| Clone Name | baet32b04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete sequence Length = 112892 Score = 115 bits (58), Expect = 1e-22 Identities = 174/213 (81%), Gaps = 16/213 (7%) Strand = Plus / Plus Query: 27 agcatgcgcccgtacatccccaaggcaaccttcgccttc----tgccactcgctcctctc 82 |||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||| Sbjct: 24849 agcatgcgtccgtacatccccaagcaaaccttcgccttccttctgccactccctcctctc 24908 Query: 83 ctcccgcgtccggccatccgccgc---------ctccccggcggcgccgctgctccccgt 133 ||| ||| ||| || |||||||| |||||| |||||||| || ||||| Sbjct: 24909 ctcgcgcctcctcccgtccgccgccgccgcctcctcccccacggcgccgaccctgcccgt 24968 Query: 134 gcaggccctcctcaccacctccggcctct---ccccgcgccacccggagctctccctcgt 190 |||||| |||||||||||| |||||||| ||||||||||||| || ||||||||||| Sbjct: 24969 gcaggcgctcctcaccaccgccggcctcctgcccccgcgccaccccgacctctccctcgt 25028 Query: 191 cgcgctcaactccctcctccgcgtcctcgcccg 223 |||||||||||| |||||||||||||| |||| Sbjct: 25029 cgcgctcaactcgttcctccgcgtcctctcccg 25061 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||| Sbjct: 25211 agctccacgcgctcctcgtgaagaacggcctcttcccctccgaccactacgtcgccaccg 25270 Query: 442 cgctgct 448 ||||||| Sbjct: 25271 cgctgct 25277
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 115 bits (58), Expect = 1e-22 Identities = 174/213 (81%), Gaps = 16/213 (7%) Strand = Plus / Minus Query: 27 agcatgcgcccgtacatccccaaggcaaccttcgccttc----tgccactcgctcctctc 82 |||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||| Sbjct: 29824612 agcatgcgtccgtacatccccaagcaaaccttcgccttccttctgccactccctcctctc 29824553 Query: 83 ctcccgcgtccggccatccgccgc---------ctccccggcggcgccgctgctccccgt 133 ||| ||| ||| || |||||||| |||||| |||||||| || ||||| Sbjct: 29824552 ctcgcgcctcctcccgtccgccgccgccgcctcctcccccacggcgccgaccctgcccgt 29824493 Query: 134 gcaggccctcctcaccacctccggcctct---ccccgcgccacccggagctctccctcgt 190 |||||| |||||||||||| |||||||| ||||||||||||| || ||||||||||| Sbjct: 29824492 gcaggcgctcctcaccaccgccggcctcctgcccccgcgccaccccgacctctccctcgt 29824433 Query: 191 cgcgctcaactccctcctccgcgtcctcgcccg 223 |||||||||||| |||||||||||||| |||| Sbjct: 29824432 cgcgctcaactcgttcctccgcgtcctctcccg 29824400 Score = 103 bits (52), Expect = 5e-19 Identities = 106/124 (85%) Strand = Plus / Plus Query: 100 ccgccgcctccccggcggcgccgctgctccccgtgcaggccctcctcaccacctccggcc 159 |||||||| |||| |||||||| || ||||||||||| || ||||||||| |||||| Sbjct: 3138589 ccgccgccgcccccacggcgccggccctacccgtgcaggcgctactcaccaccgccggcc 3138648 Query: 160 tctccccgcgccacccggagctctccctcgtcgcgctcaactccctcctccgcgtcctcg 219 || ||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 3138649 tcctgccgcgccaccccgacctctccctggtcgcgctcaactcgctcctccgcgtcctct 3138708 Query: 220 cccg 223 |||| Sbjct: 3138709 cccg 3138712 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||| Sbjct: 29824250 agctccacgcgctcctcgtgaagaacggcctcttcccctccgaccactacgtcgccaccg 29824191 Query: 442 cgctgct 448 ||||||| Sbjct: 29824190 cgctgct 29824184 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||| | || ||||||||||||||||||||||||||||| Sbjct: 3138862 agctccacgcgctcctcgtgaagaatggccacttcccctccgaccactacgtcaccaccg 3138921 Query: 442 cgctgct 448 ||||||| Sbjct: 3138922 cgctgct 3138928 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 129 cccgtgcaggccctcctcaccacctccggcctctccccgcgccacccggagctctccctc 188 ||||||||||| || ||||||||| | |||||| |||| |||||| || |||||||| Sbjct: 3140680 cccgtgcaggcgctactcaccaccgctggcctcctgccgcaccaccccgacctctccctg 3140621 Query: 189 gtcgcgctcaactccctcctccgcgtcctcgcccg 223 |||||||||||||| ||||||||||||||| |||| Sbjct: 3140620 gtcgcgctcaactcgctcctccgcgtcctctcccg 3140586 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 27 agcatgcgcccgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 |||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct: 3138510 agcatgcgtccgtacatccccaagcaaaccttcgctttctgccactccctcctctcctc 3138568 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 37 cgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 |||||||||||||| |||||||||||||||||| || ||||||||||| Sbjct: 3140781 cgtacatccccaagcaaaccttcgccttctgccaatccctcctctcctc 3140733
