ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet31c09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4) mRNA, partial cds; nuclear gene for chloroplast product Length = 687 Score = 561 bits (283), Expect = e-157 Identities = 283/283 (100%) Strand = Plus / Plus Query: 116 tcagcgtcgagcccccggttcctgggcgactccggccgcgtcgggctcgccaagtccacc 175 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tcagcgtcgagcccccggttcctgggcgactccggccgcgtcgggctcgccaagtccacc 60 Query: 176 cgccgcgacgtcgccgtccaggccaaggggtcctggctccccggcctccagtcccctgcc 235 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 cgccgcgacgtcgccgtccaggccaaggggtcctggctccccggcctccagtcccctgcc 120 Query: 236 tacctcgacggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggac 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 tacctcgacggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggac 180 Query: 296 ccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctg 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 ccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctg 240 Query: 356 ggggtggcggggatgctgatcccggaggtgctgaccaaggcgg 398 ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ggggtggcggggatgctgatcccggaggtgctgaccaaggcgg 283
>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley, Prato, mRNA Chloroplast, 939 nt] Length = 939 Score = 454 bits (229), Expect = e-124 Identities = 248/253 (98%), Gaps = 1/253 (0%) Strand = Plus / Plus Query: 147 ccggccgcgtcgggctcgccaag-tccacccgccgcgacgtcgccgtccaggccaagggg 205 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 43 ccggccgcgtcgggctcgccaaggtccacccgccgcgacgtcgccgtccaggccaagggg 102 Query: 206 tcctggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaat 265 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| Sbjct: 103 tcctggctccccggcctccagtcccctgcctacctagacggcagtctggagggtgacaat 162 Query: 266 ggttttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcg 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 ggttttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcg 222 Query: 326 gagctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtg 385 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 223 gacgtggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtg 282 Query: 386 ctgaccaaggcgg 398 ||||||||||||| Sbjct: 283 ctgaccaaggcgg 295
>dbj|AK060222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F08, full insert sequence Length = 1078 Score = 182 bits (92), Expect = 6e-43 Identities = 170/196 (86%) Strand = Plus / Plus Query: 195 aggccaaggggtcctggctccccggcctccagtcccctgcctacctcgacggcagtctgg 254 ||||||||||| |||||||||||||||| || || |||||||| ||||||| || Sbjct: 205 aggccaagggggagtggctccccggcctcccttctcccacctacctcaacggcagcttgc 264 Query: 255 cgggtgacaatggttttgacccgctggcgctggcggaggacccggaggacctgcggtggt 314 | || || || || || |||||| ||| |||||||||||||||||| |||||||||||| Sbjct: 265 caggcgataacgggttcgacccgttgggtctggcggaggacccggagaacctgcggtggt 324 Query: 315 tcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcggggatgctga 374 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 325 tcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgc 384 Query: 375 tcccggaggtgctgac 390 | || ||||||||||| Sbjct: 385 tgcctgaggtgctgac 400
>ref|XM_482572.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1070 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 210 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 269 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 270 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 329 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 330 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 389 Query: 389 ac 390 || Sbjct: 390 ac 391
>ref|XM_507585.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 214 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 273 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 274 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 333 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 334 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 393 Query: 389 ac 390 || Sbjct: 394 ac 395
>ref|XM_507584.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1138 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 214 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 273 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 274 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 333 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 334 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 393 Query: 389 ac 390 || Sbjct: 394 ac 395
>ref|XM_507583.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1178 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 211 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 270 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 271 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 330 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 331 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 390 Query: 389 ac 390 || Sbjct: 391 ac 392
>ref|XM_507582.1| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1188 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 210 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 269 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 270 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 329 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 330 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 389 Query: 389 ac 390 || Sbjct: 390 ac 391
>ref|XM_507239.2| PREDICTED Oryza sativa (japonica cultivar-group), P0413H11.35 mRNA Length = 1191 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 213 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 272 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 273 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 332 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 333 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 392 Query: 389 ac 390 || Sbjct: 393 ac 394
>gb|AY445626.2| Oryza sativa (japonica cultivar-group) chlorophyll a/b binding protein presusor mRNA, complete cds; nuclear gene for chloroplast product Length = 1128 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 190 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 249 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 250 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 309 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 310 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 369 Query: 389 ac 390 || Sbjct: 370 ac 371
