| Clone Name | baet31e11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK059409.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C05, full insert sequence Length = 1026 Score = 174 bits (88), Expect = 2e-40 Identities = 211/252 (83%) Strand = Plus / Plus Query: 164 tcgtggttggctccgtcaagtgcttggattgctcccccgacgacgtcagtgctgaagatg 223 |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 173 tcgtggttggctccatcaagtgcttggattgctctcccgacgacgtcaaagctgaggatg 232 Query: 224 ccctcaaagggcttcaggttgccatcaagtgcaggtccggcgccggcgagacctacgaga 283 | ||| ||||||||| || | ||||| ||||| ||||||||||||||| ||||||||| Sbjct: 233 cgttcagagggcttcaagtaggcatcatgtgcaactccggcgccggcgaggcctacgaga 292 Query: 284 cgcagacggtcgggcggctcgacgacaacggcgccttcagcatccccctccaggcgggcc 343 || ||| | || | | |||||||| ||||||| |||||||||||| ||| || | || Sbjct: 293 cgaagatgctcagcggcctcgacgagaacggcggcttcagcatcccgctcgccgccgacc 352 Query: 344 tcctgcgcgaagacggcaggctggaccgcgactgcttcgcccagctccacagcgcgcccg 403 |||| ||||| |||||| ||||||| ||||||||||| ||||||||||||||||| | Sbjct: 353 tcctccgcgacgacggcgagctggacaaggactgcttcgcacagctccacagcgcgccgg 412 Query: 404 gcacgccgtgcg 415 |||||||||| Sbjct: 413 agacgccgtgcg 424
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 1e-19 Identities = 152/185 (82%) Strand = Plus / Minus Query: 231 agggcttcaggttgccatcaagtgcaggtccggcgccggcgagacctacgagacgcagac 290 ||||||||| || | ||||| ||||| ||||||||||||||| ||||||||||| ||| Sbjct: 7648076 agggcttcaagtaggcatcatgtgcaactccggcgccggcgaggcctacgagacgaagat 7648017 Query: 291 ggtcgggcggctcgacgacaacggcgccttcagcatccccctccaggcgggcctcctgcg 350 | || | | |||||||| ||||||| |||||||||||| ||| || | |||||| || Sbjct: 7648016 gctcagcggcctcgacgagaacggcggcttcagcatcccgctcgccgccgacctcctccg 7647957 Query: 351 cgaagacggcaggctggaccgcgactgcttcgcccagctccacagcgcgcccggcacgcc 410 ||| |||||| ||||||| ||||||||||| ||||||||||||||||| | ||||| Sbjct: 7647956 cgacgacggcgagctggacaaggactgcttcgcacagctccacagcgcgccggagacgcc 7647897 Query: 411 gtgcg 415 ||||| Sbjct: 7647896 gtgcg 7647892 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 164 tcgtggttggctccgtcaagtgcttggattgctcccccgacgacgtcagtgctgaagatg 223 |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 7648556 tcgtggttggctccatcaagtgcttggattgctctcccgacgacgtcaaagctgaggatg 7648497 Query: 224 c 224 | Sbjct: 7648496 c 7648496
>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0096L14, from chromosome 3, complete sequence Length = 131142 Score = 105 bits (53), Expect = 1e-19 Identities = 152/185 (82%) Strand = Plus / Plus Query: 231 agggcttcaggttgccatcaagtgcaggtccggcgccggcgagacctacgagacgcagac 290 ||||||||| || | ||||| ||||| ||||||||||||||| ||||||||||| ||| Sbjct: 67214 agggcttcaagtaggcatcatgtgcaactccggcgccggcgaggcctacgagacgaagat 67273 Query: 291 ggtcgggcggctcgacgacaacggcgccttcagcatccccctccaggcgggcctcctgcg 350 | || | | |||||||| ||||||| |||||||||||| ||| || | |||||| || Sbjct: 67274 gctcagcggcctcgacgagaacggcggcttcagcatcccgctcgccgccgacctcctccg 67333 Query: 351 cgaagacggcaggctggaccgcgactgcttcgcccagctccacagcgcgcccggcacgcc 410 ||| |||||| ||||||| ||||||||||| ||||||||||||||||| | ||||| Sbjct: 67334 cgacgacggcgagctggacaaggactgcttcgcacagctccacagcgcgccggagacgcc 67393 Query: 411 gtgcg 415 ||||| Sbjct: 67394 gtgcg 67398 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Plus Query: 164 tcgtggttggctccgtcaagtgcttggattgctcccccgacgacgtcagtgctgaagatg 223 |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 66734 tcgtggttggctccatcaagtgcttggattgctctcccgacgacgtcaaagctgaggatg 66793 Query: 224 c 224 | Sbjct: 66794 c 66794
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 1e-19 Identities = 152/185 (82%) Strand = Plus / Minus Query: 231 agggcttcaggttgccatcaagtgcaggtccggcgccggcgagacctacgagacgcagac 290 ||||||||| || | ||||| ||||| ||||||||||||||| ||||||||||| ||| Sbjct: 7645911 agggcttcaagtaggcatcatgtgcaactccggcgccggcgaggcctacgagacgaagat 7645852 Query: 291 ggtcgggcggctcgacgacaacggcgccttcagcatccccctccaggcgggcctcctgcg 350 | || | | |||||||| ||||||| |||||||||||| ||| || | |||||| || Sbjct: 7645851 gctcagcggcctcgacgagaacggcggcttcagcatcccgctcgccgccgacctcctccg 7645792 Query: 351 cgaagacggcaggctggaccgcgactgcttcgcccagctccacagcgcgcccggcacgcc 410 ||| |||||| ||||||| ||||||||||| ||||||||||||||||| | ||||| Sbjct: 7645791 cgacgacggcgagctggacaaggactgcttcgcacagctccacagcgcgccggagacgcc 7645732 Query: 411 gtgcg 415 ||||| Sbjct: 7645731 gtgcg 7645727 Score = 81.8 bits (41), Expect = 2e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 164 tcgtggttggctccgtcaagtgcttggattgctcccccgacgacgtcagtgctgaagatg 223 |||||||||||||| ||||||||||||||||||| ||||||||||||| ||||| |||| Sbjct: 7646391 tcgtggttggctccatcaagtgcttggattgctctcccgacgacgtcaaagctgaggatg 7646332 Query: 224 c 224 | Sbjct: 7646331 c 7646331
>gb|AC110245.10| Mus musculus chromosome 3, clone RP23-251B16, complete sequence Length = 241132 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 330 cctccaggcgggcctcctgcg 350 ||||||||||||||||||||| Sbjct: 37622 cctccaggcgggcctcctgcg 37642
