ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet32c02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_185146.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1413 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 122 cgccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttc 181 ||||| |||||||| || ||||| ||| | ||||||||||||||||||| |||||| || Sbjct: 61 cgccggcgccacgtcctcctgttcccgctcccgtaccagggccacatcaaccccatgctc 120 Query: 182 cggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacacccacttc 241 ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 121 cggctcgccggcgtcctccgcgcccgcggcttcgccgtcaccgtcttccacacccacttc 180 Query: 242 aacgccccggacccctcgcgccacccggagtaccgcttcgtccccgtccccgacggcatg 301 |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 181 aacgccccggacgccgcgcgccacccggagcaccgcttcgtcgccgtccccgacggcatg 240 Query: 302 tccg---gcccagcacccgtcgctatcgaggacgtcgtcgcccacatcctcgcgctcaac 358 |||| |||| | |||||| | ||| ||||||||| ||||||| |||||||||| Sbjct: 241 tccggccgcccgccgcccgtctccgtcggcgacgtcgtcaagcacatccgcgcgctcaac 300 Query: 359 gccgcgtgcgaggcgcccttccgtgaccgcctagccgccgtcctggaagagtactccagg 418 |||||||||||||| | ||||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 301 gccgcgtgcgaggccgcgttccgggaccgcctcgccgccgtcctggccgagtattccagg 360 Query: 419 gacgccgtggcgtgc 433 ||||| || |||||| Sbjct: 361 gacgctgtcgcgtgc 375
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 122 cgccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttc 181 ||||| |||||||| || ||||| ||| | ||||||||||||||||||| |||||| || Sbjct: 34333116 cgccggcgccacgtcctcctgttcccgctcccgtaccagggccacatcaaccccatgctc 34333175 Query: 182 cggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacacccacttc 241 ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 34333176 cggctcgccggcgtcctccgcgcccgcggcttcgccgtcaccgtcttccacacccacttc 34333235 Query: 242 aacgccccggacccctcgcgccacccggagtaccgcttcgtccccgtccccgacggcatg 301 |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 34333236 aacgccccggacgccgcgcgccacccggagcaccgcttcgtcgccgtccccgacggcatg 34333295 Query: 302 tccg---gcccagcacccgtcgctatcgaggacgtcgtcgcccacatcctcgcgctcaac 358 |||| |||| | |||||| | ||| ||||||||| ||||||| |||||||||| Sbjct: 34333296 tccggccgcccgccgcccgtctccgtcggcgacgtcgtcaagcacatccgcgcgctcaac 34333355 Query: 359 gccgcgtgcgaggcgcccttccgtgaccgcctagccgccgtcctggaagagtactccagg 418 |||||||||||||| | ||||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 34333356 gccgcgtgcgaggccgcgttccgggaccgcctcgccgccgtcctggccgagtattccagg 34333415 Query: 419 gacgccgtggcgtgc 433 ||||| || |||||| Sbjct: 34333416 gacgctgtcgcgtgc 34333430
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Plus Query: 122 cgccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttc 181 ||||| |||||||| || ||||| ||| | ||||||||||||||||||| |||||| || Sbjct: 34423588 cgccggcgccacgtcctcctgttcccgctcccgtaccagggccacatcaaccccatgctc 34423647 Query: 182 cggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacacccacttc 241 ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 34423648 cggctcgccggcgtcctccgcgcccgcggcttcgccgtcaccgtcttccacacccacttc 34423707 Query: 242 aacgccccggacccctcgcgccacccggagtaccgcttcgtccccgtccccgacggcatg 301 |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 34423708 aacgccccggacgccgcgcgccacccggagcaccgcttcgtcgccgtccccgacggcatg 34423767 Query: 302 tccg---gcccagcacccgtcgctatcgaggacgtcgtcgcccacatcctcgcgctcaac 358 |||| |||| | |||||| | ||| ||||||||| ||||||| |||||||||| Sbjct: 34423768 tccggccgcccgccgcccgtctccgtcggcgacgtcgtcaagcacatccgcgcgctcaac 34423827 Query: 359 gccgcgtgcgaggcgcccttccgtgaccgcctagccgccgtcctggaagagtactccagg 418 |||||||||||||| | ||||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 34423828 gccgcgtgcgaggccgcgttccgggaccgcctcgccgccgtcctggccgagtattccagg 34423887 Query: 419 gacgccgtggcgtgc 433 ||||| || |||||| Sbjct: 34423888 gacgctgtcgcgtgc 34423902
