ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet32c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APG_BRANA (P40603) Anter-specific proline-rich protein APG (Prot... 78 9e-15
2APG_ARATH (P40602) Anter-specific proline-rich protein APG precu... 71 1e-12
3FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51... 38 0.011
4SFAH_HELAN (P81098) Seed fatty acyl-ester hydrolase (EC 3.1.1.1)... 38 0.014
5EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule... 36 0.053
6SYT_STRP6 (Q5XDC4) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 30 2.9
7MUTS_WOLPM (P61673) DNA mismatch repair protein mutS 30 2.9
8SYT_STRP8 (Q8P234) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 29 4.9
9SYT_STRP3 (Q8K8C0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 29 4.9
10SYT_STRP1 (Q9A115) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threon... 29 4.9
11KPRS_CLOTE (Q899I8) Ribose-phosphate pyrophosphokinase (EC 2.7.6... 28 8.4

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +3

Query: 228 VPCYFVFGDSLVDNGNNNDIASLARANYPPYGIDFP-GGATGRFSNGLTTVDAISRLLGF 404
           +P  F FGDS+ D GNNN++ +  + NY PYG+DFP G ATGRFSNG    D IS+ LG 
Sbjct: 123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFSNGRVASDYISKYLGV 182

Query: 405 DDYIPAY 425
            + +PAY
Sbjct: 183 KEIVPAY 189



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>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor|
          Length = 534

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
 Frame = +3

Query: 228 VPCYFVFGDSLVDNGNNNDIASLARANYPPYGIDFP-GGATGRFSNGLTTVDAISRLLGF 404
           +P  F FGDS+ D GNNN++ +  ++NY PYG+DF    ATGRFSNG+   D +++ +G 
Sbjct: 202 IPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMGV 261

Query: 405 DDYIPAY 425
            + +PAY
Sbjct: 262 KEIVPAY 268



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>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)|
           (Alpha-L-fucoside fucohydrolase 2)
           (Alpha-1,2-fucosidase) (AtFXG1)
          Length = 372

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 24/65 (36%), Positives = 34/65 (52%)
 Frame = +3

Query: 231 PCYFVFGDSLVDNGNNNDIASLARANYPPYGIDFPGGATGRFSNGLTTVDAISRLLGFDD 410
           P  F FGDS  D G  +  A+  +A  PP+G  F G   GR+ +G   +D I+  LG   
Sbjct: 29  PAIFNFGDSNSDTGGLS--AAFGQAG-PPHGSSFFGSPAGRYCDGRLVIDFIAESLGL-P 84

Query: 411 YIPAY 425
           Y+ A+
Sbjct: 85  YLSAF 89



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>SFAH_HELAN (P81098) Seed fatty acyl-ester hydrolase (EC 3.1.1.1) (Fragment)|
          Length = 18

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 15/18 (83%), Positives = 16/18 (88%)
 Frame = +3

Query: 219 DPQVPCYFVFGDSLVDNG 272
           DPQVP YF+FGDSL DNG
Sbjct: 1   DPQVPXYFIFGDSLYDNG 18



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>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific|
           protein homolog) (Latex allergen Hev b 13)
          Length = 391

 Score = 35.8 bits (81), Expect = 0.053
 Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 231 PCYFVFGDSLVDNGNNNDIASLARANYP---PYGIDFPGGATGRFSNGLTTVDAIS 389
           P  F FGDS      N+D    A A YP   PYG  F   +TGR+S+G   +D I+
Sbjct: 33  PAIFNFGDS------NSDTGGKAAAFYPLNPPYGETFFHRSTGRYSDGRLIIDFIA 82



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>SYT_STRP6 (Q5XDC4) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 647

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +3

Query: 324 IDFPGGATGRFSNGLTTVDAISRLLGFDDYIPAYAGANNDQLL 452
           I FP GA   F +G+TT D I+  L       A AG  NDQL+
Sbjct: 4   ITFPDGAVREFESGVTTFD-IAESLSKSLAKKALAGKFNDQLI 45



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>MUTS_WOLPM (P61673) DNA mismatch repair protein mutS|
          Length = 849

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +3

Query: 243 VFGDSLVDNGNNNDIASLARANYPPYGIDFPGGATGRFSNGLTTVDAI 386
           +  DSL+++ +NN +AS+   N   Y I +   +TG+F + LT++ A+
Sbjct: 140 IIEDSLLEDKSNNYLASIVEQN-DEYAISWLELSTGKFFHTLTSLKAL 186



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>SYT_STRP8 (Q8P234) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 647

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 324 IDFPGGATGRFSNGLTTVDAISRLLGFDDYIPAYAGANNDQLL 452
           I FP GA   F +G+TT D I+  +       A AG  NDQL+
Sbjct: 4   ITFPDGAVREFESGVTTFD-IAESISKSLAKKALAGKFNDQLI 45



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>SYT_STRP3 (Q8K8C0) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 647

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 324 IDFPGGATGRFSNGLTTVDAISRLLGFDDYIPAYAGANNDQLL 452
           I FP GA   F +G+TT D I+  +       A AG  NDQL+
Sbjct: 4   ITFPDGAVREFESGVTTFD-IAESISKSLAKKALAGKFNDQLI 45



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>SYT_STRP1 (Q9A115) Threonyl-tRNA synthetase (EC 6.1.1.3) (Threonine--tRNA|
           ligase) (ThrRS)
          Length = 647

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 324 IDFPGGATGRFSNGLTTVDAISRLLGFDDYIPAYAGANNDQLL 452
           I FP GA   F +G+TT D I+  +       A AG  NDQL+
Sbjct: 4   ITFPDGAVREFESGVTTFD-IAESISKSLAKKALAGKFNDQLI 45



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>KPRS_CLOTE (Q899I8) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 320

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = +3

Query: 270 GNNNDIASLARANYPPYGIDFPGGATGRFSNGLTTVDAISRLLGFDDYIPAYAGAN-NDQ 446
           GN+ND   LA+      G+       GRFS+G  TV+    + G D +I     A  ND 
Sbjct: 15  GNSND--KLAKDIADIVGVPLGSAEVGRFSDGEITVNINETVRGIDAFIIQSTSAPVNDN 72

Query: 447 LL 452
           L+
Sbjct: 73  LM 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.129    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,050,839
Number of Sequences: 219361
Number of extensions: 820476
Number of successful extensions: 3190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3185
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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