>ENGA_SYNPX (Q7U8G2) GTP-binding protein engA|
          Length = 455

 Score = 32.7 bits (73), Expect = 0.37
 Identities = 23/61 (37%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
 Frame = -1

Query: 285 RLVGLAGA--------GPALDGNLKPFEGIFSTDVVGGAIQALDGANHDGRRCLGRTEAD 130
           RLV  AG         GP   G  + F+ I  +DV    I ALDG     +R  GR E D
Sbjct: 228 RLVDTAGIRRRRSVNYGPEYFGINRSFKAIDRSDVCVLVIDALDGVTEQDQRLAGRIEED 287

Query: 129 G 127
           G
Sbjct: 288 G 288

>ENGA_PROMM (Q7V8X0) GTP-binding protein engA|
          Length = 455

 Score = 32.3 bits (72), Expect = 0.49
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -1

Query: 261 GPALDGNLKPFEGIFSTDVVGGAIQALDGANHDGRRCLGRTEADG 127
           GP   G  + F+ I  +DV    I ALDG     +R  GR E DG
Sbjct: 244 GPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEDDG 288

>ENGA_PROMA (Q7VDI8) GTP-binding protein engA|
          Length = 456

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -1

Query: 261 GPALDGNLKPFEGIFSTDVVGGAIQALDGANHDGRRCLGRTEADG 127
           GP   G  + F+ I  +DV    I ALDG     +R  GR E +G
Sbjct: 244 GPEFFGINRSFKAIERSDVCVLVIDALDGVTEQDQRLAGRIEEEG 288

>TRUB_GLUOX (Q5FQM1) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 333

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = -1

Query: 345 EARLEGDAEGAVVVEPPDRLRLVGLAGAGPALDGNLKPFEGIFSTDVVGG 196
           E+R   D EG V+   P+R     +    PAL GN+     +FS   VGG
Sbjct: 82  ESRTTDDLEGEVLATSPNRPTDDQIRAVLPALTGNVMQVPPVFSALRVGG 131

>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1|
           (Rab3-interacting molecule 1) (RIM 1)
          Length = 1692

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 19/65 (29%), Positives = 30/65 (46%)
 Frame = -3

Query: 202 RGSNPST*RSQPRRPALPRPHRS*RLGAEREHRKAPAETPSWKTXXXXXXLACCLRSEGT 23
           R  + S+ +S+  RP+ P+PHRS R G +R+   + +E     T          L SE  
Sbjct: 497 RNDSLSSDQSESVRPSPPKPHRSKRGGKKRQMSVSSSEEEGVSTPEYTSCEDVELESESV 556

Query: 22  LVSGE 8
              G+
Sbjct: 557 SEKGD 561

>CO4A2_HUMAN (P08572) Collagen alpha-2(IV) chain precursor|
          Length = 1712

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = +1

Query: 226 LKGLQVAIKCRSGAGETYETQTVGRLDDNGAFSIPLQAGLLREDGRLDRDCFAQLHSAPG 405
           LKG+   I      G   +++T+    + G   +P   G+  +DG   RD        PG
Sbjct: 531 LKGVPGNIGAPGPKGAKGDSRTITTKGERGQPGVPGVPGMKGDDGSPGRDGLDGFPGLPG 590

Query: 406 TPCDG 420
            P DG
Sbjct: 591 PPGDG 595

>SECA1_MYCTU (P0A5Y8) Preprotein translocase secA 1 subunit|
          Length = 949

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = -1

Query: 390  ELGEAVAVQPAVFAQEARLEGDAEGAVVVEPPDRLRLVGLAGAGPALDGNLKPFEGIFST 211
            EL E  A   A   Q + ++G A        P  LR  G+A   PAL  +    +G    
Sbjct: 851  ELAEFAAAAAAAAQQRSAVDGGARERA----PSALRAKGVASESPALTYSGPAEDGSAQV 906

Query: 210  DVVGGAIQALD-----GANHDGRRCLGRTEADG*EQSESTEKR 97
               GG           GA+   RR   R +  G +  +S +KR
Sbjct: 907  QRNGGGAHKTPAGVPAGASRRERREAARRQGRGAKPPKSVKKR 949

>SECA1_MYCBO (P0A5Y9) Preprotein translocase secA 1 subunit|
          Length = 949

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 5/103 (4%)
 Frame = -1

Query: 390  ELGEAVAVQPAVFAQEARLEGDAEGAVVVEPPDRLRLVGLAGAGPALDGNLKPFEGIFST 211
            EL E  A   A   Q + ++G A        P  LR  G+A   PAL  +    +G    
Sbjct: 851  ELAEFAAAAAAAAQQRSAVDGGARERA----PSALRAKGVASESPALTYSGPAEDGSAQV 906

Query: 210  DVVGGAIQALD-----GANHDGRRCLGRTEADG*EQSESTEKR 97
               GG           GA+   RR   R +  G +  +S +KR
Sbjct: 907  QRNGGGAHKTPAGVPAGASRRERREAARRQGRGAKPPKSVKKR 949

>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1|
            light chain LC2]
          Length = 2774

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -1

Query: 123  EQSESTEKRQPRPHHGRPXXXXXCWPAASA 34
            EQ E  E R P PHH  P      WP   A
Sbjct: 2085 EQPEK-ETRSPSPHHPMPMGHSSLWPETEA 2113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,227,313
Number of Sequences: 219361
Number of extensions: 882290
Number of successful extensions: 2632
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2630
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)