>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete sequence Length = 143205 Score = 287 bits (145), Expect = 2e-74 Identities = 273/315 (86%), Gaps = 3/315 (0%) Strand = Plus / Minus Query: 122 cgccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttc 181 ||||| |||||||| || ||||| ||| | ||||||||||||||||||| |||||| || Sbjct: 1882 cgccggcgccacgtcctcctgttcccgctcccgtaccagggccacatcaaccccatgctc 1823 Query: 182 cggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacacccacttc 241 ||||| |||||| |||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct: 1822 cggctcgccggcgtcctccgcgcccgcggcttcgccgtcaccgtcttccacacccacttc 1763 Query: 242 aacgccccggacccctcgcgccacccggagtaccgcttcgtccccgtccccgacggcatg 301 |||||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| Sbjct: 1762 aacgccccggacgccgcgcgccacccggagcaccgcttcgtcgccgtccccgacggcatg 1703 Query: 302 tccg---gcccagcacccgtcgctatcgaggacgtcgtcgcccacatcctcgcgctcaac 358 |||| |||| | |||||| | ||| ||||||||| ||||||| |||||||||| Sbjct: 1702 tccggccgcccgccgcccgtctccgtcggcgacgtcgtcaagcacatccgcgcgctcaac 1643 Query: 359 gccgcgtgcgaggcgcccttccgtgaccgcctagccgccgtcctggaagagtactccagg 418 |||||||||||||| | ||||| |||||||| ||||||||||||| ||||| |||||| Sbjct: 1642 gccgcgtgcgaggccgcgttccgggaccgcctcgccgccgtcctggccgagtattccagg 1583 Query: 419 gacgccgtggcgtgc 433 ||||| || |||||| Sbjct: 1582 gacgctgtcgcgtgc 1568
>ref|NM_186788.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1440 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 157 ccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggcttcgc 216 ||||||||||||||| |||||||||| || ||| || |||||||||| || |||||||| Sbjct: 84 ccagggccacatcaaccccatgttccacctcgccagcgtcctccacgcgcggggcttcgc 143 Query: 217 cgtcaccgtcttccac 232 ||||||||||||||| Sbjct: 144 ggtcaccgtcttccac 159
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 157 ccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggcttcgc 216 ||||||||||||||| |||||||||| || ||| || |||||||||| || |||||||| Sbjct: 7871003 ccagggccacatcaaccccatgttccacctcgccagcgtcctccacgcgcggggcttcgc 7871062 Query: 217 cgtcaccgtcttccac 232 ||||||||||||||| Sbjct: 7871063 ggtcaccgtcttccac 7871078 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 195 tcctccacgcccgtggcttcgccgtcaccgtcttccacacccacttcaacgccccggacc 254 |||||| || ||| ||| |||||||||||||| ||| |||| |||||||||||| ||| Sbjct: 8002477 tcctccgcggccgcggcctcgccgtcaccgtcgtccgcaccaccttcaacgcccccgacg 8002418 Query: 255 cctcgcgccacccggag 271 || |||||||||||||| Sbjct: 8002417 ccgcgcgccacccggag 8002401 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 217 cgtcaccgtcttccacacccacttcaacgccccggacccctcgcgccacccggag 271 ||||||||| ||||||||| ||||||||| | ||||| ||||||||||||||| Sbjct: 7936086 cgtcaccgtgctccacacccgcttcaacgcgctcgacccgtcgcgccacccggag 7936140 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 345 tcctcgcgctcaacgccgcgtgcgaggcgcccttccg 381 ||||||||||||||||||| |||||||| || ||||| Sbjct: 7944460 tcctcgcgctcaacgccgcctgcgaggccccgttccg 7944496 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||||| ||||||||||| ||||| Sbjct: 8002322 gcgctcaacgccgcctgcgaggcgccgttccg 8002291 Score = 44.1 bits (22), Expect = 0.40 Identities = 46/54 (85%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgccccggacccctcgcgccacc 266 |||||||||||||| ||||||| | || |||||| || ||||| ||||||||| Sbjct: 7944316 tcgccgtcaccgtcctccacacgcgctccaacgcgcccgacccggcgcgccacc 7944369 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgc 246 |||||||||||||||||||| ||| | ||||||| Sbjct: 7848054 tcgccgtcaccgtcttccacgcccccgtcaacgc 7848087