>dbj|AK104499.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E04, full insert sequence Length = 1140 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 214 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 273 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 274 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 333 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 334 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 393 Query: 389 ac 390 || Sbjct: 394 ac 395
>dbj|AK104416.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G03, full insert sequence Length = 1177 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 211 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 270 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 271 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 330 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 331 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 390 Query: 389 ac 390 || Sbjct: 391 ac 392
>dbj|AK103921.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B07, full insert sequence Length = 1193 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 215 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 274 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 275 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 334 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 335 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 394 Query: 389 ac 390 || Sbjct: 395 ac 396
>dbj|AK067712.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013120A20, full insert sequence Length = 1138 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 214 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 273 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 274 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 333 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 334 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 393 Query: 389 ac 390 || Sbjct: 394 ac 395
>gb|AF094775.1|AF094775 Oryza sativa chlorophyll a/b-binding protein presursor (Cab27) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1162 Score = 178 bits (90), Expect = 9e-42 Identities = 159/182 (87%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 177 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 236 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 237 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcggag 296 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 297 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 356 Query: 389 ac 390 || Sbjct: 357 ac 358
>ref|XM_482573.1| Oryza sativa (japonica cultivar-group), mRNA Length = 576 Score = 172 bits (87), Expect = 6e-40 Identities = 102/107 (95%) Strand = Plus / Minus Query: 284 ctggcggaggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcgg 343 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 498 ctggcggaggacccggagaacctgcggtggttcgtgcaggcggagctggtgaacgggcgg 439 Query: 344 tgggcgatgctgggggtggcggggatgctgatcccggaggtgctgac 390 |||||||||||||||||||| ||||||||| | || ||||||||||| Sbjct: 438 tgggcgatgctgggggtggccgggatgctgctgcctgaggtgctgac 392
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 172 bits (87), Expect = 6e-40 Identities = 102/107 (95%) Strand = Plus / Minus Query: 284 ctggcggaggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcgg 343 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 21165033 ctggcggaggacccggagaacctgcggtggttcgtgcaggcggagctggtgaacgggcgg 21164974 Query: 344 tgggcgatgctgggggtggcggggatgctgatcccggaggtgctgac 390 |||||||||||||||||||| ||||||||| | || ||||||||||| Sbjct: 21164973 tgggcgatgctgggggtggccgggatgctgctgcctgaggtgctgac 21164927
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 172 bits (87), Expect = 6e-40 Identities = 102/107 (95%) Strand = Plus / Minus Query: 284 ctggcggaggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcgg 343 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 136243 ctggcggaggacccggagaacctgcggtggttcgtgcaggcggagctggtgaacgggcgg 136184 Query: 344 tgggcgatgctgggggtggcggggatgctgatcccggaggtgctgac 390 |||||||||||||||||||| ||||||||| | || ||||||||||| Sbjct: 136183 tgggcgatgctgggggtggccgggatgctgctgcctgaggtgctgac 136137
>dbj|AK067809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121A03, full insert sequence Length = 1190 Score = 170 bits (86), Expect = 2e-39 Identities = 158/182 (86%) Strand = Plus / Plus Query: 209 tggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtgacaatggt 268 |||||||||||||||| || || |||||||| ||||||| || | || || || || Sbjct: 212 tggctccccggcctcccttctcccacctacctcaacggcagcttgccaggcgataacggg 271 Query: 269 tttgacccgctggcgctggcggaggacccggaggacctgcggtggttcgtgcaggcggag 328 || |||||| ||| |||||||||||||||||| |||||||||||||||||||||||| | Sbjct: 272 ttcgacccgttgggtctggcggaggacccggagaacctgcggtggttcgtgcaggcgggg 331 Query: 329 ctggtgaacgggcggtgggcgatgctgggggtggcggggatgctgatcccggaggtgctg 388 ||||||||||||||||||||||||||||||||||| ||||||||| | || ||||||||| Sbjct: 332 ctggtgaacgggcggtgggcgatgctgggggtggccgggatgctgctgcctgaggtgctg 391 Query: 389 ac 390 || Sbjct: 392 ac 393
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 103 bits (52), Expect = 4e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 305 ctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcg 364 ||||||||||||| ||||||||||||| || || | |||||||||||||||| ||||||| Sbjct: 16234223 ctgcggtggttcgcgcaggcggagctgatgcacagccggtgggcgatgctggcggtggcg 16234282 Query: 365 gggatgctgatcccggaggtgctg 388 ||||| ||| |||||||||||||| Sbjct: 16234283 gggatcctggtcccggaggtgctg 16234306
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 103 bits (52), Expect = 4e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 305 ctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcg 364 ||||||||||||| ||||||||||||| || || | |||||||||||||||| ||||||| Sbjct: 50739 ctgcggtggttcgcgcaggcggagctgatgcacagccggtgggcgatgctggcggtggcg 50798 Query: 365 gggatgctgatcccggaggtgctg 388 ||||| ||| |||||||||||||| Sbjct: 50799 gggatcctggtcccggaggtgctg 50822
