| Clone Name | baet31e06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK065115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001O08, full insert sequence Length = 1417 Score = 317 bits (160), Expect = 2e-83 Identities = 238/264 (90%) Strand = Plus / Plus Query: 181 ggagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgctgccgcactgcgcc 240 |||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| Sbjct: 142 ggagcgggagcggatgtgccagctgttcgacgaggcctccgagcgctgccgcaccgcgcc 201 Query: 241 catggagggcatcaccttctcgcccgaggacctcgaatccgccgtcgagaccaccgacat 300 |||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||| Sbjct: 202 catggagggcgtctccttctcgcccgaggacctcgactccgccgtcgagtccaccgacat 261 Query: 301 cgacactgacattggctcactcattaaagggacagtattcatgaccacttcaaatggtgc 360 |||||| || || ||||||||||||||||| ||||| ||||||||||||||||||||||| Sbjct: 262 cgacaccgatatcggctcactcattaaaggaacagtgttcatgaccacttcaaatggtgc 321 Query: 361 atttattgacattcaatcaaaggctactgctttcttgcctatagatgaggcatgccttct 420 || | |||| || ||||| ||| ||||||||||||||||| | ||||||||||||||||| Sbjct: 322 atatgttgatatccaatcgaagtctactgctttcttgcctttggatgaggcatgccttct 381 Query: 421 tgatattgaccatatagaggaggc 444 ||| | |||||||||| ||||| Sbjct: 382 cgatgtcaaccatatagaagaggc 405 Score = 42.1 bits (21), Expect = 1.5 Identities = 42/49 (85%) Strand = Plus / Plus Query: 50 atggcgtccttggtccagcacgtcgcagggctcgcgtgcccaccgctct 98 ||||||||| ||| ||||||||||| ||||| ||| |||| ||||||| Sbjct: 58 atggcgtccctggcgcagcacgtcgcggggctggcgagcccgccgctct 106
>gb|AY105404.1| Zea mays PCO138567 mRNA sequence Length = 1498 Score = 285 bits (144), Expect = 6e-74 Identities = 328/388 (84%), Gaps = 6/388 (1%) Strand = Plus / Plus Query: 45 agaggatggcgtccttggtccagcacgtcgcagggctcgcgtgcccaccgctctccggcg 104 |||||||||||||| ||| ||||||||||| || || ||||||| || || ||||||| Sbjct: 89 agaggatggcgtccctggcgcagcacgtcgcgggcctaccgtgcccccctctatccggcg 148 Query: 105 cgtcgcgccg---ccccggggcgccgatgcggcc---gtccgcgctggtctgcgggacgt 158 |||||||||| ||||| ||||| || |||||| ||| ||||| || ||||| || | Sbjct: 149 cgtcgcgccgtcgccccgcggcgcagaggcggcctccgtcggcgcttgtgtgcggtacct 208 Query: 159 acgtgctgagcaaggatgagaaggagcgggagcggatgcgcacgctgttcgacgaggcct 218 | | ||||| |||||| ||| ||||||||||||||||||| | |||||||||| |||| Sbjct: 209 atgcgctgaccaaggacgagcgggagcgggagcggatgcgccaggtgttcgacgacgcct 268 Query: 219 ccgagcgctgccgcactgcgcccatggagggcatcaccttctcgcccgaggacctcgaat 278 |||||||||||||||| ||||||||||||||| || ||||||| ||||| |||||||| Sbjct: 269 ccgagcgctgccgcaccgcgcccatggagggcgtcgccttctcccccgacgacctcgaca 328 Query: 279 ccgccgtcgagaccaccgacatcgacactgacattggctcactcattaaagggacagtat 338 ||||||||||| |||||||||| ||||| || || ||||| ||||||||||| ||||||| Sbjct: 329 ccgccgtcgagtccaccgacatagacacggagatcggctcgctcattaaaggaacagtat 388 Query: 339 tcatgaccacttcaaatggtgcatttattgacattcaatcaaaggctactgctttcttgc 398 | ||||| || ||||||||||||| ||| ||||| ||||| ||| |||||||||| |||| Sbjct: 389 ttatgactacctcaaatggtgcatatatcgacatccaatccaagtctactgcttttttgc 448 Query: 399 ctatagatgaggcatgccttcttgatat 426 | ||||||||||||| ||||||||||| Sbjct: 449 ccttagatgaggcatgtcttcttgatat 476
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 281 bits (142), Expect = 1e-72 Identities = 243/276 (88%), Gaps = 3/276 (1%) Strand = Plus / Minus Query: 50 atggcgtccttggtccagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcg 109 ||||||||| ||| ||||||||||| ||||| ||| |||| ||||||||||||||| || Sbjct: 11328789 atggcgtccctggcgcagcacgtcgcggggctggcgagcccgccgctctccggcgcgccg 11328730 Query: 110 cg---ccgccccggggcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctg 166 || |||||||| |||||| | ||||||||| |||||||| ||||||||||||| ||| Sbjct: 11328729 cggcgccgccccgcggcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctc 11328670 Query: 167 agcaaggatgagaaggagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgc 226 | |||||| ||| |||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 11328669 accaaggaggagcgggagcgggagcggatgtgccagctgttcgacgaggcctccgagcgc 11328610 Query: 227 tgccgcactgcgcccatggagggcatcaccttctcgcccgaggacctcgaatccgccgtc 286 |||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct: 