>dbj|AP004340.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0523A04 Length = 149049 Score = 79.8 bits (40), Expect = 7e-12 Identities = 67/76 (88%) Strand = Plus / Plus Query: 157 ccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggcttcgc 216 ||||||||||||||| |||||||||| || ||| || |||||||||| || |||||||| Sbjct: 120001 ccagggccacatcaaccccatgttccacctcgccagcgtcctccacgcgcggggcttcgc 120060 Query: 217 cgtcaccgtcttccac 232 ||||||||||||||| Sbjct: 120061 ggtcaccgtcttccac 120076 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgc 246 |||||||||||||||||||| ||| | ||||||| Sbjct: 97052 tcgccgtcaccgtcttccacgcccccgtcaacgc 97085
>gb|AF331854.1|AF331854 Zea mays cultivar B 73 UDP-glucosyltransferase BX8 (Bx8) gene, complete cds Length = 6322 Score = 65.9 bits (33), Expect = 1e-07 Identities = 39/41 (95%) Strand = Plus / Plus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccgtgaccgcct 390 |||||||||||||| ||||||||||||||||| |||||||| Sbjct: 3292 gcgctcaacgccgcctgcgaggcgcccttccgggaccgcct 3332
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 195 tcctccacgcccgtggcttcgccgtcaccgtcttccacacccacttcaacgccccggacc 254 |||||| || ||| ||| |||||||||||||| ||| |||| |||||||||||| ||| Sbjct: 40674 tcctccgcggccgcggcctcgccgtcaccgtcgtccgcaccaccttcaacgcccccgacg 40615 Query: 255 cctcgcgccacccggag 271 || |||||||||||||| Sbjct: 40614 ccgcgcgccacccggag 40598 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||||| ||||||||||| ||||| Sbjct: 40519 gcgctcaacgccgcctgcgaggcgccgttccg 40488
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0418E08 Length = 141040 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 195 tcctccacgcccgtggcttcgccgtcaccgtcttccacacccacttcaacgccccggacc 254 |||||| || ||| ||| |||||||||||||| ||| |||| |||||||||||| ||| Sbjct: 118836 tcctccgcggccgcggcctcgccgtcaccgtcgtccgcaccaccttcaacgcccccgacg 118777 Query: 255 cctcgcgccacccggag 271 || |||||||||||||| Sbjct: 118776 ccgcgcgccacccggag 118760 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 217 cgtcaccgtcttccacacccacttcaacgccccggacccctcgcgccacccggag 271 ||||||||| ||||||||| ||||||||| | ||||| ||||||||||||||| Sbjct: 52445 cgtcaccgtgctccacacccgcttcaacgcgctcgacccgtcgcgccacccggag 52499 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 345 tcctcgcgctcaacgccgcgtgcgaggcgcccttccg 381 ||||||||||||||||||| |||||||| || ||||| Sbjct: 60819 tcctcgcgctcaacgccgcctgcgaggccccgttccg 60855 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||||| ||||||||||| ||||| Sbjct: 118681 gcgctcaacgccgcctgcgaggcgccgttccg 118650 Score = 44.1 bits (22), Expect = 0.40 Identities = 46/54 (85%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgccccggacccctcgcgccacc 266 |||||||||||||| ||||||| | || |||||| || ||||| ||||||||| Sbjct: 60675 tcgccgtcaccgtcctccacacgcgctccaacgcgcccgacccggcgcgccacc 60728
>gb|AC146523.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence Length = 148306 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 123 gccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttcc 182 |||| |||| |||||||||| | ||| || | ||||| ||||||||||| |||||| ||| Sbjct: 71122 gccgccgccgcgtgctgctgctcccgctgccataccacggccacatcaaccccatgctcc 71063 Query: 183 ggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacac 234 | || |||| | || |||| ||| ||| |||||||||||||| ||||||| Sbjct: 71062 gcctcgccgccgcgctgcacgaccgcggcctcgccgtcaccgtcgtccacac 71011