>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556H01 Length = 149800 Score = 103 bits (52), Expect = 4e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 305 ctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcg 364 ||||||||||||| ||||||||||||| || || | |||||||||||||||| ||||||| Sbjct: 138824 ctgcggtggttcgcgcaggcggagctgatgcacagccggtgggcgatgctggcggtggcg 138883 Query: 365 gggatgctgatcccggaggtgctg 388 ||||| ||| |||||||||||||| Sbjct: 138884 gggatcctggtcccggaggtgctg 138907
>dbj|AK067780.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114F21, full insert sequence Length = 919 Score = 103 bits (52), Expect = 4e-19 Identities = 76/84 (90%) Strand = Plus / Plus Query: 305 ctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcg 364 ||||||||||||| ||||||||||||| || || | |||||||||||||||| ||||||| Sbjct: 346 ctgcggtggttcgcgcaggcggagctgatgcacagccggtgggcgatgctggcggtggcg 405 Query: 365 gggatgctgatcccggaggtgctg 388 ||||| ||| |||||||||||||| Sbjct: 406 gggatcctggtcccggaggtgctg 429
>emb|Z17226.1|PSLHCA411 Pinus sylvestris Lhca4*1-1 gene encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) Length = 1013 Score = 99.6 bits (50), Expect = 7e-18 Identities = 74/82 (90%) Strand = Plus / Plus Query: 311 tggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcggggatg 370 |||| ||| ||||||||||| ||||||||| |||||||||||||||| |||||||||||| Sbjct: 269 tggtacgtccaggcggagctagtgaacgggaggtgggcgatgctgggcgtggcggggatg 328 Query: 371 ctgatcccggaggtgctgacca 392 || |||||||| ||||| |||| Sbjct: 329 cttatcccggaagtgctaacca 350
>emb|Z16409.1|PSLHCA412 P.sylvestris Lhca4*1-2 mRNA encoding Lhca4 protein (type 4 protein of light-harvesting complex of photosystem I) (partial) Length = 968 Score = 91.7 bits (46), Expect = 2e-15 Identities = 73/82 (89%) Strand = Plus / Plus Query: 311 tggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcggggatg 370 |||| ||| ||||||||||| ||||||||| | |||||||||||||| |||||||||||| Sbjct: 246 tggtacgtccaggcggagctagtgaacgggagatgggcgatgctgggcgtggcggggatg 305 Query: 371 ctgatcccggaggtgctgacca 392 || |||||||| ||||| |||| Sbjct: 306 cttatcccggaagtgctaacca 327
>emb|AJ309094.1|PPI309094 Pinus pinaster mRNA for putative chlorophyll a/b-binding protein type 4 Length = 819 Score = 85.7 bits (43), Expect = 1e-13 Identities = 72/82 (87%) Strand = Plus / Plus Query: 311 tggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcggggatg 370 |||| ||| ||||||||||| ||||||||| | |||||||||||||| |||||||||||| Sbjct: 277 tggtacgtccaggcggagctagtgaacgggagatgggcgatgctgggcgtggcggggatg 336 Query: 371 ctgatcccggaggtgctgacca 392 | |||||||| ||||| |||| Sbjct: 337 cntatcccggaagtgctaacca 358
>ref|XM_507384.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1062 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 290 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 349 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 350 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 392
>ref|XM_507383.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1059 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 291 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 350 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 351 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 393
>ref|XM_507382.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1058 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 293 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 352 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 353 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 395
>ref|XM_478841.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1047 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 296 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 355 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 356 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 398
>ref|XM_507381.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1061 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 296 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 355 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 356 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 398
>ref|XM_507380.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1065 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 297 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 356 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 357 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 399
>ref|XM_507379.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1069 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 297 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 356 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 357 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 399
>ref|XM_506426.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1 mRNA Length = 1068 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 300 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 359 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 360 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 402
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 23304695 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 23304754 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 23304755 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 23304797 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgacgtcgccgtccaggcca 200 |||||||||||||||||||| Sbjct: 22389326 cgacgtcgccgtccaggcca 22389307 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 163 cgccaagtccacccgccgcgacgtcgcc 190 ||||||| || ||||||||||||||||| Sbjct: 7637021 cgccaaggccgcccgccgcgacgtcgcc 7637048
>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1065_B06 Length = 113170 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 59953 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 60012 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 60013 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 60055
>dbj|AK119176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F08, full insert sequence Length = 1088 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 311 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 370 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 371 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 413