>gb|AC170175.2| Mus musculus chromosome 3, clone wi1-2236H9, complete sequence Length = 39765 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 330 cctccaggcgggcctcctgcg 350 ||||||||||||||||||||| Sbjct: 1886 cctccaggcgggcctcctgcg 1866
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 ctgcgcgaagacggcaggct 365 |||||||||||||||||||| Sbjct: 267245 ctgcgcgaagacggcaggct 267264
>ref|XM_475251.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 573 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 caggtccggcgccggcgaga 274 |||||||||||||||||||| Sbjct: 204 caggtccggcgccggcgaga 223
>ref|NM_194858.1| Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.6), mRNA Length = 699 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 315 cgactgcttcgcgcagctgcacagcgcg 342
>ref|NM_194857.1| Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBa0031A07.5), mRNA Length = 675 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 291 cgactgcttcgcgcagctgcacagcgcg 318
>ref|NM_194856.1| Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBb0016M10.14), mRNA Length = 627 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 243 cgactgcttcgcgcagctgcacagcgcg 270
>ref|NM_194855.1| Oryza sativa (japonica cultivar-group) putative proline-rich protein (OSJNBb0016M10.13), mRNA Length = 660 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 276 cgactgcttcgcgcagctgcacagcgcg 303
>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0044P19, complete sequence Length = 176917 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 caggtccggcgccggcgaga 274 |||||||||||||||||||| Sbjct: 105517 caggtccggcgccggcgaga 105536
>ref|XM_369007.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00237.4) partial mRNA Length = 1146 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 gtgcaggtccggcgccggcg 271 |||||||||||||||||||| Sbjct: 798 gtgcaggtccggcgccggcg 779
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 caggtccggcgccggcgaga 274 |||||||||||||||||||| Sbjct: 48098 caggtccggcgccggcgaga 48117
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 acagcgcgcccggcacgccg 411 |||||||||||||||||||| Sbjct: 1839202 acagcgcgcccggcacgccg 1839183
>gb|AC091665.3| Oryza sativa chromosome 10 clone OSJNBb0016M10, complete sequence Length = 118101 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 110682 cgactgcttcgcgcagctgcacagcgcg 110655 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 102565 cgactgcttcgcgcagctgcacagcgcg 102538
>gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, complete sequence Length = 134553 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 34735 cgactgcttcgcgcagctgcacagcgcg 34708 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 26995 cgactgcttcgcgcagctgcacagcgcg 26968 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 18072 cgactgcttcgcgcagctgcacagcgcg 18045 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 9985 cgactgcttcgcgcagctgcacagcgcg 9958
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2946313 cgactgcttcgcgcagctgcacagcgcg 2946286 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2938573 cgactgcttcgcgcagctgcacagcgcg 2938546 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2929650 cgactgcttcgcgcagctgcacagcgcg 2929623 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2921533 cgactgcttcgcgcagctgcacagcgcg 2921506
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 caggtccggcgccggcgaga 274 |||||||||||||||||||| Sbjct: 20792293 caggtccggcgccggcgaga 20792312
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gaggcagcgccggccgtcgt 167 |||||||||||||||||||| Sbjct: 7937016 gaggcagcgccggccgtcgt 7937035
>dbj|AK073384.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030B15, full insert sequence Length = 829 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 caggtccggcgccggcgaga 274 |||||||||||||||||||| Sbjct: 304 caggtccggcgccggcgaga 323
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 392 acagcgcgcccggcacgccg 411 |||||||||||||||||||| Sbjct: 3421596 acagcgcgcccggcacgccg 3421615
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2946234 cgactgcttcgcgcagctgcacagcgcg 2946207 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2938494 cgactgcttcgcgcagctgcacagcgcg 2938467 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2929571 cgactgcttcgcgcagctgcacagcgcg 2929544 Score = 40.1 bits (20), Expect = 5.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 372 cgactgcttcgcccagctccacagcgcg 399 |||||||||||| ||||| ||||||||| Sbjct: 2921484 cgactgcttcgcgcagctgcacagcgcg 2921457
>dbj|AB070954.1| Streptomyces avermitilis peptide-5 biosynthetic gene cluster Length = 13123 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 gaggcagcgccggccgtcgt 167 |||||||||||||||||||| Sbjct: 6844 gaggcagcgccggccgtcgt 6825 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,387,228 Number of Sequences: 3902068 Number of extensions: 2387228 Number of successful extensions: 46788 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 46261 Number of HSP's gapped (non-prelim): 519 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)