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 123 gccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttcc 182 |||| |||| |||||||||| | ||| || | ||||| ||||||||||| |||||| ||| Sbjct: 13938285 gccgccgccgcgtgctgctgctcccgctgccataccacggccacatcaaccccatgctcc 13938226 Query: 183 ggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacac 234 | || |||| | || |||| ||| ||| |||||||||||||| ||||||| Sbjct: 13938225 gcctcgccgccgcgctgcacgaccgcggcctcgccgtcaccgtcgtccacac 13938174 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Minus Query: 153 cgtaccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggct 212 |||||| |||||||| || |||||||||| || |||| | | |||| | ||||||||| Sbjct: 14097339 cgtacccgggccacaccatccccatgttccacctcgccgccgtgctccgctcccgtggct 14097280 Query: 213 tcgccgtcaccgtcttccacacc 235 || || |||||||| |||||||| Sbjct: 14097279 tctccatcaccgtcctccacacc 14097257
>dbj|AK069996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040B08, full insert sequence Length = 1502 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Plus Query: 123 gccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttcc 182 |||| |||| |||||||||| | ||| || | ||||| ||||||||||| |||||| ||| Sbjct: 47 gccgccgccgcgtgctgctgctcccgctgccataccacggccacatcaaccccatgctcc 106 Query: 183 ggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacac 234 | || |||| | || |||| ||| ||| |||||||||||||| ||||||| Sbjct: 107 gcctcgccgccgcgctgcacgaccgcggcctcgccgtcaccgtcgtccacac 158
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 91/112 (81%) Strand = Plus / Minus Query: 123 gccgtcgccacgtgctgctgtttccgttggcgtaccagggccacatcaatcccatgttcc 182 |||| |||| |||||||||| | ||| || | ||||| ||||||||||| |||||| ||| Sbjct: 14020287 gccgccgccgcgtgctgctgctcccgctgccataccacggccacatcaaccccatgctcc 14020228 Query: 183 ggctggccggcatcctccacgcccgtggcttcgccgtcaccgtcttccacac 234 | || |||| | || |||| ||| ||| |||||||||||||| ||||||| Sbjct: 14020227 gcctcgccgccgcgctgcacgaccgcggcctcgccgtcaccgtcgtccacac 14020176 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Minus Query: 153 cgtaccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggct 212 |||||| |||||||| || |||||||||| || |||| | | |||| | ||||||||| Sbjct: 14179341 cgtacccgggccacaccatccccatgttccacctcgccgccgtgctccgctcccgtggct 14179282 Query: 213 tcgccgtcaccgtcttccacacc 235 || || |||||||| |||||||| Sbjct: 14179281 tctccatcaccgtcctccacacc 14179259
>ref|XM_477223.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1648 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 345 tcctcgcgctcaacgccgcgtgcgaggcgcccttccg 381 ||||||||||||||||||| |||||||| || ||||| Sbjct: 351 tcctcgcgctcaacgccgcctgcgaggccccgttccg 387 Score = 44.1 bits (22), Expect = 0.40 Identities = 46/54 (85%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgccccggacccctcgcgccacc 266 |||||||||||||| ||||||| | || |||||| || ||||| ||||||||| Sbjct: 207 tcgccgtcaccgtcctccacacgcgctccaacgcgcccgacccggcgcgccacc 260
>ref|NM_188519.1| Oryza sativa (japonica cultivar-group), Ozsa8188 predicted mRNA Length = 903 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||||| ||||||||||| ||||| Sbjct: 495 gcgctcaacgccgcctgcgaggcgccgttccg 526
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||||| ||||||||||| ||||| Sbjct: 6721747 gcgctcaacgccgcctgcgaggcgccgttccg 6721778