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 115 bits (58), Expect = 1e-22 Identities = 174/213 (81%), Gaps = 16/213 (7%) Strand = Plus / Minus Query: 27 agcatgcgcccgtacatccccaaggcaaccttcgccttc----tgccactcgctcctctc 82 |||||||| ||||||||||||||| ||||||||||||| |||||||| |||||||| Sbjct: 29916034 agcatgcgtccgtacatccccaagcaaaccttcgccttccttctgccactccctcctctc 29915975 Query: 83 ctcccgcgtccggccatccgccgc---------ctccccggcggcgccgctgctccccgt 133 ||| ||| ||| || |||||||| |||||| |||||||| || ||||| Sbjct: 29915974 ctcgcgcctcctcccgtccgccgccgccgcctcctcccccacggcgccgaccctgcccgt 29915915 Query: 134 gcaggccctcctcaccacctccggcctct---ccccgcgccacccggagctctccctcgt 190 |||||| |||||||||||| |||||||| ||||||||||||| || ||||||||||| Sbjct: 29915914 gcaggcgctcctcaccaccgccggcctcctgcccccgcgccaccccgacctctccctcgt 29915855 Query: 191 cgcgctcaactccctcctccgcgtcctcgcccg 223 |||||||||||| |||||||||||||| |||| Sbjct: 29915854 cgcgctcaactcgttcctccgcgtcctctcccg 29915822 Score = 103 bits (52), Expect = 5e-19 Identities = 106/124 (85%) Strand = Plus / Plus Query: 100 ccgccgcctccccggcggcgccgctgctccccgtgcaggccctcctcaccacctccggcc 159 |||||||| |||| |||||||| || ||||||||||| || ||||||||| |||||| Sbjct: 3138700 ccgccgccgcccccacggcgccggccctacccgtgcaggcgctactcaccaccgccggcc 3138759 Query: 160 tctccccgcgccacccggagctctccctcgtcgcgctcaactccctcctccgcgtcctcg 219 || ||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 3138760 tcctgccgcgccaccccgacctctccctggtcgcgctcaactcgctcctccgcgtcctct 3138819 Query: 220 cccg 223 |||| Sbjct: 3138820 cccg 3138823 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Minus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||| Sbjct: 29915672 agctccacgcgctcctcgtgaagaacggcctcttcccctccgaccactacgtcgccaccg 29915613 Query: 442 cgctgct 448 ||||||| Sbjct: 29915612 cgctgct 29915606 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||| | || ||||||||||||||||||||||||||||| Sbjct: 3138973 agctccacgcgctcctcgtgaagaatggccacttcccctccgaccactacgtcaccaccg 3139032 Query: 442 cgctgct 448 ||||||| Sbjct: 3139033 cgctgct 3139039 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 129 cccgtgcaggccctcctcaccacctccggcctctccccgcgccacccggagctctccctc 188 ||||||||||| || ||||||||| | |||||| |||| |||||| || |||||||| Sbjct: 3140791 cccgtgcaggcgctactcaccaccgctggcctcctgccgcaccaccccgacctctccctg 3140732 Query: 189 gtcgcgctcaactccctcctccgcgtcctcgcccg 223 |||||||||||||| ||||||||||||||| |||| Sbjct: 3140731 gtcgcgctcaactcgctcctccgcgtcctctcccg 3140697 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 27 agcatgcgcccgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 |||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct: 3138621 agcatgcgtccgtacatccccaagcaaaccttcgctttctgccactccctcctctcctc 3138679 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 37 cgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 |||||||||||||| |||||||||||||||||| || ||||||||||| Sbjct: 3140892 cgtacatccccaagcaaaccttcgccttctgccaatccctcctctcctc 3140844
