ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet31h09 |
|---|---|
| Clone Library Name | barley_pub |
>ROC2_AGRRH (P49408) Cytokinin-beta-glucosidase (EC 3.2.1.-) (ROL C protein)| Length = 180 Score = 30.8 bits (68), Expect = 0.90 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 16/71 (22%) Frame = -1 Query: 177 TASAMRHPLQERSDLSLSLCVDRDGGRQQ---LDLY-------------RAPYNHLSANL 46 +AS R PL E + S+ +D +GGRQ L LY PYN L Sbjct: 30 SASKERTPLTEPGE-GQSMDIDEEGGRQDPGILYLYVDCPTMMRCFYGGSLPYNSRHGAL 88 Query: 45 ASSVPPYQQGV 13 +++PPYQ+ V Sbjct: 89 ITNLPPYQKDV 99
>SYFA_HELPJ (Q9ZKF9) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 328 Score = 28.1 bits (61), Expect = 5.9 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = -2 Query: 260 LRAEERGATAAQARSPTTASRRACSRRQ---LPLPCAILFKKDQISLSLFVSIETAAASS 90 L EE+ A A + A +A ++ + L KK++I +SLF +I+T+++ Sbjct: 41 LNGEEKNAFAKEIHHYKQAFEKAFELKKKAIMELELEERLKKEKIDVSLFNAIKTSSSHP 100 Query: 89 WTYTARPITIF 57 YT I F Sbjct: 101 LNYTKNKIIEF 111
>ROLC_NICGL (P07051) Cytokinin-beta-glucosidase (EC 3.2.1.-) (Protein ROL C)| Length = 180 Score = 28.1 bits (61), Expect = 5.9 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 16/71 (22%) Frame = -1 Query: 177 TASAMRHPLQERSDLSLSLCVDRDGGRQQ---LDLY-------------RAPYNHLSANL 46 +AS R+PL E + + S+ VD +GG + L LY PYN L Sbjct: 30 SASDERNPLTEPGE-NQSMDVDEEGGTRDPGILYLYVDCPTMMQCFYGTSFPYNSRHGAL 88 Query: 45 ASSVPPYQQGV 13 +++PPYQ+ V Sbjct: 89 LTNLPPYQKDV 99
>TBA1_NEUCR (P38668) Tubulin alpha-A chain| Length = 453 Score = 28.1 bits (61), Expect = 5.9 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 3/64 (4%) Frame = -1 Query: 216 PDHRE*TRMQPPATASAMRHPLQERSDLSLSLCVDRDGG---RQQLDLYRAPYNHLSANL 46 P R T + P A H E SD++ VD + G R+ LD+ R Y HL+ + Sbjct: 174 PAPRVATAVVEPYNAVLATHSTLEHSDVTF--LVDNEAGMTCRRNLDIPRPSYEHLNRLI 231 Query: 45 ASSV 34 A V Sbjct: 232 AQVV 235
>NARX_SHIFL (P0AFA4) Nitrate/nitrite sensor protein narX (EC 2.7.13.3)| Length = 598 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 108 LDRHKERERDLIFLEEDGAWQRQL 179 LDRH+ER++ LI +EE R+L Sbjct: 375 LDRHQERQQQLIVMEERATIAREL 398
>NARX_ECOLI (P0AFA2) Nitrate/nitrite sensor protein narX (EC 2.7.13.3)| Length = 598 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 108 LDRHKERERDLIFLEEDGAWQRQL 179 LDRH+ER++ LI +EE R+L Sbjct: 375 LDRHQERQQQLIVMEERATIAREL 398
>NARX_ECO57 (P0AFA3) Nitrate/nitrite sensor protein narX (EC 2.7.13.3)| Length = 598 Score = 28.1 bits (61), Expect = 5.9 Identities = 12/24 (50%), Positives = 17/24 (70%) Frame = +3 Query: 108 LDRHKERERDLIFLEEDGAWQRQL 179 LDRH+ER++ LI +EE R+L Sbjct: 375 LDRHQERQQQLIVMEERATIAREL 398
>GAGB1_HUMAN (O75459) G antigen family B 1 protein (Prostate-associated gene 1| protein) (PAGE-1) (GAGE-9) (AL5) Length = 146 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -2 Query: 293 SPSASTDWRPTLRAEERGATAAQARSPTTASR 198 SP+ S D P E+ GA+AAQ + P S+ Sbjct: 33 SPTQSQDSTPAEEREDEGASAAQGQEPEADSQ 64
