ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet31e01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061122.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-G04, full insert sequence Length = 1666 Score = 349 bits (176), Expect = 4e-93 Identities = 314/360 (87%) Strand = Plus / Plus Query: 1 cgccgcctccggcgggacgcccaccggccgcttcaccaacggcaggaccatcgccgacat 60 ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 354 cgccgcctccggcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacat 413 Query: 61 cataggggagatgctgggccaggcggactactcgccgccgttcctggcgccgaacacgac 120 ||| || || ||| |||||||| |||||||||||||||||||||| || ||||||||||| Sbjct: 414 catcggagaaatgttgggccagacggactactcgccgccgttcctcgccccgaacacgac 473 Query: 121 gggcggcgcgctgctcaacggcgtgaactacgcgtccggcggcgccgggatactgaacgg 180 ||||||||||||||||||||||| ||||||||||| || ||||||||||| || ||||| Sbjct: 474 cggcggcgcgctgctcaacggcgtcaactacgcgtcaggaggcgccgggattctcaacgg 533 Query: 181 gacgggcagggtgttcgtgaaccggatcggcatggacgtgcaggtggactacttcaacat 240 || || || | || |||||| ||||||| ||||| | |||||||| ||||||||||| Sbjct: 534 cacaggaagaatctttgtgaacaggatcggaatggatcttcaggtggattacttcaacat 593 Query: 241 cacgcggcggcagctggacggcctgctgggcgaggacaaggcgagggagttcatccacaa 300 |||| || ||||||||||| || ||||| ||| ||||||| ||||||| | | || Sbjct: 594 cacgaggaagcagctggacgatctcctggggaaggcgaaggcgaaggagttcttgaagaa 653 Query: 301 gaaggccatcttctccatcaccgtcgggtccaacgactttctcaacaactacctgatgcc 360 ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 654 gaaggccatcttctccatcaccgtcgggtccaacgacttcctcaacaactacctcatgcc 713
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 143 bits (72), Expect = 5e-31 Identities = 141/164 (85%) Strand = Plus / Minus Query: 197 gtgaaccggatcggcatggacgtgcaggtggactacttcaacatcacgcggcggcagctg 256 |||||| ||||||| ||||| | |||||||| ||||||||||||||| || ||||||| Sbjct: 28170556 gtgaacaggatcggaatggatcttcaggtggattacttcaacatcacgaggaagcagctg 28170497 Query: 257 gacggcctgctgggcgaggacaaggcgagggagttcatccacaagaaggccatcttctcc 316 |||| || ||||| ||| ||||||| ||||||| | | |||||||||||||||||| Sbjct: 28170496 gacgatctcctggggaaggcgaaggcgaaggagttcttgaagaagaaggccatcttctcc 28170437 Query: 317 atcaccgtcgggtccaacgactttctcaacaactacctgatgcc 360 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 28170436 atcaccgtcgggtccaacgacttcctcaacaactacctcatgcc 28170393 Score = 139 bits (70), Expect = 7e-30 Identities = 97/106 (91%) Strand = Plus / Minus Query: 75 tgggccaggcggactactcgccgccgttcctggcgccgaacacgacgggcggcgcgctgc 134 |||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct: 28170801 tgggccagacggactactcgccgccgttcctcgccccgaacacgaccggcggcgcgctgc 28170742 Query: 135 tcaacggcgtgaactacgcgtccggcggcgccgggatactgaacgg 180 |||||||||| ||||||||||| || ||||||||||| || ||||| Sbjct: 28170741 tcaacggcgtcaactacgcgtcaggaggcgccgggattctcaacgg 28170696 Score = 101 bits (51), Expect = 2e-18 Identities = 60/63 (95%) Strand = Plus / Minus Query: 1 cgccgcctccggcgggacgcccaccggccgcttcaccaacggcaggaccatcgccgacat 60 ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 28170966 cgccgcctccggcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacat 28170907 Query: 61 cat 63 ||| Sbjct: 28170906 cat 28170904
>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0625E02 Length = 153921 Score = 143 bits (72), Expect = 5e-31 Identities = 141/164 (85%) Strand = Plus / Minus Query: 197 gtgaaccggatcggcatggacgtgcaggtggactacttcaacatcacgcggcggcagctg 256 |||||| ||||||| ||||| | |||||||| ||||||||||||||| || ||||||| Sbjct: 26101 gtgaacaggatcggaatggatcttcaggtggattacttcaacatcacgaggaagcagctg 26042 Query: 257 gacggcctgctgggcgaggacaaggcgagggagttcatccacaagaaggccatcttctcc 316 |||| || ||||| ||| ||||||| ||||||| | | |||||||||||||||||| Sbjct: 26041 gacgatctcctggggaaggcgaaggcgaaggagttcttgaagaagaaggccatcttctcc 25982 Query: 317 atcaccgtcgggtccaacgactttctcaacaactacctgatgcc 360 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 25981 atcaccgtcgggtccaacgacttcctcaacaactacctcatgcc 25938 Score = 139 bits (70), Expect = 7e-30 Identities = 97/106 (91%) Strand = Plus / Minus Query: 75 tgggccaggcggactactcgccgccgttcctggcgccgaacacgacgggcggcgcgctgc 134 |||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct: 26346 tgggccagacggactactcgccgccgttcctcgccccgaacacgaccggcggcgcgctgc 26287 Query: 135 tcaacggcgtgaactacgcgtccggcggcgccgggatactgaacgg 180 |||||||||| ||||||||||| || ||||||||||| || ||||| Sbjct: 26286 tcaacggcgtcaactacgcgtcaggaggcgccgggattctcaacgg 26241 Score = 101 bits (51), Expect = 2e-18 Identities = 60/63 (95%) Strand = Plus / Minus Query: 1 cgccgcctccggcgggacgcccaccggccgcttcaccaacggcaggaccatcgccgacat 60 ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 26511 cgccgcctccggcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacat 26452 Query: 61 cat 63 ||| Sbjct: 26451 cat 26449