>ref|XM_470263.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 103 bits (52), Expect = 5e-19 Identities = 106/124 (85%) Strand = Plus / Plus Query: 100 ccgccgcctccccggcggcgccgctgctccccgtgcaggccctcctcaccacctccggcc 159 |||||||| |||| |||||||| || ||||||||||| || ||||||||| |||||| Sbjct: 77 ccgccgccgcccccacggcgccggccctacccgtgcaggcgctactcaccaccgccggcc 136 Query: 160 tctccccgcgccacccggagctctccctcgtcgcgctcaactccctcctccgcgtcctcg 219 || ||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 137 tcctgccgcgccaccccgacctctccctggtcgcgctcaactcgctcctccgcgtcctct 196 Query: 220 cccg 223 |||| Sbjct: 197 cccg 200 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||| | || ||||||||||||||||||||||||||||| Sbjct: 350 agctccacgcgctcctcgtgaagaatggccacttcccctccgaccactacgtcaccaccg 409 Query: 442 cgctgct 448 ||||||| Sbjct: 410 cgctgct 416 Score = 71.9 bits (36), Expect = 2e-09 Identities = 51/56 (91%) Strand = Plus / Plus Query: 30 atgcgcccgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 ||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct: 1 atgcgtccgtacatccccaagcaaaccttcgctttctgccactccctcctctcctc 56
>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05, complete sequence Length = 101799 Score = 103 bits (52), Expect = 5e-19 Identities = 106/124 (85%) Strand = Plus / Plus Query: 100 ccgccgcctccccggcggcgccgctgctccccgtgcaggccctcctcaccacctccggcc 159 |||||||| |||| |||||||| || ||||||||||| || ||||||||| |||||| Sbjct: 61602 ccgccgccgcccccacggcgccggccctacccgtgcaggcgctactcaccaccgccggcc 61661 Query: 160 tctccccgcgccacccggagctctccctcgtcgcgctcaactccctcctccgcgtcctcg 219 || ||||||||||| || |||||||| |||||||||||||| ||||||||||||||| Sbjct: 61662 tcctgccgcgccaccccgacctctccctggtcgcgctcaactcgctcctccgcgtcctct 61721 Query: 220 cccg 223 |||| Sbjct: 61722 cccg 61725 Score = 93.7 bits (47), Expect = 5e-16 Identities = 62/67 (92%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||| | || ||||||||||||||||||||||||||||| Sbjct: 61875 agctccacgcgctcctcgtgaagaatggccacttcccctccgaccactacgtcaccaccg 61934 Query: 442 cgctgct 448 ||||||| Sbjct: 61935 cgctgct 61941 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 129 cccgtgcaggccctcctcaccacctccggcctctccccgcgccacccggagctctccctc 188 ||||||||||| || ||||||||| | |||||| |||| |||||| || |||||||| Sbjct: 63693 cccgtgcaggcgctactcaccaccgctggcctcctgccgcaccaccccgacctctccctg 63634 Query: 189 gtcgcgctcaactccctcctccgcgtcctcgcccg 223 |||||||||||||| ||||||||||||||| |||| Sbjct: 63633 gtcgcgctcaactcgctcctccgcgtcctctcccg 63599 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Plus Query: 27 agcatgcgcccgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 |||||||| ||||||||||||||| ||||||||| ||||||||||| ||||||||||| Sbjct: 61523 agcatgcgtccgtacatccccaagcaaaccttcgctttctgccactccctcctctcctc 61581 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 37 cgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 |||||||||||||| |||||||||||||||||| || ||||||||||| Sbjct: 63794 cgtacatccccaagcaaaccttcgccttctgccaatccctcctctcctc 63746
>dbj|AK063345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B07, full insert sequence Length = 1586 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaagaacgccctcttcccctccgaccactacgtcaccaccg 441 ||||||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||| Sbjct: 187 agctccacgcgctcctcgtgaagaacggcctcttcccctccgaccactacgtcgccaccg 246 Query: 442 cgctgct 448 ||||||| Sbjct: 247 cgctgct 253
>ref|XM_470264.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 837 Score = 85.7 bits (43), Expect = 1e-13 Identities = 82/95 (86%) Strand = Plus / Plus Query: 129 cccgtgcaggccctcctcaccacctccggcctctccccgcgccacccggagctctccctc 188 ||||||||||| || ||||||||| | |||||| |||| |||||| || |||||||| Sbjct: 532 cccgtgcaggcgctactcaccaccgctggcctcctgccgcaccaccccgacctctccctg 591 Query: 189 gtcgcgctcaactccctcctccgcgtcctcgcccg 223 |||||||||||||| ||||||||||||||| |||| Sbjct: 592 gtcgcgctcaactcgctcctccgcgtcctctcccg 626 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Plus Query: 37 cgtacatccccaaggcaaccttcgccttctgccactcgctcctctcctc 85 |||||||||||||| |||||||||||||||||| || ||||||||||| Sbjct: 431 cgtacatccccaagcaaaccttcgccttctgccaatccctcctctcctc 479