11328609 tgccgcaccgcgcccatggagggcgtctccttctcgcccgaggacctcgactccgccgtc 11328550 Query: 287 gagaccaccgacatcgacactgacattggctcactc 322 ||| |||||||||||||||| || || ||||||||| Sbjct: 11328549 gagtccaccgacatcgacaccgatatcggctcactc 11328514 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 323 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 382 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 11326833 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 11326774 Query: 383 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 442 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 11326773 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 11326714 Query: 443 gcaggcatcc 452 ||||| |||| Sbjct: 11326713 gcagggatcc 11326704
>gb|AC145491.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0085H08, from chromosome 3, complete sequence Length = 130656 Score = 281 bits (142), Expect = 1e-72 Identities = 243/276 (88%), Gaps = 3/276 (1%) Strand = Plus / Minus Query: 50 atggcgtccttggtccagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcg 109 ||||||||| ||| ||||||||||| ||||| ||| |||| ||||||||||||||| || Sbjct: 107742 atggcgtccctggcgcagcacgtcgcggggctggcgagcccgccgctctccggcgcgccg 107683 Query: 110 cg---ccgccccggggcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctg 166 || |||||||| |||||| | ||||||||| |||||||| ||||||||||||| ||| Sbjct: 107682 cggcgccgccccgcggcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctc 107623 Query: 167 agcaaggatgagaaggagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgc 226 | |||||| ||| |||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 107622 accaaggaggagcgggagcgggagcggatgtgccagctgttcgacgaggcctccgagcgc 107563 Query: 227 tgccgcactgcgcccatggagggcatcaccttctcgcccgaggacctcgaatccgccgtc 286 |||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct: 107562 tgccgcaccgcgcccatggagggcgtctccttctcgcccgaggacctcgactccgccgtc 107503 Query: 287 gagaccaccgacatcgacactgacattggctcactc 322 ||| |||||||||||||||| || || ||||||||| Sbjct: 107502 gagtccaccgacatcgacaccgatatcggctcactc 107467 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 323 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 382 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 105786 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 105727 Query: 383 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 442 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 105726 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 105667 Query: 443 gcaggcatcc 452 ||||| |||| Sbjct: 105666 gcagggatcc 105657
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 281 bits (142), Expect = 1e-72 Identities = 243/276 (88%), Gaps = 3/276 (1%) Strand = Plus / Minus Query: 50 atggcgtccttggtccagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcg 109 ||||||||| ||| ||||||||||| ||||| ||| |||| ||||||||||||||| || Sbjct: 11325552 atggcgtccctggcgcagcacgtcgcggggctggcgagcccgccgctctccggcgcgccg 11325493 Query: 110 cg---ccgccccggggcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctg 166 || |||||||| |||||| | ||||||||| |||||||| ||||||||||||| ||| Sbjct: 11325492 cggcgccgccccgcggcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctc 11325433 Query: 167 agcaaggatgagaaggagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgc 226 | |||||| ||| |||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 11325432 accaaggaggagcgggagcgggagcggatgtgccagctgttcgacgaggcctccgagcgc 11325373 Query: 227 tgccgcactgcgcccatggagggcatcaccttctcgcccgaggacctcgaatccgccgtc 286 |||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct: 11325372 tgccgcaccgcgcccatggagggcgtctccttctcgcccgaggacctcgactccgccgtc 11325313 Query: 287 gagaccaccgacatcgacactgacattggctcactc 322 ||| |||||||||||||||| || || ||||||||| Sbjct: 11325312 gagtccaccgacatcgacaccgatatcggctcactc 11325277 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 323 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 382 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 11323596 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 11323537 Query: 383 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 442 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 11323536 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 11323477 Query: 443 gcaggcatcc 452 ||||| |||| Sbjct: 11323476 gcagggatcc 11323467