>dbj|AP001800.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E05 Length = 176935 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||||| ||||||||||| ||||| Sbjct: 73899 gcgctcaacgccgcctgcgaggcgccgttccg 73930
>dbj|AP002835.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0417G05 Length = 147803 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||||| ||||||||||| ||||| Sbjct: 3808 gcgctcaacgccgcctgcgaggcgccgttccg 3839
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccgtga 384 |||||||||||||| ||| ||||||| |||||||| Sbjct: 101696 gcgctcaacgccgcttgcaaggcgccgttccgtga 101730
>gb|AC145367.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence Length = 111122 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Minus Query: 153 cgtaccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggct 212 |||||| |||||||| || |||||||||| || |||| | | |||| | ||||||||| Sbjct: 85747 cgtacccgggccacaccatccccatgttccacctcgccgccgtgctccgctcccgtggct 85688 Query: 213 tcgccgtcaccgtcttccacacc 235 || || |||||||| |||||||| Sbjct: 85687 tctccatcaccgtcctccacacc 85665
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 46.1 bits (23), Expect = 0.10 Identities = 32/35 (91%) Strand = Plus / Plus Query: 350 gcgctcaacgccgcgtgcgaggcgcccttccgtga 384 |||||||||||||| ||| ||||||| |||||||| Sbjct: 8769254 gcgctcaacgccgcttgcaaggcgccgttccgtga 8769288 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 cgcttcgtccccgtccccgacggc 298 ||||||| |||||||||||||||| Sbjct: 16081179 cgcttcgcccccgtccccgacggc 16081156
>dbj|AK105931.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-B02, full insert sequence Length = 1509 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Plus Query: 153 cgtaccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggct 212 |||||| |||||||| || |||||||||| || |||| | | |||| | ||||||||| Sbjct: 45 cgtacccgggccacaccatccccatgttccacctcgccgccgtgctccgctcccgtggct 104 Query: 213 tcgccgtcaccgtcttccacacc 235 || || |||||||| |||||||| Sbjct: 105 tctccatcaccgtcctccacacc 127
>dbj|AK099588.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043F17, full insert sequence Length = 1534 Score = 46.1 bits (23), Expect = 0.10 Identities = 68/83 (81%) Strand = Plus / Plus Query: 153 cgtaccagggccacatcaatcccatgttccggctggccggcatcctccacgcccgtggct 212 |||||| |||||||| || |||||||||| || |||| | | |||| | ||||||||| Sbjct: 59 cgtacccgggccacaccatccccatgttccacctcgccgccgtgctccgctcccgtggct 118 Query: 213 tcgccgtcaccgtcttccacacc 235 || || |||||||| |||||||| Sbjct: 119 tctccatcaccgtcctccacacc 141
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 342 acatcctcgcgctcaacgccgcg 364 ||||||||||||||||||||||| Sbjct: 3568855 acatcctcgcgctcaacgccgcg 3568833 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 342 acatcctcgcgctcaacgccgc 363 |||||||||||||||||||||| Sbjct: 654080 acatcctcgcgctcaacgccgc 654101
>ref|XM_477221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1785 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgc 246 |||||||||||||||||||| ||| | ||||||| Sbjct: 457 tcgccgtcaccgtcttccacgcccccgtcaacgc 490
>gb|AE012036.1| Xanthomonas axonopodis pv. citri str. 306, section 414 of 469 of the complete genome Length = 10029 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Minus Query: 61 gacatcatcgccgtaccggccggcgccaaccatg 94 ||||||| || |||||||||| |||||||||||| Sbjct: 6918 gacatcaacggcgtaccggccagcgccaaccatg 6885