>dbj|AK104651.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B06, full insert sequence Length = 1069 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 297 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 356 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 357 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 399
>dbj|AK104608.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C01, full insert sequence Length = 1065 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 297 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 356 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 357 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 399
>dbj|AK104283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H09, full insert sequence Length = 1080 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 327 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 386 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 387 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 429
>dbj|AK104177.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D02, full insert sequence Length = 1058 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 293 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 352 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 353 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 395
>dbj|AK104127.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E10, full insert sequence Length = 1061 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 296 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 355 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 356 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 398
>dbj|AK104016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-G05, full insert sequence Length = 1062 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 290 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 349 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 350 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 392
>dbj|AK103966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H03, full insert sequence Length = 1059 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 291 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 350 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 351 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 393
>dbj|AK070051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040A06, full insert sequence Length = 1646 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 478 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 537 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 538 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 580
>dbj|AK060987.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C01, full insert sequence Length = 1068 Score = 77.8 bits (39), Expect = 2e-11 Identities = 87/103 (84%) Strand = Plus / Plus Query: 292 ggacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgat 351 |||||||||| | |||||||| ||||||||||||||||||| || | ||||||||||| Sbjct: 300 ggacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgat 359 Query: 352 gctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 |||||| | |||||| || | ||||||||| | ||||||||| Sbjct: 360 gctgggcgcggcgggcatcttcatcccggagttcctgaccaag 402
>emb|X84308.1|HVLHCA2 H.vulgare mRNA for photosysteme I antenna protein Length = 1050 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 293 gacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatg 352 ||||||||| | |||||||| ||||||||||||||||||| || | |||||||||||| Sbjct: 321 gacccggagagcttgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgatg 380 Query: 353 ctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 ||||| | |||||| || | ||||| ||| ||||||||||| Sbjct: 381 ctgggcgcggcgggcatcttcatcccagagctgctgaccaag 422
>gb|AY105356.1| Zea mays PCO075138 mRNA sequence Length = 1317 Score = 75.8 bits (38), Expect = 1e-10 Identities = 86/102 (84%) Strand = Plus / Plus Query: 293 gacccggaggacctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatg 352 ||||||||| |||||||||| ||||||||||||||||||| || | |||||||||||| Sbjct: 444 gacccggagagcctgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgatg 503 Query: 353 ctgggggtggcggggatgctgatcccggaggtgctgaccaag 394 || || | |||||| || | ||||||||| | ||||||||| Sbjct: 504 ctcggcgcggcgggcatcttcatcccggagtttctgaccaag 545
>emb|X79277.1|LTLHAB L.temulentum lhaB mRNA Length = 1026 Score = 73.8 bits (37), Expect = 4e-10 Identities = 76/89 (85%) Strand = Plus / Plus Query: 306 tgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcgg 365 |||||||| ||||||||||||||||||| || | |||||||||||||| || | ||||| Sbjct: 290 tgcggtggaacgtgcaggcggagctggtgcactgccggtgggcgatgcttggagcggcgg 349 Query: 366 ggatgctgatcccggaggtgctgaccaag 394 |||| | ||||||||| | ||||||||| Sbjct: 350 ggatcttcatcccggagctcctgaccaag 378
>emb|X57707.1|LECAB12 L.esculentum DNA for Cab12 gene Length = 1493 Score = 61.9 bits (31), Expect = 1e-06 Identities = 100/123 (81%) Strand = Plus / Plus Query: 248 agtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggaggacctg 307 ||||| |||||||||||||||||||| || ||| || |||||||| |||||| || || Sbjct: 608 agtcttgcgggtgacaatggttttgatccattgggactcgcggaggatccggagaacttg 667 Query: 308 cggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcgggg 367 | ||||| || ||||| ||||| |||||||| || ||||| ||| |||| || || ||| Sbjct: 668 agatggtttgttcaggctgagctagtgaacggtcgatgggctatgttgggtgttgcaggg 727 Query: 368 atg 370 ||| Sbjct: 728 atg 730
>ref|NM_114615.3| Arabidopsis thaliana CAB4; chlorophyll binding AT3G47470 (CAB4) mRNA, complete cds Length = 1266 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 464 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 523 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 524 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 583 Query: 364 ggggatgct 372 |||||||| Sbjct: 584 tgggatgct 592
>gb|BT000093.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 891 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 204 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 263 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 264 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 323 Query: 364 ggggatgct 372 |||||||| Sbjct: 324 tgggatgct 332
