>gb|BT024011.1| Zea mays clone EL01N0402B04 mRNA sequence
          Length = 2018

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                       
Query: 191 caacacagagtgctgagaaagctgcaccactgtcaagtcttctcagttctctggttgcaa 250
           ||||||||||||| ||||||||||| || || ||||||||||||||||| ||||||||||
Sbjct: 786 caacacagagtgcggagaaagctgcgccgctctcaagtcttctcagttccctggttgcaa 845

               
Query: 251 aggg 254
           ||||
Sbjct: 846 aggg 849

>dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035O15, full
            insert sequence
          Length = 4175

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 57/62 (91%)
 Strand = Plus / Plus

                                                                        
Query: 205  gagaaagctgcaccactgtcaagtcttctcagttctctggttgcaaaggggctaatttct 264
            ||||||||||||||||| || |||||||||||||| |||||||||||||| || ||||||
Sbjct: 2631 gagaaagctgcaccactctctagtcttctcagttccctggttgcaaagggactgatttct 2690

              
Query: 265  tc 266
            ||
Sbjct: 2691 tc 2692



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                    
Query: 137  tgaagcctcatgcgccaaactctctccgcccacctttgcc 176
            ||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 2539 tgaagtctcaggcgccaaactctctgcgcccacctttgcc 2578

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                                  
Query: 205      gagaaagctgcaccactgtcaagtcttctcagttctctggttgcaaaggg 254
                ||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 22266601 gagaaagctgcaccactctctagtcttctcagttccctggttgcaaaggg 22266552



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 137      tgaagcctcatgcgccaaactctctccgcccacctttgcc 176
                ||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 22266693 tgaagtctcaggcgccaaactctctgcgcccacctttgcc 22266654

>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0070E11
          Length = 142855

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                               
Query: 205   gagaaagctgcaccactgtcaagtcttctcagttctctggttgcaaaggg 254
             ||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 86499 gagaaagctgcaccactctctagtcttctcagttccctggttgcaaaggg 86450



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 137   tgaagcctcatgcgccaaactctctccgcccacctttgcc 176
             ||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 86591 tgaagtctcaggcgccaaactctctgcgcccacctttgcc 86552

>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1155_H10
          Length = 140475

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Minus

                                                               
Query: 205   gagaaagctgcaccactgtcaagtcttctcagttctctggttgcaaaggg 254
             ||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 28609 gagaaagctgcaccactctctagtcttctcagttccctggttgcaaaggg 28560



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 137   tgaagcctcatgcgccaaactctctccgcccacctttgcc 176
             ||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 28701 tgaagtctcaggcgccaaactctctgcgcccacctttgcc 28662

>dbj|AK120477.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111I08, full
            insert sequence
          Length = 3486

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 47/50 (94%)
 Strand = Plus / Plus

                                                              
Query: 205  gagaaagctgcaccactgtcaagtcttctcagttctctggttgcaaaggg 254
            ||||||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct: 2083 gagaaagctgcaccactctctagtcttctcagttccctggttgcaaaggg 2132



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                    
Query: 137  tgaagcctcatgcgccaaactctctccgcccacctttgcc 176
            ||||| |||| |||||||||||||| ||||||||||||||
Sbjct: 1991 tgaagtctcaggcgccaaactctctgcgcccacctttgcc 2030

>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence
          Length = 187659

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 165   cccacctttgccaccaggtccaccaccaacaca 197
             |||||||||||||||| ||||||||||| ||||
Sbjct: 59394 cccacctttgccaccatgtccaccaccaccaca 59362

>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 166     ccacctttgccaccaggtccaccacc 191
               ||||||| ||||||||||||||||||
Sbjct: 3273252 ccaccttggccaccaggtccaccacc 3273277

>ref|XM_473397.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 384

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 105 tccatcttcctcagccagcg 124
           ||||||||||||||||||||
Sbjct: 149 tccatcttcctcagccagcg 130

>gb|AF109906.1|MMHC310M6 Mus musculus MHC class III region RD gene, partial cds; Bf, C2, G9A,
              NG22, G9, HSP70, HSP70, HSC70t, and smRNP genes, complete
              cds; G7A gene, partial cds; and unknown genes
          Length = 158405

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    gtcaagtcttctcagttctc 241
              ||||||||||||||||||||
Sbjct: 133090 gtcaagtcttctcagttctc 133071

>gb|AF109905.1|MMHC213L3 Mus musculus major histocompatibility locus class III regions Hsc70t
            gene, partial cds; smRNP, G7A, NG23, MutS homolog, CLCP,
            NG24, NG25, and NG26 genes, complete cds; and unknown
            genes
          Length = 135545

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gtcaagtcttctcagttctc 241
            ||||||||||||||||||||
Sbjct: 6522 gtcaagtcttctcagttctc 6503

>gb|AC115858.14| Mus musculus chromosome 7, clone RP24-285C16, complete sequence
          Length = 175843