>dbj|AK107471.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B04, full insert sequence Length = 1785 Score = 44.1 bits (22), Expect = 0.40 Identities = 31/34 (91%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgc 246 |||||||||||||||||||| ||| | ||||||| Sbjct: 457 tcgccgtcaccgtcttccacgcccccgtcaacgc 490
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 342 acatcctcgcgctcaacgccgc 363 |||||||||||||||||||||| Sbjct: 332052 acatcctcgcgctcaacgccgc 332031
>dbj|AK064151.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-E05, full insert sequence Length = 1648 Score = 44.1 bits (22), Expect = 0.40 Identities = 46/54 (85%) Strand = Plus / Plus Query: 213 tcgccgtcaccgtcttccacacccacttcaacgccccggacccctcgcgccacc 266 |||||||||||||| ||||||| | || |||||| || ||||| ||||||||| Sbjct: 207 tcgccgtcaccgtcctccacacgcgctccaacgcgcccgacccggcgcgccacc 260 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 345 tcctcgcgctcaacgccgcgtgcgaggcgcccttccg 381 |||||||||||| |||||| |||||||| || ||||| Sbjct: 351 tcctcgcgctcaccgccgcctgcgaggccccgttccg 387
>gb|AC163661.4| Mus musculus BAC clone RP23-288B18 from chromosome 10, complete sequence Length = 210846 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 83 gcgccaaccatggcgttggggggca 107 |||||| |||||||||||||||||| Sbjct: 21307 gcgccacccatggcgttggggggca 21331
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 247 cccggacccctcgcgccaccc 267 ||||||||||||||||||||| Sbjct: 303512 cccggacccctcgcgccaccc 303492
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 424 cgtggcgtgcatcatcgtcga 444 ||||||||||||||||||||| Sbjct: 5575451 cgtggcgtgcatcatcgtcga 5575471
>ref|XM_370385.1| Magnaporthe grisea 70-15 chromosome II hypothetical protein (MG06882.4) partial mRNA Length = 2574 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 gacgtcgtcgcccacatcctc 349 ||||||||||||||||||||| Sbjct: 1131 gacgtcgtcgcccacatcctc 1111
>ref|XM_572691.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNI01230) partial mRNA Length = 3042 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 cccggacccctcgcgccaccc 267 ||||||||||||||||||||| Sbjct: 49 cccggacccctcgcgccaccc 69
>gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154016 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 gcgccaaccatggcgttggggggca 107 |||||| |||||||||||||||||| Sbjct: 16206 gcgccacccatggcgttggggggca 16182
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 315 ccgtcgctatcgaggacgtcgtcgc 339 ||||||| ||||||||||||||||| Sbjct: 668676 ccgtcgcgatcgaggacgtcgtcgc 668700
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 agcgcggtcgccggtcgccgtcgcc 131 |||||| |||||||||||||||||| Sbjct: 17980822 agcgcgctcgccggtcgccgtcgcc 17980846
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 107 agcgcggtcgccggtcgccgtcgcc 131 |||||| |||||||||||||||||| Sbjct: 17907143 agcgcgctcgccggtcgccgtcgcc 17907167
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124294 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 agcgcggtcgccggtcgccgtcgcc 131 |||||| |||||||||||||||||| Sbjct: 104870 agcgcgctcgccggtcgccgtcgcc 104846
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 107 agcgcggtcgccggtcgccgtcgcc 131 |||||| |||||||||||||||||| Sbjct: 17734 agcgcgctcgccggtcgccgtcgcc 17710
>gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosome 10, complete sequence Length = 200663 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 83 gcgccaaccatggcgttggggggca 107 |||||| |||||||||||||||||| Sbjct: 42431 gcgccacccatggcgttggggggca 42407
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 cgcttcgtccccgtccccgacggc 298 ||||||| |||||||||||||||| Sbjct: 32349 cgcttcgcccccgtccccgacggc 32326