>gb|AY093080.1| Arabidopsis thaliana chlorophyll A-B binding protein 4 precursor homolog (At3g47470) mRNA, complete cds Length = 1055 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 304 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 363 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 364 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 423 Query: 364 ggggatgct 372 |||||||| Sbjct: 424 tgggatgct 432
>emb|BX826089.1|CNS0A6C9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZA10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 973 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 294 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 353 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 354 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 413 Query: 364 ggggatgct 372 |||||||| Sbjct: 414 tgggatgct 422
>emb|BX825536.1|CNS0A6EC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL42ZH07 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1035 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 291 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 350 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 351 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 410 Query: 364 ggggatgct 372 |||||||| Sbjct: 411 tgggatgct 419
>emb|BX823268.1|CNS0A6MH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS18ZF07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1046 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 278 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 337 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 338 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 397 Query: 364 ggggatgct 372 |||||||| Sbjct: 398 tgggatgct 406
>gb|AY086470.1| Arabidopsis thaliana clone 2531 mRNA, complete sequence Length = 1267 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 465 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 524 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 525 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 584 Query: 364 ggggatgct 372 |||||||| Sbjct: 585 tgggatgct 593
>gb|AF010321.1|AF010321 Oryza sativa photosystem I antenna protein (Lhca) mRNA, complete cds Length = 1066 Score = 58.0 bits (29), Expect = 2e-05 Identities = 74/89 (83%) Strand = Plus / Plus Query: 306 tgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcgg 365 |||||||| |||||||||||| || ||| || | ||||||||||||||||| | ||||| Sbjct: 281 tgcggtggaacgtgcaggcggatcttgtgcactgccggtgggcgatgctgggcgcggcgg 340 Query: 366 ggatgctgatcccggaggtgctgaccaag 394 | || | ||||||||| | ||||||||| Sbjct: 341 gcatcttcatcccggagttcctgaccaag 369
>gb|M63931.1|ATHCABM Arabidopsis thaliana light-harvesting chlorophyll a/b-binding protein (Cab4) mRNA, complete cds Length = 1050 Score = 58.0 bits (29), Expect = 2e-05 Identities = 104/129 (80%) Strand = Plus / Plus Query: 244 cggcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggagga 303 ||||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| | Sbjct: 274 cggcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaa 333 Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 | || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || Sbjct: 334 cttgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgc 393 Query: 364 ggggatgct 372 |||||||| Sbjct: 394 tgggatgct 402
>gb|AF359128.1| Pinus sylvestris plus tree E1101 LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 498 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 349 gatgctgggggtggcggggatgctgatcccggaggtgctgacca 392 ||||||||| |||||||||||||| |||||||| ||||| |||| Sbjct: 4 gatgctgggcgtggcggggatgcttatcccggaagtgctaacca 47
>gb|AF359127.1| Pinus sylvestris plus tree E635C LHC I type IV chlorophyll binding protein (LHCA4) gene, partial cds; nuclear gene for chloroplast product Length = 521 Score = 56.0 bits (28), Expect = 9e-05 Identities = 40/44 (90%) Strand = Plus / Plus Query: 349 gatgctgggggtggcggggatgctgatcccggaggtgctgacca 392 ||||||||| |||||||||||||| |||||||| ||||| |||| Sbjct: 4 gatgctgggcgtggcggggatgcttatcccggaagtgctaacca 47
>emb|AL132955.1|ATF1P2 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2 Length = 101154 Score = 54.0 bits (27), Expect = 4e-04 Identities = 102/127 (80%) Strand = Plus / Minus Query: 246 gcagtctggcgggtgacaatggttttgacccgctggcgctggcggaggacccggaggacc 305 ||||||| || ||||||||||| ||||||||| ||| || || ||||| || ||| || Sbjct: 7689 gcagtcttgccggtgacaatgggtttgacccgttgggtctagcagaggatccagagaact 7630 Query: 306 tgcggtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggcgg 365 || |||||||| ||||| |||||||| ||||| || ||||| ||||| || || || | Sbjct: 7629 tgaaatggttcgtccaggcagagctggtcaacggacgatgggctatgctcggtgtcgctg 7570 Query: 366 ggatgct 372 ||||||| Sbjct: 7569 ggatgct 7563
>emb|AJ579711.2|BVU579711 Beta vulgaris mRNA for chloroplast chlorophyll a/b binding protein (cab11 gene) Length = 1062 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 310 gtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 |||||| ||||| || |||||||||||||| || ||||| ||||| |||||||| Sbjct: 381 gtggtttgtgcaagccgagctggtgaacggccgatgggcaatgctaggggtggc 434
>gb|BC002118.1| Mus musculus cDNA clone MGC:6623 IMAGE:3491066, complete cds Length = 1008 Score = 52.0 bits (26), Expect = 0.001 Identities = 47/54 (87%) Strand = Plus / Plus Query: 310 gtggttcgtgcaggcggagctggtgaacgggcggtgggcgatgctgggggtggc 363 |||||| ||||| || |||||||||||||| || ||||| ||||| |||||||| Sbjct: 297 gtggtttgtgcaagccgagctggtgaacggccgatgggcaatgctaggggtggc 350
>gb|DQ122899.1| Chlamydomonas incerta chloroplast light harvesting complex I protein (LhcA) mRNA, complete cds; nuclear gene for chloroplast product Length = 746 Score = 48.1 bits (24), Expect = 0.022 Identities = 33/36 (91%) Strand = Plus / Plus Query: 304 cctgcggtggttcgtgcaggcggagctggtgaacgg 339 ||||||||||| ||||||||| ||||||||| |||| Sbjct: 198 cctgcggtggtacgtgcaggctgagctggtgcacgg 233
>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete sequence Length = 167067 Score = 48.1 bits (24), Expect = 0.022 Identities = 27/28 (96%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||||||||| ||||| Sbjct: 159313 acacacacacgcgcgcactctctctctc 159340
>dbj|AB112468.1| Chlamydomonas reinhardtii iar1 gene for Iar1 InvA related Kinesin, exon 1-23, complete cds Length = 8900 Score = 46.1 bits (23), Expect = 0.087 Identities = 23/23 (100%) Strand = Plus / Plus Query: 290 gaggacccggaggacctgcggtg 312 ||||||||||||||||||||||| Sbjct: 6391 gaggacccggaggacctgcggtg 6413