>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0005J15, complete sequence Length = 159270 Score = 281 bits (142), Expect = 1e-72 Identities = 243/276 (88%), Gaps = 3/276 (1%) Strand = Plus / Minus Query: 50 atggcgtccttggtccagcacgtcgcagggctcgcgtgcccaccgctctccggcgcgtcg 109 ||||||||| ||| ||||||||||| ||||| ||| |||| ||||||||||||||| || Sbjct: 37086 atggcgtccctggcgcagcacgtcgcggggctggcgagcccgccgctctccggcgcgccg 37027 Query: 110 cg---ccgccccggggcgccgatgcggccgtccgcgctggtctgcgggacgtacgtgctg 166 || |||||||| |||||| | ||||||||| |||||||| ||||||||||||| ||| Sbjct: 37026 cggcgccgccccgcggcgcccacgcggccgtcggcgctggtgtgcgggacgtacgcgctc 36967 Query: 167 agcaaggatgagaaggagcgggagcggatgcgcacgctgttcgacgaggcctccgagcgc 226 | |||||| ||| |||||||||||||||| || ||||||||||||||||||||||||| Sbjct: 36966 accaaggaggagcgggagcgggagcggatgtgccagctgttcgacgaggcctccgagcgc 36907 Query: 227 tgccgcactgcgcccatggagggcatcaccttctcgcccgaggacctcgaatccgccgtc 286 |||||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct: 36906 tgccgcaccgcgcccatggagggcgtctccttctcgcccgaggacctcgactccgccgtc 36847 Query: 287 gagaccaccgacatcgacactgacattggctcactc 322 ||| |||||||||||||||| || || ||||||||| Sbjct: 36846 gagtccaccgacatcgacaccgatatcggctcactc 36811 Score = 131 bits (66), Expect = 2e-27 Identities = 114/130 (87%) Strand = Plus / Minus Query: 323 attaaagggacagtattcatgaccacttcaaatggtgcatttattgacattcaatcaaag 382 |||||||| ||||| ||||||||||||||||||||||||| | |||| || ||||| ||| Sbjct: 35130 attaaaggaacagtgttcatgaccacttcaaatggtgcatatgttgatatccaatcgaag 35071 Query: 383 gctactgctttcttgcctatagatgaggcatgccttcttgatattgaccatatagaggag 442 ||||||||||||||||| | ||||||||||||||||| ||| | |||||||||| ||| Sbjct: 35070 tctactgctttcttgcctttggatgaggcatgccttctcgatgtcaaccatatagaagag 35011 Query: 443 gcaggcatcc 452 ||||| |||| Sbjct: 35010 gcagggatcc 35001
>ref|NM_005990.2| Homo sapiens serine/threonine kinase 10 (STK10), mRNA Length = 4398 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 162 tgctgagcaaggatgagaaggagcgggagcggatgc 197 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2532 tgctgcgcaagcatgagaaggagcgggagcagatgc 2567
>gb|AC141898.3| Mus musculus BAC clone RP23-155I18 from chromosome 5, complete sequence Length = 232201 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Minus Query: 29 agcgagcagaggcagaagaggatggcgt 56 |||||||||||||||| ||||||||||| Sbjct: 9702 agcgagcagaggcagatgaggatggcgt 9675
>gb|BC070077.1| Homo sapiens serine/threonine kinase 10, mRNA (cDNA clone MGC:87394 IMAGE:5267449), complete cds Length = 4398 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 162 tgctgagcaaggatgagaaggagcgggagcggatgc 197 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2532 tgctgcgcaagcatgagaaggagcgggagcagatgc 2567
>dbj|AK022960.1| Homo sapiens cDNA FLJ12898 fis, clone NT2RP2004239, highly similar to Homo sapiens lok mRNA for protein kinase Length = 3044 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 162 tgctgagcaaggatgagaaggagcgggagcggatgc 197 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 1191 tgctgcgcaagcatgagaaggagcgggagcagatgc 1226
>gb|AY335689.1| Synthetic construct Homo sapiens serine/threonine kinase 10 (STK10) mRNA, partial cds Length = 2907 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 162 tgctgagcaaggatgagaaggagcgggagcggatgc 197 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2318 tgctgcgcaagcatgagaaggagcgggagcagatgc 2353
>gb|AC122871.4| Mus musculus BAC clone RP23-107P12 from 5, complete sequence Length = 213939 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 29 agcgagcagaggcagaagaggatggcgt 56 |||||||||||||||| ||||||||||| Sbjct: 42526 agcgagcagaggcagatgaggatggcgt 42553
>dbj|AB015718.1| Homo sapiens lok mRNA for protein kinase, complete cds Length = 4221 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 162 tgctgagcaaggatgagaaggagcgggagcggatgc 197 ||||| ||||| |||||||||||||||||| ||||| Sbjct: 2368 tgctgcgcaagcatgagaaggagcgggagcagatgc 2403