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    ctcttccatcttcctcagcc 120
              ||||||||||||||||||||
Sbjct: 142917 ctcttccatcttcctcagcc 142898

>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21,
             complete sequence
          Length = 141787

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   tccatcttcctcagccagcg 124
             ||||||||||||||||||||
Sbjct: 52754 tccatcttcctcagccagcg 52773

>gb|AC087358.9| Homo sapiens chromosome 8, clone RP11-442A17, complete sequence
          Length = 183097

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 368    cttcagttgctaaggagacaccta 391
              |||||||||| |||||||||||||
Sbjct: 134782 cttcagttgccaaggagacaccta 134805

>emb|AL591481.5| Zebrafish DNA sequence from clone BUSM1-101L20 in linkage group 2
             Contains 37 TCR-alpha V segments (II-1 to II-37 according
             to annotation by Tatsuya Ota) two of which are pseudogenes
             (II-21, II-22) and a CpG island, complete sequence
          Length = 100317

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   cacatcagatgtcagtgctt 340
             ||||||||||||||||||||
Sbjct: 91497 cacatcagatgtcagtgctt 91478

>emb|AL592550.11| Zebrafish DNA sequence from clone BUSM1-18F12 in linkage group 2
             Contains 37 TCR-alpha V segments (II-11 to II-26, II-28 to
             II-48) three of which are pseudogenes (II-21, II-22,
             II-31), complete sequence
          Length = 96481

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 321   cacatcagatgtcagtgctt 340
             ||||||||||||||||||||
Sbjct: 60641 cacatcagatgtcagtgctt 60622

>gb|AC087117.9| Mus Musculus Strain C57BL6/J chromosome 17 BAC, RP23-349B4, Complete
             Sequence, complete sequence
          Length = 221899

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   gtcaagtcttctcagttctc 241
             ||||||||||||||||||||
Sbjct: 92392 gtcaagtcttctcagttctc 92373

>gb|AF397036.1| Mus musculus strain B10.A(2R) heat shock protein Hsc70t (Hsc70t)
            gene, partial cds; and small ribonuclear protein G7b
            (G7b) gene, viral envelope protein G7e (G7e) gene,
            valyl-tRNA-synthetase G7a/Bat6 (G7a) gene, G7c (G7c)
            gene, G7d (G7d) gene, and DNA mismatch repair protein
            Msh5 (Msh5) gene, complete cds
          Length = 72790

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gtcaagtcttctcagttctc 241
            ||||||||||||||||||||
Sbjct: 6251 gtcaagtcttctcagttctc 6232

>gb|AF397035.1| Mus musculus strain B10.A(1R) heat shock protein Hsc70t (Hsc70t)
            gene, partial cds; and small ribonuclear protein G7b
            (G7b) gene, viral envelope protein G7e (G7e) gene,
            valyl-tRNA-synthetase G7a/Bat6 (G7a) gene, G7c (G7c)
            gene, G7d (G7d) gene, and DNA mismatch repair protein
            Msh5 (Msh5) gene, complete cds
          Length = 78679

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gtcaagtcttctcagttctc 241
            ||||||||||||||||||||
Sbjct: 5712 gtcaagtcttctcagttctc 5693

>dbj|AK162880.1| Mus musculus adult male hypothalamus cDNA, RIKEN full-length enriched
            library, clone:A230079H06 product:hypothetical protein,
            full insert sequence
          Length = 1588

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gtcaagtcttctcagttctc 241
            ||||||||||||||||||||
Sbjct: 1382 gtcaagtcttctcagttctc 1363

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 105      tccatcttcctcagccagcg 124
                ||||||||||||||||||||
Sbjct: 27316826 tccatcttcctcagccagcg 27316845

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 307      aaatcaagtccgagcacatc 326
                ||||||||||||||||||||
Sbjct: 11162415 aaatcaagtccgagcacatc 11162434

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 165      cccacctttgccaccaggtccacc 188
                |||||| |||||||||||||||||
Sbjct: 27334951 cccaccattgccaccaggtccacc 27334974

>dbj|AP003635.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0686E06
          Length = 150474

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   cccacctttgccaccaggtccacc 188
             |||||| |||||||||||||||||
Sbjct: 77778 cccaccattgccaccaggtccacc 77801

>dbj|AP004398.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0438G07
          Length = 138878

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 307  aaatcaagtccgagcacatc 326
            ||||||||||||||||||||
Sbjct: 2391 aaatcaagtccgagcacatc 2410

>gb|U85207.1|MMU85207 Mus musculus snRNP core Sm protein homolog Sm-X5 (Sm-X5) gene, two
            alternative splice forms, complete cds
          Length = 24355

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  gtcaagtcttctcagttctc 241
            ||||||||||||||||||||
Sbjct: 4665 gtcaagtcttctcagttctc 4646


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,883,158
Number of Sequences: 3902068
Number of extensions: 3883158
Number of successful extensions: 71163
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71041
Number of HSP's gapped (non-prelim): 122
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)