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 44.1 bits (22), Expect = 0.34 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccacccgccgcgacgtcgccgtccag 196 |||||||||||| ||||||||||||| Sbjct: 301280 ccacccgccgcgtcgtcgccgtccag 301255
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 107 ccggcggcgtcagcgtcgagc 127 ||||||||||||||||||||| Sbjct: 1184518 ccggcggcgtcagcgtcgagc 1184538
>emb|X91393.1|SADNAABAB S.antibioticus abaB gene Length = 1850 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 gcggaggacccggaggacctg 307 ||||||||||||||||||||| Sbjct: 638 gcggaggacccggaggacctg 658
>gb|AC144489.2| Gasterosteus aculeatus clone CH213-2D11, complete sequence Length = 228976 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactct 21 ||||||||||||||||||||| Sbjct: 177647 acacacacacgcgcgcactct 177627
>gb|AY095093.1| Drosophila melanogaster SD01674 full insert cDNA Length = 3618 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 cacacacacgcgcgcactctcactc 26 ||||||||||||||| ||||||||| Sbjct: 597 cacacacacgcgcgctctctcactc 573
>ref|NM_078835.2| Drosophila melanogaster kekkon-1 CG12283-RA (kek1), mRNA Length = 3595 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 cacacacacgcgcgcactctcactc 26 ||||||||||||||| ||||||||| Sbjct: 593 cacacacacgcgcgctctctcactc 569
>gb|AC009352.5| Drosophila melanogaster, chromosome 2L, region 34A-34A, BAC clone BACR11M13, complete sequence Length = 190301 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 cacacacacgcgcgcactctcactc 26 ||||||||||||||| ||||||||| Sbjct: 12287 cacacacacgcgcgctctctcactc 12311
>gb|AC093095.1| Drosophila melanogaster, chromosome 2L, region 33F-34A, BAC clone BACR17H02, complete sequence Length = 167544 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 cacacacacgcgcgcactctcactc 26 ||||||||||||||| ||||||||| Sbjct: 120013 cacacacacgcgcgctctctcactc 120037
>gb|DQ020212.1| Bambusa oldhamii cellulose synthase BoCesA4b mRNA, partial cds Length = 3409 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 atgctgggggtggcggggatg 370 ||||||||||||||||||||| Sbjct: 308 atgctgggggtggcggggatg 328
>gb|DQ020211.1| Bambusa oldhamii cellulose synthase BoCesA4a mRNA, complete cds Length = 3756 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 atgctgggggtggcggggatg 370 ||||||||||||||||||||| Sbjct: 646 atgctgggggtggcggggatg 666
>gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46 of 83 of the complete sequence Length = 222787 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 2 cacacacacgcgcgcactctcactc 26 ||||||||||||||| ||||||||| Sbjct: 178450 cacacacacgcgcgctctctcactc 178474
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 ccacccgccgcgacgtcgccg 191 ||||||||||||||||||||| Sbjct: 688896 ccacccgccgcgacgtcgccg 688916
>ref|XM_477205.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1534 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 163 cgccaagtccacccgccgcgacgtcgcc 190 ||||||| || ||||||||||||||||| Sbjct: 776 cgccaaggccgcccgccgcgacgtcgcc 749
>ref|NM_002206.1| Homo sapiens integrin, alpha 7 (ITGA7), mRNA Length = 4079 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 2479 atgctgatcccggaggtgct 2460
>ref|XM_472726.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 281 aggcggagctgatccacgggcggtgggcgatg 312
>gb|AC162284.11| Mus musculus chromosome 8, clone RP23-256C11, complete sequence Length = 162981 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 8374 ggaggacccggaggacctgc 8355
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 gcggtgggcgatgctggggg 359 |||||||||||||||||||| Sbjct: 79464 gcggtgggcgatgctggggg 79445
>gb|AC147377.4| Mus musculus BAC clone RP23-156K23 from chromosome 5, complete sequence Length = 236084 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcac 24 |||||||||||||||| ||||||| Sbjct: 165128 acacacacacgcgcgcgctctcac 165105
>ref|NM_001029980.1| Gallus gallus proline rich 5 (renal) (PRR5), mRNA Length = 2069 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ccgcgctcccgtggccgctc 101 |||||||||||||||||||| Sbjct: 42 ccgcgctcccgtggccgctc 23
>ref|NM_001844.3| Homo sapiens collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital) (COL2A1), transcript variant 1, mRNA Length = 5060 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggacccggaggacctgcgg 310 |||||||||||||||||||| Sbjct: 1231 aggacccggaggacctgcgg 1212
>ref|NM_033150.1| Homo sapiens collagen, type II, alpha 1 (primary osteoarthritis, spondyloepiphyseal dysplasia, congenital) (COL2A1), transcript variant 2, mRNA Length = 4853 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggacccggaggacctgcgg 310 |||||||||||||||||||| Sbjct: 1024 aggacccggaggacctgcgg 1005
>gb|BC069957.1| Mus musculus RIKEN cDNA 1500034J01 gene, mRNA (cDNA clone IMAGE:4502830), partial cds Length = 1982 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 836 ggaggacccggaggacctgc 817
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 328 gctggtgaacgggcggtgggcgatgctggggg 359 |||||||| |||||||||||| ||||||||| Sbjct: 1885374 gctggtgagggggcggtgggcggtgctggggg 1885343
>gb|AC127416.7| Mus musculus BAC clone RP23-457J22 from chromosome 8, complete sequence Length = 206997 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 137552 ggaggacccggaggacctgc 137533
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gcggtgggcgatgctggggg 359 |||||||||||||||||||| Sbjct: 21808352 gcggtgggcgatgctggggg 21808371
>ref|XM_548544.2| PREDICTED: Canis familiaris similar to solute carrier family 15, member 4 (LOC491423), mRNA Length = 1986 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 ggcggagctggtgaacgggcggtg 345 ||||||||||| |||||||||||| Sbjct: 408 ggcggagctggcgaacgggcggtg 385
>gb|AC118206.11| Mus musculus chromosome 3, clone RP24-159J16, complete sequence Length = 255036 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||| ||||||||| ||||| Sbjct: 227780 acacacacacgcacgcactctctctctc 227753
>ref|XM_980756.1| PREDICTED: Mus musculus RIKEN cDNA 1500034J01 gene (1500034J01Rik), mRNA Length = 2278 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 801 ggaggacccggaggacctgc 782
>ref|XM_980302.1| PREDICTED: Mus musculus RIKEN cDNA 1500034J01 gene (1500034J01Rik), mRNA Length = 2459 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 801 ggaggacccggaggacctgc 782