>ref|XM_482246.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2871 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 385 tccacgcgctcctcctcaagaac 407 ||||||||||||||||||||||| Sbjct: 41 tccacgcgctcctcctcaagaac 63
>ref|NM_191755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 190 tcgcgctcaactccctcctccgcgtcctcgc 220 |||||| ||||||||||||||||| |||||| Sbjct: 221 tcgcgcacaactccctcctccgcgccctcgc 251
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 385 tccacgcgctcctcctcaagaac 407 ||||||||||||||||||||||| Sbjct: 18993856 tccacgcgctcctcctcaagaac 18993878 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tccgccgcctccccggcggc 118 |||||||||||||||||||| Sbjct: 3974214 tccgccgcctccccggcggc 3974233
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 382 agctccacgcgctcctcctcaag 404 ||||||||||||||||||||||| Sbjct: 6808908 agctccacgcgctcctcctcaag 6808886
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 190 tcgcgctcaactccctcctccgcgtcctcgc 220 |||||| ||||||||||||||||| |||||| Sbjct: 29774772 tcgcgcacaactccctcctccgcgccctcgc 29774802 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tccctcctccgcgtcctcgc 220 |||||||||||||||||||| Sbjct: 37053327 tccctcctccgcgtcctcgc 37053308
>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683B11 Length = 155955 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 190 tcgcgctcaactccctcctccgcgtcctcgc 220 |||||| ||||||||||||||||| |||||| Sbjct: 18867 tcgcgcacaactccctcctccgcgccctcgc 18897
>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1131B07 Length = 109135 Score = 46.1 bits (23), Expect = 0.098 Identities = 29/31 (93%) Strand = Plus / Plus Query: 190 tcgcgctcaactccctcctccgcgtcctcgc 220 |||||| ||||||||||||||||| |||||| Sbjct: 104503 tcgcgcacaactccctcctccgcgccctcgc 104533
>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1198_B10 Length = 119768 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 385 tccacgcgctcctcctcaagaac 407 ||||||||||||||||||||||| Sbjct: 78776 tccacgcgctcctcctcaagaac 78798
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Minus Query: 382 agctccacgcgctcctcctcaag 404 ||||||||||||||||||||||| Sbjct: 138587 agctccacgcgctcctcctcaag 138565
>dbj|AK120621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013152E17, full insert sequence Length = 1872 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaag 404 ||||||||||||||||||||||| Sbjct: 379 agctccacgcgctcctcctcaag 401
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 385 tccacgcgctcctcctcaagaac 407 ||||||||||||||||||||||| Sbjct: 18643 tccacgcgctcctcctcaagaac 18665
>dbj|AK072084.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116A15, full insert sequence Length = 1872 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 382 agctccacgcgctcctcctcaag 404 ||||||||||||||||||||||| Sbjct: 379 agctccacgcgctcctcctcaag 401
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 46.1 bits (23), Expect = 0.098 Identities = 26/27 (96%) Strand = Plus / Minus Query: 109 ccccggcggcgccgctgctccccgtgc 135 |||||||||||||||||||| |||||| Sbjct: 2422252 ccccggcggcgccgctgctcgccgtgc 2422226
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 cgctcctctcctcccgcgtcc 93 ||||||||||||||||||||| Sbjct: 658157 cgctcctctcctcccgcgtcc 658177 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ccctcctccgcgtcctcgcc 221 |||||||||||||||||||| Sbjct: 2284290 ccctcctccgcgtcctcgcc 2284309
>ref|XM_480266.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tccgccgcctccccggcggc 118 |||||||||||||||||||| Sbjct: 644 tccgccgcctccccggcggc 663
>ref|XM_467659.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tccccggcggcgccgctgct 127 |||||||||||||||||||| Sbjct: 810 tccccggcggcgccgctgct 791
