctctg 142
             |||||||||| |||||||||||||
Sbjct: 11645 gcaggagctggtcgacgatctctg 11622

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>dbj|AP005731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0091D16
          Length = 174222

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     gcggtggatggcgatggcgg 72
              ||||||||||||||||||||
Sbjct: 107624 gcggtggatggcgatggcgg 107605

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>dbj|AP005163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0053M06
          Length = 175416

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    gcggtggatggcgatggcgg 72
             ||||||||||||||||||||
Sbjct: 29257 gcggtggatggcgatggcgg 29238

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>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome
          Length = 2702173

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 187     tcgagcggatcctgttcctg 206
               ||||||||||||||||||||
Sbjct: 1303685 tcgagcggatcctgttcctg 1303704

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>gb|AC005829.1|AC005829 Homo sapiens chromosome 17, clone hRPK.259_G_18, complete sequence
          Length = 170030

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    cttcacccactacaagttcc 378
              ||||||||||||||||||||
Sbjct: 115545 cttcacccactacaagttcc 115526

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 53       gcggtggatggcgatggcgg 72
                ||||||||||||||||||||
Sbjct: 10917989 gcggtggatggcgatggcgg 10918008



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 52      ggcggtggatggcgatggcgggcggcgg 79
               |||||| |||||||||||| ||||||||
Sbjct: 2673716 ggcggttgatggcgatggccggcggcgg 2673689

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>gb|AC127032.8| Homo sapiens chromosome 17, clone RP11-162O14, complete sequence
          Length = 187685

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 359    cttcacccactacaagttcc 378
              ||||||||||||||||||||
Sbjct: 141554 cttcacccactacaagttcc 141535


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,396,986
Number of Sequences: 3902068
Number of extensions: 3396986
Number of successful extensions: 76168
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75133
Number of HSP's gapped (non-prelim): 1035
length of query: 476
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 454
effective length of database: 17,147,199,772
effective search space: 7784828696488
effective search space used: 7784828696488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result