>dbj|AP004274.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0450A04 Length = 162545 Score = 143 bits (72), Expect = 5e-31 Identities = 141/164 (85%) Strand = Plus / Minus Query: 197 gtgaaccggatcggcatggacgtgcaggtggactacttcaacatcacgcggcggcagctg 256 |||||| ||||||| ||||| | |||||||| ||||||||||||||| || ||||||| Sbjct: 153852 gtgaacaggatcggaatggatcttcaggtggattacttcaacatcacgaggaagcagctg 153793 Query: 257 gacggcctgctgggcgaggacaaggcgagggagttcatccacaagaaggccatcttctcc 316 |||| || ||||| ||| ||||||| ||||||| | | |||||||||||||||||| Sbjct: 153792 gacgatctcctggggaaggcgaaggcgaaggagttcttgaagaagaaggccatcttctcc 153733 Query: 317 atcaccgtcgggtccaacgactttctcaacaactacctgatgcc 360 ||||||||||||||||||||||| |||||||||||||| ||||| Sbjct: 153732 atcaccgtcgggtccaacgacttcctcaacaactacctcatgcc 153689 Score = 139 bits (70), Expect = 7e-30 Identities = 97/106 (91%) Strand = Plus / Minus Query: 75 tgggccaggcggactactcgccgccgttcctggcgccgaacacgacgggcggcgcgctgc 134 |||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct: 154097 tgggccagacggactactcgccgccgttcctcgccccgaacacgaccggcggcgcgctgc 154038 Query: 135 tcaacggcgtgaactacgcgtccggcggcgccgggatactgaacgg 180 |||||||||| ||||||||||| || ||||||||||| || ||||| Sbjct: 154037 tcaacggcgtcaactacgcgtcaggaggcgccgggattctcaacgg 153992 Score = 101 bits (51), Expect = 2e-18 Identities = 60/63 (95%) Strand = Plus / Minus Query: 1 cgccgcctccggcgggacgcccaccggccgcttcaccaacggcaggaccatcgccgacat 60 ||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| Sbjct: 154262 cgccgcctccggcggcatgcccaccggccgcttcaccaacggccggaccatcgccgacat 154203 Query: 61 cat 63 ||| Sbjct: 154202 cat 154200
>ref|XM_467638.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1074 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Plus Query: 139 cggcgtgaactacgcgtccggcggcgccgggatactgaacgggacgggc 187 |||||| |||| |||||||||||||||||| || ||||||| ||||||| Sbjct: 324 cggcgtcaacttcgcgtccggcggcgccggcattctgaacgagacgggc 372
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 139 cggcgtgaactacgcgtccggcggcgccgggatactgaacgggacgggc 187 |||||| |||| |||||||||||||||||| || ||||||| ||||||| Sbjct: 30574334 cggcgtcaacttcgcgtccggcggcgccggcattctgaacgagacgggc 30574286
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 139 cggcgtgaactacgcgtccggcggcgccgggatactgaacgggacgggc 187 |||||| |||| |||||||||||||||||| || ||||||| ||||||| Sbjct: 86342 cggcgtcaacttcgcgtccggcggcgccggcattctgaacgagacgggc 86294
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggcaggaccatcgccgacatcat 63 |||||||| || |||||||| ||||||||||||| |||||||| Sbjct: 8247984 cccaccgggcggttcaccaatggcaggaccatcggggacatcat 8248027 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 139 cggcgtgaactacgcgtccggcggcgccgg 168 |||||| |||| |||||||||||||||||| Sbjct: 8248188 cggcgtcaacttcgcgtccggcggcgccgg 8248217
>dbj|AP005619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0624H09 Length = 158719 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggcaggaccatcgccgacatcat 63 |||||||| || |||||||| ||||||||||||| |||||||| Sbjct: 140347 cccaccgggcggttcaccaatggcaggaccatcggggacatcat 140390 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 139 cggcgtgaactacgcgtccggcggcgccgg 168 |||||| |||| |||||||||||||||||| Sbjct: 140551 cggcgtcaacttcgcgtccggcggcgccgg 140580
>dbj|AP005527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0603C10 Length = 187620 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggcaggaccatcgccgacatcat 63 |||||||| || |||||||| ||||||||||||| |||||||| Sbjct: 41489 cccaccgggcggttcaccaatggcaggaccatcggggacatcat 41532 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 139 cggcgtgaactacgcgtccggcggcgccgg 168 |||||| |||| |||||||||||||||||| Sbjct: 41693 cggcgtcaacttcgcgtccggcggcgccgg 41722