>ref|XM_467226.1| Oryza sativa (japonica cultivar-group), mRNA Length = 780 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 ccacgcgctcctcctcaaga 405 |||||||||||||||||||| Sbjct: 402 ccacgcgctcctcctcaaga 421
>ref|NM_190675.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tccctcctccgcgtcctcgc 220 |||||||||||||||||||| Sbjct: 332 tccctcctccgcgtcctcgc 313
>gb|AC091324.10| Mus musculus chromosome 7, clone RP23-7G1, complete sequence Length = 225556 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 agacagaccaaagcagcatg 32 |||||||||||||||||||| Sbjct: 217976 agacagaccaaagcagcatg 217995
>gb|AC125781.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0058G18, complete sequence Length = 175397 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cctccggcctctccccgcgccacc 174 ||||||||| |||||||||||||| Sbjct: 35961 cctccggcccctccccgcgccacc 35984
>ref|XM_852171.1| PREDICTED: Canis familiaris similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I), transcript variant 4 (LOC476516), mRNA Length = 1957 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cgcctccccggcggcgccgctgct 127 ||||||||||| |||||||||||| Sbjct: 149 cgcctccccggaggcgccgctgct 172
>ref|XM_843737.1| PREDICTED: Canis familiaris similar to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDa subunit precursor (Ribophorin I) (RPN-I), transcript variant 3 (LOC476516), mRNA Length = 2110 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 cgcctccccggcggcgccgctgct 127 ||||||||||| |||||||||||| Sbjct: 149 cgcctccccggaggcgccgctgct 172
>gb|AC127595.3| Mus musculus BAC clone RP23-49I18 from chromosome 7, complete sequence Length = 239586 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 agacagaccaaagcagcatg 32 |||||||||||||||||||| Sbjct: 19677 agacagaccaaagcagcatg 19696
>emb|CR704629.2|CNS0G6N5 Tetraodon nigroviridis full-length cDNA Length = 958 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 567 cccggcggcgccgctgctcc 548
>emb|CR704538.2|CNS0G6KM Tetraodon nigroviridis full-length cDNA Length = 984 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 593 cccggcggcgccgctgctcc 574
>emb|CR701732.2|CNS0G4EO Tetraodon nigroviridis full-length cDNA Length = 900 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 504 cccggcggcgccgctgctcc 485
>emb|CR701585.2|CNS0G4AL Tetraodon nigroviridis full-length cDNA Length = 971 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 574 cccggcggcgccgctgctcc 555
>emb|CR691103.2|CNS0FW7F Tetraodon nigroviridis full-length cDNA Length = 897 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 504 cccggcggcgccgctgctcc 485
>emb|CR691497.2|CNS0FWID Tetraodon nigroviridis full-length cDNA Length = 900 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 504 cccggcggcgccgctgctcc 485
>emb|CR687325.2|CNS0FTAH Tetraodon nigroviridis full-length cDNA Length = 975 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 591 cccggcggcgccgctgctcc 572
>emb|CR686042.2|CNS0FSAU Tetraodon nigroviridis full-length cDNA Length = 957 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 565 cccggcggcgccgctgctcc 546
>emb|CR682757.2|CNS0FPRL Tetraodon nigroviridis full-length cDNA Length = 970 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 573 cccggcggcgccgctgctcc 554
>emb|CR681143.2|CNS0FOIR Tetraodon nigroviridis full-length cDNA Length = 960 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 567 cccggcggcgccgctgctcc 548
>emb|CR680681.2|CNS0FO5X Tetraodon nigroviridis full-length cDNA Length = 985 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 595 cccggcggcgccgctgctcc 576
>emb|CR679579.2|CNS0FNBB Tetraodon nigroviridis full-length cDNA Length = 957 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 586 cccggcggcgccgctgctcc 567