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.099 Identities = 23/23 (100%) Strand = Plus / Minus Query: 180 aggagcgggagcggatgcgcacg 202 ||||||||||||||||||||||| Sbjct: 4662991 aggagcgggagcggatgcgcacg 4662969
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 cgccgatgcggccgtccgcgct 144 |||||||||||||||||||||| Sbjct: 43188 cgccgatgcggccgtccgcgct 43209
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 cgccgatgcggccgtccgcgct 144 |||||||||||||||||||||| Sbjct: 847033 cgccgatgcggccgtccgcgct 847054
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 cgccgatgcggccgtccgcgct 144 |||||||||||||||||||||| Sbjct: 689449 cgccgatgcggccgtccgcgct 689470
>emb|AL845493.5| Zebrafish DNA sequence from clone DKEYP-77C8 in linkage group 20, complete sequence Length = 176916 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 252 tcaccttctcgcccgaggacct 273 |||||||||||||||||||||| Sbjct: 22783 tcaccttctcgcccgaggacct 22762
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 cgccgatgcggccgtccgcgct 144 |||||||||||||||||||||| Sbjct: 597928 cgccgatgcggccgtccgcgct 597949
>gb|AC095491.7| Rattus norvegicus 4 BAC CH230-7L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 293757 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 cttcttgatattgaccatata 436 ||||||||||||||||||||| Sbjct: 31690 cttcttgatattgaccatata 31710
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 gatgcggccgtccgcgctggt 147 ||||||||||||||||||||| Sbjct: 29672 gatgcggccgtccgcgctggt 29652
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 117 ccggggcgccgatgcggccgt 137 ||||||||||||||||||||| Sbjct: 673844 ccggggcgccgatgcggccgt 673824 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 100 cggcgcgtcgcgccgccccggggcgccg 127 ||||||| |||||||| ||||||||||| Sbjct: 1486342 cggcgcgccgcgccgcgccggggcgccg 1486315
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 tcaaaggctactgctttcttg 397 ||||||||||||||||||||| Sbjct: 17984800 tcaaaggctactgctttcttg 17984820 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tgagcaaggatgagaaggag 184 |||||||||||||||||||| Sbjct: 12646425 tgagcaaggatgagaaggag 12646444
>dbj|AP005929.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0071G09 Length = 169148 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 377 tcaaaggctactgctttcttg 397 ||||||||||||||||||||| Sbjct: 51106 tcaaaggctactgctttcttg 51126
>emb|BX296546.6| Zebrafish DNA sequence from clone CH211-234P1 in linkage group 4, complete sequence Length = 174235 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 ctcactcattaaagggacagt 336 ||||||||||||||||||||| Sbjct: 97415 ctcactcattaaagggacagt 97435
>emb|CT025691.7| Zebrafish DNA sequence from clone CH211-206I4 in linkage group 4, complete sequence Length = 68685 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 ctcactcattaaagggacagt 336 ||||||||||||||||||||| Sbjct: 16563 ctcactcattaaagggacagt 16583
>gb|AC103621.6| Mus musculus chromosome 5, clone RP24-230J14, complete sequence Length = 169247 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 cagaggcagaagaggatggc 54 |||||||||||||||||||| Sbjct: 94117 cagaggcagaagaggatggc 94098
>gb|AC102231.12| Mus musculus chromosome 18, clone RP24-76A21, complete sequence Length = 174136 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 caaggatgagaaggagcggg 188 |||||||||||||||||||| Sbjct: 33703 caaggatgagaaggagcggg 33684
>ref|XM_369660.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05804.4) partial mRNA Length = 2574 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 agcgagcagaggcagaagag 48 |||||||||||||||||||| Sbjct: 1601 agcgagcagaggcagaagag 1620
>ref|XM_604746.2| PREDICTED: Bos taurus similar to Serine/threonine-protein kinase 10 (Lymphocyte-oriented kinase) (LOC526376), partial mRNA Length = 4672 Score = 40.1 bits (20), Expect = 6.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 162 tgctgagcaaggatgagaaggagcgggagcggatgc 197 ||||| ||||| ||||||||||||| |||| ||||| Sbjct: 1777 tgctgcgcaagcatgagaaggagcgcgagcagatgc 1812