>ref|XM_898536.2| PREDICTED: Mus musculus transmembrane protein 16H, transcript variant 2 (Tmem16h), mRNA Length = 7202 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 3838 ggaggacccggaggacctgc 3857
>ref|XM_898544.2| PREDICTED: Mus musculus transmembrane protein 16H, transcript variant 3 (Tmem16h), mRNA Length = 7873 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 4509 ggaggacccggaggacctgc 4528
>ref|XM_889480.2| PREDICTED: Mus musculus transmembrane protein 16H, transcript variant 1 (Tmem16h), mRNA Length = 8182 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 4818 ggaggacccggaggacctgc 4837
>ref|XM_980411.1| PREDICTED: Mus musculus transmembrane protein 16H (Tmem16h), mRNA Length = 6658 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 3294 ggaggacccggaggacctgc 3313
>ref|XM_912953.2| PREDICTED: Mus musculus RIKEN cDNA 1500034J01 gene (1500034J01Rik), mRNA Length = 2278 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 801 ggaggacccggaggacctgc 782
>ref|XM_748282.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g12780) partial mRNA Length = 999 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 ctccggccgcgtcgggctcgccaagtcc 172 ||||||||||| ||||||||||| |||| Sbjct: 273 ctccggccgcggcgggctcgccatgtcc 300
>gb|BC034701.1| Mus musculus RIKEN cDNA 1500034J01 gene, mRNA (cDNA clone MGC:27873 IMAGE:3494430), complete cds Length = 1918 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 758 ggaggacccggaggacctgc 739
>gb|AY358882.1| Homo sapiens clone DNA55737 ITGA7 (UNQ406) mRNA, complete cds Length = 3951 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 2349 atgctgatcccggaggtgct 2330
>gb|AC160547.6| Mus musculus chromosome 8, clone RP23-240F23, complete sequence Length = 170722 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 107961 ggaggacccggaggacctgc 107942
>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence Length = 1471779 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 142 cgactccggccgcgtcgggctcgc 165 ||||||||||||||||| |||||| Sbjct: 746809 cgactccggccgcgtcgcgctcgc 746786
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cggccgcgtcgggctcgcca 167 |||||||||||||||||||| Sbjct: 1316841 cggccgcgtcgggctcgcca 1316822
>gb|AC120768.5| Rattus norvegicus 7 BAC CH230-152B10 (Children's Hospital Oakland Research Institute) complete sequence Length = 221436 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||| ||||||||| ||||| Sbjct: 146994 acacacacacgcacgcactctctctctc 147021
>emb|CR936218.6| Human DNA sequence from clone RP11-669E14, complete sequence Length = 213739 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 200164 acacacacacgcgcgcactc 200183
>emb|BX649442.7| Zebrafish DNA sequence from clone DKEY-265J8 in linkage group 9, complete sequence Length = 176456 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcac 24 |||||||||||||||||| ||||| Sbjct: 171502 acacacacacgcgcgcacactcac 171525
>ref|NM_204790.1| Gallus gallus alpha 1 (V) collagen (LOC395568), mRNA Length = 5575 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggaggacccggaggacctg 307 |||||||||||||||||||| Sbjct: 3057 cggaggacccggaggacctg 3038
>gb|BC050280.1| Homo sapiens integrin, alpha 7, mRNA (cDNA clone MGC:33821 IMAGE:5284443), complete cds Length = 4130 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 2534 atgctgatcccggaggtgct 2515
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 20137 aggcggagctgatccacgggcggtgggcgatg 20106
>emb|CR932417.12| Human DNA sequence from clone XX-D_24I13, complete sequence Length = 198202 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 155300 acacacacacgcgcgcactc 155319
>emb|CR388085.9| Zebrafish DNA sequence from clone CH211-232D10, complete sequence Length = 149672 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||||| ||| ||||| Sbjct: 126000 acacacacacgcgcgcacactctctctc 125973
>emb|CR628395.7| Zebrafish DNA sequence from clone DKEY-165E24, complete sequence Length = 250797 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 166765 acacacacacgcgcgctctctctctctc 166792
>emb|BX321873.12| Zebrafish DNA sequence from clone DKEY-151G22 in linkage group 20 Contains four novel genes and three CpG islands, complete sequence Length = 155649 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 ||||| |||||||||||||||| ||||| Sbjct: 57976 acacagacacgcgcgcactctctctctc 58003
>gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192550 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 42716 atgctgatcccggaggtgct 42697
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 354 tgggggtggcggggatgctg 373 |||||||||||||||||||| Sbjct: 145178 tgggggtggcggggatgctg 145159
>gb|AY119482.1| Drosophila melanogaster GH07166 full insert cDNA Length = 2928 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 ||||||||||| |||||||||| ||||| Sbjct: 150 acacacacacgagcgcactctcgctctc 123
>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177096 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acacacgcgcgcactctcac 24 |||||||||||||||||||| Sbjct: 48239 acacacgcgcgcactctcac 48220
>emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in linkage group 1, complete sequence Length = 148544 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 23994 acacacacacgcgcgcactc 23975
>dbj|AK022548.1| Homo sapiens cDNA FLJ12486 fis, clone NT2RM2000566, highly similar to Homo sapiens integrin alpha-7 mRNA Length = 3504 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 1922 atgctgatcccggaggtgct 1903
>gb|DQ427744.1| Sorghum propinquum locus HHU11 genomic sequence Length = 757 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 333 aggcggagctgatccacgggcggtgggcgatg 364
>gb|DQ427743.1| Sorghum bicolor voucher PI585454 locus HHU11 genomic sequence Length = 755 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 331 aggcggagctgatccacgggcggtgggcgatg 362
>gb|DQ427742.1| Sorghum bicolor voucher PI267539 locus HHU11 genomic sequence Length = 755 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 331 aggcggagctgatccacgggcggtgggcgatg 362