>emb|CR679527.2|CNS0FN9V Tetraodon nigroviridis full-length cDNA Length = 991 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 598 cccggcggcgccgctgctcc 579
>emb|CR678463.2|CNS0FMGD Tetraodon nigroviridis full-length cDNA Length = 949 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 602 cccggcggcgccgctgctcc 583
>emb|CR676191.2|CNS0FKPN Tetraodon nigroviridis full-length cDNA Length = 968 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 573 cccggcggcgccgctgctcc 554
>emb|CR676030.2|CNS0FKLG Tetraodon nigroviridis full-length cDNA Length = 989 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 591 cccggcggcgccgctgctcc 572
>emb|CR675170.2|CNS0FJXK Tetraodon nigroviridis full-length cDNA Length = 977 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 584 cccggcggcgccgctgctcc 565
>emb|CR675007.2|CNS0FJT1 Tetraodon nigroviridis full-length cDNA Length = 999 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 603 cccggcggcgccgctgctcc 584
>emb|CR673431.1|CNS0FIL9 Tetraodon nigroviridis full-length cDNA Length = 955 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 567 cccggcggcgccgctgctcc 548
>emb|CR672466.2|CNS0FHUG Tetraodon nigroviridis full-length cDNA Length = 985 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 589 cccggcggcgccgctgctcc 570
>emb|CR672195.2|CNS0FHMX Tetraodon nigroviridis full-length cDNA Length = 970 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 575 cccggcggcgccgctgctcc 556
>emb|CR669310.2|CNS0FFES Tetraodon nigroviridis full-length cDNA Length = 958 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 564 cccggcggcgccgctgctcc 545
>emb|CR663786.2|CNS0FB5C Tetraodon nigroviridis full-length cDNA Length = 992 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 601 cccggcggcgccgctgctcc 582
>emb|CR660763.2|CNS0F8TD Tetraodon nigroviridis full-length cDNA Length = 954 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cccggcggcgccgctgctcc 129 |||||||||||||||||||| Sbjct: 557 cccggcggcgccgctgctcc 538
>emb|AL118520.26|HSA346K17 Human DNA sequence from clone RP11-346K17 on chromosome 20 Contains the CDC91L1 gene for CDC91 cell division cycle 91-like 1 (S. cerevisiae), the MAP1LC3A gene for micotubule-associated protein 1 light chain 3 alpha, a cytochrome C oxidase III (MTCO3) pseudogene, the 3' end of a novel gene and three CpG islands, complete sequence Length = 157975 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 caggccctcctcaccacctc 154 |||||||||||||||||||| Sbjct: 37959 caggccctcctcaccacctc 37940
>gb|AY596278.1| Cnemotriccus fuscatus mitochondrion, complete genome Length = 17171 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 gccctcctcaccacctccgg 157 |||||||||||||||||||| Sbjct: 8752 gccctcctcaccacctccgg 8771
>gb|DQ397874.1| Cenarchaeum symbiosum clone C21F09, complete sequence Length = 37066 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 ccacctccggcctctccccg 167 |||||||||||||||||||| Sbjct: 19611 ccacctccggcctctccccg 19592
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tgcgcccgtacatccccaag 50 |||||||||||||||||||| Sbjct: 4026963 tgcgcccgtacatccccaag 4026982
>gb|AE011714.1| Xanthomonas axonopodis pv. citri str. 306, section 92 of 469 of the complete genome Length = 11283 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tgcgcccgtacatccccaag 50 |||||||||||||||||||| Sbjct: 896 tgcgcccgtacatccccaag 877
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 82 cctcccgcgtccggccatccgccgcctc 109 |||| ||||||||||| ||||||||||| Sbjct: 2499752 cctcgcgcgtccggccttccgccgcctc 2499779
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tccgccgcctccccggcggc 118 |||||||||||||||||||| Sbjct: 10066550 tccgccgcctccccggcggc 10066569
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cctccggcctctccccgcgccacc 174 ||||||||| |||||||||||||| Sbjct: 24847847 cctccggcccctccccgcgccacc 24847870