>gb|BC023108.1| Mus musculus leukocyte receptor cluster (LRC) member 1, mRNA (cDNA clone MGC:28381 IMAGE:4021762), complete cds Length = 2288 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 aggatgagaaggagcgggagcgga 194 |||| ||||||||||||||||||| Sbjct: 479 aggaggagaaggagcgggagcgga 502
>gb|AC140387.2| Mus musculus BAC clone RP24-185D21 from chromosome 9, complete sequence Length = 158741 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atctgcctgttcctcattgg 20 |||||||||||||||||||| Sbjct: 100396 atctgcctgttcctcattgg 100377
>ref|XM_748288.1| Aspergillus fumigatus Af293 ABC transporter (Afu5g12720) partial mRNA Length = 4296 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cgccgtcgagaccaccgaca 299 |||||||||||||||||||| Sbjct: 321 cgccgtcgagaccaccgaca 302
>ref|XM_846392.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 2 (LOC479515), mRNA Length = 7723 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gagaaggagcgggagcggat 195 |||||||||||||||||||| Sbjct: 5457 gagaaggagcgggagcggat 5476
>ref|XM_858727.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 7 (LOC479515), mRNA Length = 7253 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gagaaggagcgggagcggat 195 |||||||||||||||||||| Sbjct: 5457 gagaaggagcgggagcggat 5476
>ref|XM_858702.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 6 (LOC479515), mRNA Length = 7032 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gagaaggagcgggagcggat 195 |||||||||||||||||||| Sbjct: 4879 gagaaggagcgggagcggat 4898
>ref|XM_536653.2| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 1 (LOC479515), mRNA Length = 8332 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gagaaggagcgggagcggat 195 |||||||||||||||||||| Sbjct: 5457 gagaaggagcgggagcggat 5476
>ref|XM_858611.1| PREDICTED: Canis familiaris similar to nuclear receptor co-repressor 1, transcript variant 3 (LOC479515), mRNA Length = 7675 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 gagaaggagcgggagcggat 195 |||||||||||||||||||| Sbjct: 5409 gagaaggagcgggagcggat 5428
>emb|AL139182.24| Human DNA sequence from clone RP11-278A16 on chromosome 13 Contains a proteasome (prosome, macropain) activator subunit 2 (PA28 beta) (PSME2) pseudogene, complete sequence Length = 133202 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 gacatcgacactgacattgg 315 |||||||||||||||||||| Sbjct: 38357 gacatcgacactgacattgg 38376
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 gatgcgcacgctgttcgacg 212 |||||||||||||||||||| Sbjct: 2448205 gatgcgcacgctgttcgacg 2448224 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gccgatgcggccgtccgcgc 143 |||||||||||||||||||| Sbjct: 255402 gccgatgcggccgtccgcgc 255383
>emb|CR626905.5| Zebrafish DNA sequence from clone DKEY-85H21 in linkage group 15, complete sequence Length = 201465 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 agatgaggcatgccttcttgatat 426 |||||||| ||||||||||||||| Sbjct: 158662 agatgaggaatgccttcttgatat 158685
>gb|AC130680.13| Mus musculus chromosome 7, clone RP23-180G17, complete sequence Length = 136680 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 aggatgagaaggagcgggagcgga 194 |||| ||||||||||||||||||| Sbjct: 82294 aggaggagaaggagcgggagcgga 82271
>gb|AE005806.1| Caulobacter crescentus CB15 section 132 of 359 of the complete genome Length = 10111 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 cttctcgcccgaggacctcg 275 |||||||||||||||||||| Sbjct: 1548 cttctcgcccgaggacctcg 1567
>ref|NM_027203.2| Mus musculus leukocyte receptor cluster (LRC) member 1 (Leng1), mRNA Length = 2288 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 aggatgagaaggagcgggagcgga 194 |||| ||||||||||||||||||| Sbjct: 479 aggaggagaaggagcgggagcgga 502
>gb|AF176914.5| Oryctolagus cuniculus hypoxia-induced corneal CYP4B1-like isozyme mRNA short form, complete cds Length = 1818 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 aggatgagaaggagcgggag 190 |||||||||||||||||||| Sbjct: 824 aggatgagaaggagcgggag 843
>gb|AF332576.4| Oryctolagus cuniculus CYP4B1 isoform mRNA long form, complete cds Length = 2034 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 aggatgagaaggagcgggag 190 |||||||||||||||||||| Sbjct: 824 aggatgagaaggagcgggag 843