>dbj|AK108686.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-149-C04, full insert sequence Length = 1426 Score = 48.1 bits (24), Expect = 0.020 Identities = 39/44 (88%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggcaggaccatcgccgacatcat 63 |||||||| || |||||||| ||||||||||||| |||||||| Sbjct: 266 cccaccgggcggttcaccaatggcaggaccatcggggacatcat 309 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 139 cggcgtgaactacgcgtccggcggcgccgg 168 |||||| |||| |||||||||||||||||| Sbjct: 382 cggcgtcaacttcgcgtccggcggcgccgg 411
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 256 ggacggcctgctgggcgaggacaaggcg 283 |||||||||||||||||| ||||||||| Sbjct: 579696 ggacggcctgctgggcgacgacaaggcg 579669
>gb|DQ397604.1| Cenarchaeum symbiosum clone C08G10, complete sequence Length = 37232 Score = 46.1 bits (23), Expect = 0.079 Identities = 26/27 (96%) Strand = Plus / Plus Query: 173 ctgaacgggacgggcagggtgttcgtg 199 |||||||||||||||||||||| |||| Sbjct: 31113 ctgaacgggacgggcagggtgtacgtg 31139
>gb|AC137623.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0426G01, complete sequence Length = 173074 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 331 caacgactttctcaacaactacctgatgcc 360 |||||||| |||||||||||||||||||| Sbjct: 116666 caacgactacctcaacaactacctgatgcc 116695 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 133 gctcaacggcgtgaactacgcgtccggcggcgccgg 168 |||| |||||||||||||||| |||| || |||||| Sbjct: 116315 gctccacggcgtgaactacgcctccgccgccgccgg 116350
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Plus Query: 131 ctgctcaacggcgtgaactacgcgtccggcggcg 164 ||||| || ||||| ||||||||||||||||||| Sbjct: 11033741 ctgcttaagggcgtcaactacgcgtccggcggcg 11033774 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 ccaccggccgcttcaccaacggca 44 ||||||||||||||| |||||||| Sbjct: 21089651 ccaccggccgcttcagcaacggca 21089628
>gb|AF461424.2| Oryza sativa chromosome 3 clone OSJNBa0016B07, complete sequence Length = 167588 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Minus Query: 131 ctgctcaacggcgtgaactacgcgtccggcggcg 164 ||||| || ||||| ||||||||||||||||||| Sbjct: 99381 ctgcttaagggcgtcaactacgcgtccggcggcg 99348
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 331 caacgactttctcaacaactacctgatgcc 360 |||||||| |||||||||||||||||||| Sbjct: 20444921 caacgactacctcaacaactacctgatgcc 20444950 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 133 gctcaacggcgtgaactacgcgtccggcggcgccgg 168 |||| |||||||||||||||| |||| || |||||| Sbjct: 20444570 gctccacggcgtgaactacgcctccgccgccgccgg 20444605
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Plus Query: 131 ctgctcaacggcgtgaactacgcgtccggcggcg 164 ||||| || ||||| ||||||||||||||||||| Sbjct: 11030504 ctgcttaagggcgtcaactacgcgtccggcggcg 11030537 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 ccaccggccgcttcaccaacggca 44 ||||||||||||||| |||||||| Sbjct: 21082680 ccaccggccgcttcagcaacggca 21082657
>gb|AY928088.1| Magnaporthe grisea nonribosomal peptide synthetase 6 (NPS6) gene, partial cds Length = 3292 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 tggacggcctgctgggcgagga 276 |||||||||||||||||||||| Sbjct: 1998 tggacggcctgctgggcgagga 2019
>dbj|AK100958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140K23, full insert sequence Length = 1556 Score = 44.1 bits (22), Expect = 0.31 Identities = 28/30 (93%) Strand = Plus / Plus Query: 331 caacgactttctcaacaactacctgatgcc 360 |||||||| |||||||||||||||||||| Sbjct: 628 caacgactacctcaacaactacctgatgcc 657 Score = 40.1 bits (20), Expect = 4.9 Identities = 32/36 (88%) Strand = Plus / Plus Query: 133 gctcaacggcgtgaactacgcgtccggcggcgccgg 168 |||| |||||||||||||||| |||| || |||||| Sbjct: 424 gctccacggcgtgaactacgcctccgccgccgccgg 459
>dbj|AK060625.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G08, full insert sequence Length = 1443 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Plus Query: 131 ctgctcaacggcgtgaactacgcgtccggcggcg 164 ||||| || ||||| ||||||||||||||||||| Sbjct: 496 ctgcttaagggcgtcaactacgcgtccggcggcg 529
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 44.1 bits (22), Expect = 0.31 Identities = 31/34 (91%) Strand = Plus / Plus Query: 131 ctgctcaacggcgtgaactacgcgtccggcggcg 164 ||||| || ||||| ||||||||||||||||||| Sbjct: 77226 ctgcttaagggcgtcaactacgcgtccggcggcg 77259