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tccccggcggcgccgctgct 127 |||||||||||||||||||| Sbjct: 30674588 tccccggcggcgccgctgct 30674569 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ccacgcgctcctcctcaaga 405 |||||||||||||||||||| Sbjct: 28291091 ccacgcgctcctcctcaaga 28291072 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ccggccatccgccgcctccccggc 115 |||||||||||||||||| ||||| Sbjct: 18964859 ccggccatccgccgcctcgccggc 18964836
>dbj|AP003289.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0683F02 Length = 153388 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 tccctcctccgcgtcctcgc 220 |||||||||||||||||||| Sbjct: 54468 tccctcctccgcgtcctcgc 54449
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0487D09 Length = 161531 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tccccggcggcgccgctgct 127 |||||||||||||||||||| Sbjct: 14735 tccccggcggcgccgctgct 14716
>dbj|AP005842.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22 Length = 68256 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 ccggccatccgccgcctccccggc 115 |||||||||||||||||| ||||| Sbjct: 20180 ccggccatccgccgcctcgccggc 20157
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tccccggcggcgccgctgct 127 |||||||||||||||||||| Sbjct: 186596 tccccggcggcgccgctgct 186577
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0462E11 Length = 166115 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tccgccgcctccccggcggc 118 |||||||||||||||||||| Sbjct: 61511 tccgccgcctccccggcggc 61530
>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1743_B12 Length = 175645 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ccacgcgctcctcctcaaga 405 |||||||||||||||||||| Sbjct: 82848 ccacgcgctcctcctcaaga 82829
>dbj|AK109142.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-155-E10, full insert sequence Length = 1083 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 tccccggcggcgccgctgct 127 |||||||||||||||||||| Sbjct: 810 tccccggcggcgccgctgct 791
>gb|BT024003.1| Zea mays clone EL01N0404E11 mRNA sequence Length = 1184 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 154 ccggcctctccccgcgccacccggagct 181 |||||||| |||||||||||||| |||| Sbjct: 602 ccggcctcgccccgcgccacccgcagct 629
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 tgcgcccgtacatccccaag 50 |||||||||||||||||||| Sbjct: 4030602 tgcgcccgtacatccccaag 4030621
>emb|AL929068.20| Mouse DNA sequence from clone RP23-9N11 on chromosome 2, complete sequence Length = 131152 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ccactcgctcctctcctccc 87 |||||||||||||||||||| Sbjct: 128022 ccactcgctcctctcctccc 128041
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 cctccggcctctccccgcgccacc 174 ||||||||| |||||||||||||| Sbjct: 25159517 cctccggcccctccccgcgccacc 25159540
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 99 tccgccgcctccccggcggc 118 |||||||||||||||||||| Sbjct: 10066435 tccgccgcctccccggcggc 10066454
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145890 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tccgccgcctccccggcggc 118 |||||||||||||||||||| Sbjct: 96071 tccgccgcctccccggcggc 96052 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,393,721 Number of Sequences: 3902068 Number of extensions: 2393721 Number of successful extensions: 55158 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 53981 Number of HSP's gapped (non-prelim): 1171 length of query: 450 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 428 effective length of database: 17,147,199,772 effective search space: 7339001502416 effective search space used: 7339001502416 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)