>SYFA_HELPY (P56146) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 328 Score = 27.7 bits (60), Expect = 7.7 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = -2 Query: 260 LRAEERGATAAQARSPTTASRRACSRRQ---LPLPCAILFKKDQISLSLFVSIETAAASS 90 L EE+ A A + A +A ++ + L KK++I +SLF +I+T+++ Sbjct: 41 LNGEEKNAFAKEIHHYKQAFEKAFEWKKKAIIELELEERLKKEKIDVSLFNAIKTSSSHP 100 Query: 89 WTYTARPITIF 57 YT I F Sbjct: 101 LNYTKNKIIEF 111
>MUC1_XENLA (Q05049) Integumentary mucin C.1 (FIM-C.1) (Fragment)| Length = 662 Score = 27.7 bits (60), Expect = 7.7 Identities = 19/75 (25%), Positives = 32/75 (42%) Frame = -2 Query: 299 TPSPSASTDWRPTLRAEERGATAAQARSPTTASRRACSRRQLPLPCAILFKKDQISLSLF 120 T +P+ + + A T A A +PTTA+ +A + P+P K + + Sbjct: 71 TTAPATTAAGKAPTTAAATAPTTAAAGAPTTATGKAPATAAAPVPTTAASKAPTTAAAAT 130 Query: 119 VSIETAAASSWTYTA 75 S AAA + +A Sbjct: 131 HSTAAAAAPTTAASA 145
>Y215_ADE02 (P03291) Hypothetical protein F-215| Length = 215 Score = 27.7 bits (60), Expect = 7.7 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -2 Query: 299 TPSPSASTDWRPTLRAEERGATAAQARSPTTASR--RACSRRQLPLPCAI 156 +P PS+S A R +TAA +RSP T++R +C R PC + Sbjct: 89 SPGPSSSRRG-----ARFRRSTAASSRSPATSARSTSSCPRAAPTCPCPL 133
>POLN_HEVPA (P33424) Non-structural polyprotein (EC 2.7.7.48) (RNA-directed RNA| polymerase/Helicase) Length = 1693 Score = 27.3 bits (59), Expect = 10.0 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 2/43 (4%) Frame = -2 Query: 296 PSPSASTDWRPTLRAEERG--ATAAQARSPTTASRRACSRRQL 174 P P + D PTL A RG A A AR+P + A RR L Sbjct: 739 PLPPPAPDPSPTLSAPARGEPAPGATARAPAITHQTARHRRLL 781
>GIGAN_ORYSA (Q9AWL7) GIGANTEA protein| Length = 1160 Score = 27.3 bits (59), Expect = 10.0 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = +2 Query: 56 ERWL*GARYKSSCWRPPSRSTQRERE 133 E+W+ G ++ S W PP S Q++ + Sbjct: 6 EKWIDGLQFSSLFWPPPQDSQQKQAQ 31
>DDX23_PONPY (Q5RC67) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)| (DEAD box protein 23) Length = 820 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 57 KDGYRARGISPAAGGRRLDRHKERERD 137 + G R+R S + R RHKERERD Sbjct: 54 RGGSRSRSRSRSKSAERERRHKERERD 80
>DDX23_HUMAN (Q9BUQ8) Probable ATP-dependent RNA helicase DDX23 (EC 3.6.1.-)| (DEAD box protein 23) (100 kDa U5 snRNP-specific protein) (U5-100kD) (PRP28 homolog) Length = 820 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/27 (48%), Positives = 16/27 (59%) Frame = +3 Query: 57 KDGYRARGISPAAGGRRLDRHKERERD 137 + G R+R S + R RHKERERD Sbjct: 54 RGGSRSRSRSRSKSAERERRHKERERD 80 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,683,805 Number of Sequences: 219361 Number of extensions: 596228 Number of successful extensions: 1957 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 1894 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1956 length of database: 80,573,946 effective HSP length: 78 effective length of database: 63,463,788 effective search space used: 1523130912 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