>gb|AC121790.2| Mus musculus BAC clone RP23-399J19 from 1, complete sequence Length = 190623 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacatcataggggagatgctg 76 ||||||||||||||||||||| Sbjct: 22565 gacatcataggggagatgctg 22545
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 gcctgctgggcgaggacaagg 281 ||||||||||||||||||||| Sbjct: 146024 gcctgctgggcgaggacaagg 146044
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 gcctgctgggcgaggacaagg 281 ||||||||||||||||||||| Sbjct: 258472 gcctgctgggcgaggacaagg 258492
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 261 gcctgctgggcgaggacaagg 281 ||||||||||||||||||||| Sbjct: 243145 gcctgctgggcgaggacaagg 243165
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 cggcgtgaactacgcgtccgg 159 ||||||||||||||||||||| Sbjct: 2119093 cggcgtgaactacgcgtccgg 2119113
>emb|AL672282.9| Mouse DNA sequence from clone RP23-448K19 on chromosome X, complete sequence Length = 167107 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 336 actttctcaacaactacctga 356 ||||||||||||||||||||| Sbjct: 44523 actttctcaacaactacctga 44503
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 337 ctttctcaacaactacctgat 357 ||||||||||||||||||||| Sbjct: 3522056 ctttctcaacaactacctgat 3522076
>gb|AC147128.3| Mus musculus BAC clone RP24-178K6 from 1, complete sequence Length = 158485 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 gacatcataggggagatgctg 76 ||||||||||||||||||||| Sbjct: 54229 gacatcataggggagatgctg 54209
>emb|AL731851.13| Mouse DNA sequence from clone RP23-362N19 on chromosome 2, complete sequence Length = 207372 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 347 aactacctgatgccggtgctg 367 ||||||||||||||||||||| Sbjct: 165057 aactacctgatgccggtgctg 165037
>ref|NM_188436.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1095 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||| |||||||||| Sbjct: 205 cccaccggccgctgcaccaacggc 228
>ref|XM_463028.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 ccaccggccgcttcaccaacggca 44 ||||||||||||||| |||||||| Sbjct: 206 ccaccggccgcttcagcaacggca 229
>ref|NM_192238.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1281 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gcggcagctggacggcctgc 266 |||||||||||||||||||| Sbjct: 605 gcggcagctggacggcctgc 624
>gb|BT018449.1| Zea mays clone EL01N0407B08.d mRNA sequence Length = 1302 Score = 40.1 bits (20), Expect = 4.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Plus Query: 138 acggcgtgaactacgcgtccggcggcgccggg 169 |||||||||||||||||| |||||||| |||| Sbjct: 268 acggcgtgaactacgcgt-cggcggcggcggg 298 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 153 cccaccggccgcttctccaacggc 176
>ref|XM_584953.2| PREDICTED: Bos taurus similar to LATS, large tumor suppressor, homolog 2 (LOC508208), mRNA Length = 4240 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 gccgccgttcctggcgccga 113 |||||||||||||||||||| Sbjct: 2022 gccgccgttcctggcgccga 2041
>emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 24 Length = 199362 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 catcttctccatcaccgtcgggtc 330 ||||||||||||||||||| |||| Sbjct: 173453 catcttctccatcaccgtctggtc 173430
>emb|AL161813.1|ATT32A17 Arabidopsis thaliana DNA chromosome 4, BAC clone T32A17 (ESSA project) Length = 104386 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 catcttctccatcaccgtcgggtc 330 ||||||||||||||||||| |||| Sbjct: 49181 catcttctccatcaccgtctggtc 49158
>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence Length = 250948 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 accaacggcaggaccatcgc 54 |||||||||||||||||||| Sbjct: 245205 accaacggcaggaccatcgc 245186
>gb|AC128645.5| Oryza sativa chromosome 3 BAC OSJNBb0016P23 genomic sequence, complete sequence Length = 131250 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 ccaccggccgcttcaccaacggca 44 ||||||||||||||| |||||||| Sbjct: 67407 ccaccggccgcttcagcaacggca 67384
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 20970919 cccaccggccgcttctccaacggc 20970896 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 2448642 cccaccggccgcttctccaacggc 2448665