>gb|AC135424.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015F11, complete sequence Length = 177574 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 cgcttcgtccccgtccccgacggc 298 ||||||| |||||||||||||||| Sbjct: 166928 cgcttcgcccccgtccccgacggc 166905
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gtggcgtgcatcatcgtcga 444 |||||||||||||||||||| Sbjct: 5440852 gtggcgtgcatcatcgtcga 5440871
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 gtggcgtgcatcatcgtcga 444 |||||||||||||||||||| Sbjct: 5008461 gtggcgtgcatcatcgtcga 5008480
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 342 acatcctcgcgctcaacgccgcgtgcgaggcg 373 |||||||||||||||| |||||| ||||||| Sbjct: 398351 acatcctcgcgctcaatgccgcggtcgaggcg 398320
>emb|BX294144.1| Pirellula sp. strain 1 complete genome; segment 12/24 Length = 304850 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cacccacttcaacgccccgg 251 |||||||||||||||||||| Sbjct: 234726 cacccacttcaacgccccgg 234745
>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29 Length = 308050 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 tcgaggacgtcgtcgcccac 343 |||||||||||||||||||| Sbjct: 260446 tcgaggacgtcgtcgcccac 260427
>emb|X51967.1|DMRER2DM Drosophila melanogaster DNA for type II retrotransposable element R2Dm Length = 3607 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gcttcgccgtcaccgtcttc 229 |||||||||||||||||||| Sbjct: 1411 gcttcgccgtcaccgtcttc 1392
>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome Length = 195859 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 acgccccggacccctcgcgc 262 |||||||||||||||||||| Sbjct: 79859 acgccccggacccctcgcgc 79878
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gtcgccggtcgccgtcgcca 132 |||||||||||||||||||| Sbjct: 952255 gtcgccggtcgccgtcgcca 952236
>dbj|AP004562.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0470F10 Length = 185294 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 gtcgccggtcgccgtcgcca 132 |||||||||||||||||||| Sbjct: 114993 gtcgccggtcgccgtcgcca 114974
>gb|AC151311.2| Xenopus tropicalis clone ISB-158O8, complete sequence Length = 87840 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 159 agggccacatcaatcccatg 178 |||||||||||||||||||| Sbjct: 38995 agggccacatcaatcccatg 38976
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 acatcctcgcgctcaacgcc 361 |||||||||||||||||||| Sbjct: 1513312 acatcctcgcgctcaacgcc 1513293
>gb|CP000225.1| Drosophila melanogaster genomic scaffold 211000022280724 Length = 820587 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 ccacacccacttcaacgccc 248 |||||||||||||||||||| Sbjct: 731547 ccacacccacttcaacgccc 731566
>gb|CP000170.1| Drosophila melanogaster genomic scaffold 211000022279294 Length = 79135 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 gcttcgccgtcaccgtcttc 229 |||||||||||||||||||| Sbjct: 75344 gcttcgccgtcaccgtcttc 75325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,550,708 Number of Sequences: 3902068 Number of extensions: 2550708 Number of successful extensions: 49247 Number of sequences better than 10.0: 57 Number of HSP's better than 10.0 without gapping: 58 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48229 Number of HSP's gapped (non-prelim): 1014 length of query: 466 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 444 effective length of database: 17,147,199,772 effective search space: 7613356698768 effective search space used: 7613356698768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