>gb|AC026199.6| Homo sapiens chromosome 3 clone RP11-507D6 map 3p, complete sequence Length = 201531 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 418 tcttgatattgaccatatagagga 441 |||||||||| ||||||||||||| Sbjct: 13983 tcttgatattcaccatatagagga 13960
>dbj|AK005095.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500001K17 product:similar to LENG1 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 868 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 aggatgagaaggagcgggagcgga 194 |||| ||||||||||||||||||| Sbjct: 110 aggaggagaaggagcgggagcgga 133
>dbj|AK037634.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130030P06 product:similar to LENG1 PROTEIN (FRAGMENT) [Homo sapiens], full insert sequence Length = 1871 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 aggatgagaaggagcgggagcgga 194 |||| ||||||||||||||||||| Sbjct: 126 aggaggagaaggagcgggagcgga 149
>dbj|AK020854.1| Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930014D07 product:unclassifiable, full insert sequence Length = 974 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 tattcatgaccacttcaaat 355 |||||||||||||||||||| Sbjct: 356 tattcatgaccacttcaaat 375
>gb|AC069247.5|AC069247 Homo sapiens chromosome 3 clone RP11-489O22 map 3p, complete sequence Length = 180234 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 tcttgatattgaccatatagagga 441 |||||||||| ||||||||||||| Sbjct: 117044 tcttgatattcaccatatagagga 117067
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 cgcgccgccccggggcgccg 127 |||||||||||||||||||| Sbjct: 952139 cgcgccgccccggggcgccg 952158
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tgagcaaggatgagaaggag 184 |||||||||||||||||||| Sbjct: 128738 tgagcaaggatgagaaggag 128757
>dbj|AK068142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134C08, full insert sequence Length = 1180 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 tgagcaaggatgagaaggag 184 |||||||||||||||||||| Sbjct: 787 tgagcaaggatgagaaggag 806
>gb|AC171680.5| Mus musculus chromosome 7, clone RP23-146B24, complete sequence Length = 200031 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 171 aggatgagaaggagcgggagcgga 194 |||| ||||||||||||||||||| Sbjct: 78695 aggaggagaaggagcgggagcgga 78672
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 ggtccagcacgtcgcagggctcgc 84 |||||||||||| ||||||||||| Sbjct: 4261631 ggtccagcacgtagcagggctcgc 4261654
>gb|U33472.1|RNU33472 Rattus norvegicus type 1 astrocyte and olfactory-limbic associated protein AT1-46 mRNA, complete cds Length = 4301 Score = 40.1 bits (20), Expect = 6.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 162 tgctgagcaaggatgagaaggagcgggagcggatgc 197 ||||| ||||| | |||||||||||||||| ||||| Sbjct: 1615 tgctgcgcaagcacgagaaggagcgggagcagatgc 1650
>gb|AC127583.4| Mus musculus BAC clone RP24-121M11 from 13, complete sequence Length = 152618 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 tattcatgaccacttcaaat 355 |||||||||||||||||||| Sbjct: 107841 tattcatgaccacttcaaat 107822
>gb|AC066585.6| Homo sapiens chromosome 3 clone RP11-24B16 map 3p, complete sequence Length = 134862 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 418 tcttgatattgaccatatagagga 441 |||||||||| ||||||||||||| Sbjct: 56714 tcttgatattcaccatatagagga 56737
>gb|M29852.1|RABCY450DA Rabbit cytochrome P-450 isozyme 5 (P450 IVB1) mRNA, complete cds Length = 2025 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 aggatgagaaggagcgggag 190 |||||||||||||||||||| Sbjct: 815 aggatgagaaggagcgggag 834 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,337,039 Number of Sequences: 3902068 Number of extensions: 3337039 Number of successful extensions: 69478 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68195 Number of HSP's gapped (non-prelim): 1274 length of query: 452 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 430 effective length of database: 17,147,199,772 effective search space: 7373295901960 effective search space used: 7373295901960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)