>gb|AC109490.3| Homo sapiens chromosome 16 clone RP11-65B9, complete sequence Length = 161024 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 acgactttctcaacaactac 352 |||||||||||||||||||| Sbjct: 140609 acgactttctcaacaactac 140590
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gcggcagctggacggcctgc 266 |||||||||||||||||||| Sbjct: 29196342 gcggcagctggacggcctgc 29196323 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||| |||||||||| Sbjct: 6266764 cccaccggccgctgcaccaacggc 6266787
>gb|AC116553.2| Homo sapiens chromosome 16 clone RP11-43P5, complete sequence Length = 173692 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 acgactttctcaacaactac 352 |||||||||||||||||||| Sbjct: 24817 acgactttctcaacaactac 24798
>gb|AE004776.1| Pseudomonas aeruginosa PAO1, section 337 of 529 of the complete genome Length = 11673 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 gacggcctgctgggcgagga 276 |||||||||||||||||||| Sbjct: 5359 gacggcctgctgggcgagga 5340
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gcggcagctggacggcctgc 266 |||||||||||||||||||| Sbjct: 156708 gcggcagctggacggcctgc 156689
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gcggcagctggacggcctgc 266 |||||||||||||||||||| Sbjct: 42129 gcggcagctggacggcctgc 42110
>dbj|AP003104.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0038J17 Length = 180186 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||| |||||||||| Sbjct: 128962 cccaccggccgctgcaccaacggc 128985
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||| |||||||||| Sbjct: 37830 cccaccggccgctgcaccaacggc 37853
>dbj|AP005894.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23 Length = 159792 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 127052 cccaccggccgcttctccaacggc 127075
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 35232 cccaccggccgcttctccaacggc 35255
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 63008 cccaccggccgcttctccaacggc 62985
>dbj|AK112006.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-B09, full insert sequence Length = 1300 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 253 cccaccggccgcttctccaacggc 276
>dbj|AK111927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-C10, full insert sequence Length = 1463 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 277 cccaccggccgcttctccaacggc 300
>dbj|AK105422.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-B12, full insert sequence Length = 1772 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||| |||||||||| Sbjct: 632 cccaccggccgctgcaccaacggc 655
>dbj|AK103614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133K20, full insert sequence Length = 1416 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||| |||||||||| Sbjct: 327 cccaccggccgctgcaccaacggc 350
>dbj|AK068954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001I20, full insert sequence Length = 1158 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gcggcagctggacggcctgc 266 |||||||||||||||||||| Sbjct: 277 gcggcagctggacggcctgc 296
>dbj|AK059766.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G04, full insert sequence Length = 1134 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 253 cccaccggccgcttctccaacggc 276
>dbj|AK059484.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-F09, full insert sequence Length = 1326 Score = 40.1 bits (20), Expect = 4.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cccaccggccgcttcaccaacggc 43 ||||||||||||||| |||||||| Sbjct: 256 cccaccggccgcttctccaacggc 279
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 cgaacacgacgggcggcgcg 130 |||||||||||||||||||| Sbjct: 1836896 cgaacacgacgggcggcgcg 1836915 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,319,271 Number of Sequences: 3902068 Number of extensions: 2319271 Number of successful extensions: 53107 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 52277 Number of HSP's gapped (non-prelim): 829 length of query: 368 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 346 effective length of database: 17,147,199,772 effective search space: 5932931121112 effective search space used: 5932931121112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