>gb|DQ427741.1| Sorghum bicolor voucher PI267408 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427740.1| Sorghum bicolor voucher PI221607 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427739.1| Sorghum bicolor voucher PI152702 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427738.1| Sorghum bicolor voucher NSL92371 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427737.1| Sorghum bicolor voucher NSL87902b locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427736.1| Sorghum bicolor voucher NSL87902a locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427735.1| Sorghum bicolor voucher NSL87666 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427734.1| Sorghum bicolor voucher NSL77217 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427733.1| Sorghum bicolor voucher NSL77034 locus HHU11 genomic sequence Length = 755 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 331 aggcggagctgatccacgggcggtgggcgatg 362
>gb|DQ427732.1| Sorghum bicolor voucher NSL56174 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427731.1| Sorghum bicolor voucher NSL55243 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427730.1| Sorghum bicolor voucher NSL51365 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427729.1| Sorghum bicolor voucher NSL51030 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>gb|DQ427728.1| Sorghum bicolor voucher NSL50875 locus HHU11 genomic sequence Length = 761 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 337 aggcggagctgatccacgggcggtgggcgatg 368
>ref|NM_169873.1| Drosophila melanogaster CG7535-RB, transcript variant B (GluClalpha), mRNA Length = 2293 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 127 acacacacacgcgcgcgctctcgctctc 100
>ref|NM_142570.2| Drosophila melanogaster CG7535-RA, transcript variant A (GluClalpha), mRNA Length = 4014 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 127 acacacacacgcgcgcgctctcgctctc 100
>ref|NM_058026.3| Drosophila melanogaster ariadne 2 CG5709-RA (ari-2), mRNA Length = 3002 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 ||||||||||| |||||||||| ||||| Sbjct: 242 acacacacacgagcgcactctcgctctc 215
>ref|NM_001038972.1| Drosophila melanogaster CG7535-RD, transcript variant D (GluClalpha), mRNA Length = 2293 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 127 acacacacacgcgcgcgctctcgctctc 100
>ref|NM_001014641.1| Drosophila melanogaster CG7535-RC, transcript variant C (GluClalpha), mRNA Length = 2296 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 127 acacacacacgcgcgcgctctcgctctc 100
>dbj|AK149980.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530111L19 product:hypothetical protein, full insert sequence Length = 1059 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 778 ggaggacccggaggacctgc 759
>gb|AC091628.2| Homo sapiens chromosome 17 map 17q21.1, complete sequence Length = 201397 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 8255 acacacacacgcgcgcactc 8236
>dbj|AK160132.1| Mus musculus adult male cerebellum cDNA, RIKEN full-length enriched library, clone:1500034J01 product:hypothetical Proline-rich region profile containing protein, full insert sequence Length = 1916 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 796 ggaggacccggaggacctgc 777
>dbj|AK149117.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120484N02 product:weakly similar to Proline-rich protein MP-2 precursor [Mus musculus], full insert sequence Length = 1836 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 728 ggaggacccggaggacctgc 709
>gb|AC099019.1| Drosophila melanogaster, chromosome 2R, region 58C-58D, BAC clone BACR02O12, complete sequence Length = 171594 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 ||||||||||| |||||||||| ||||| Sbjct: 33242 acacacacacgagcgcactctcgctctc 33269
>emb|BX664606.17| Zebrafish DNA sequence from clone CH211-171L17 in linkage group 22, complete sequence Length = 181178 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||||| ||| ||||| Sbjct: 104231 acacacacacgcgcgcacactctctctc 104204
>dbj|AK032966.1| Mus musculus 12 days embryo male wolffian duct includes surrounding region cDNA, RIKEN full-length enriched library, clone:6720482G04 product:hypothetical protein, full insert sequence Length = 1894 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 756 ggaggacccggaggacctgc 737
>dbj|AK006318.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700025A19 product:hypothetical protein, full insert sequence Length = 915 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 782 ggaggacccggaggacctgc 763
>emb|CR353501.1| Gallus gallus finished cDNA, clone ChEST132n8 Length = 2069 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 ccgcgctcccgtggccgctc 101 |||||||||||||||||||| Sbjct: 42 ccgcgctcccgtggccgctc 23
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 22811362 aggcggagctgatccacgggcggtgggcgatg 22811331
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgacgtcgccgtccaggcca 200 |||||||||||||||||||| Sbjct: 8420595 cgacgtcgccgtccaggcca 8420614
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gcggtgggcgatgctggggg 359 |||||||||||||||||||| Sbjct: 21801381 gcggtgggcgatgctggggg 21801400
>gb|BC093523.1| Mus musculus RIKEN cDNA 1500034J01 gene, mRNA (cDNA clone MGC:103301 IMAGE:3711509), complete cds Length = 1897 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 741 ggaggacccggaggacctgc 722
>gb|AC007815.7|AC007815 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR07I18, complete sequence Length = 159413 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 154314 acacacacacgcgcgcgctctcgctctc 154287
>dbj|AB210036.1| Homo sapiens mRNA for ITGA7 variant protein, partial cds, clone: hk04261 Length = 4090 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 2508 atgctgatcccggaggtgct 2489
>gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone BACR48D03, complete sequence Length = 175917 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 40038 acacacacacgcgcgcgctctcgctctc 40011
>gb|AC154857.2| Mus musculus BAC clone RP23-16K21 from chromosome 13, complete sequence Length = 214859 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 50549 acacacacacgcgcgcactc 50568
>gb|AF072132.1|AF072132 Homo sapiens integrin alpha-7 mRNA, complete cds Length = 3485 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 2318 atgctgatcccggaggtgct 2299
>gb|AY183051.1| Trifolium repens clone ca672 microsatellite sequence Length = 498 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||| ||||||||||| ||||| Sbjct: 199 acacacacactcgcgcactctctctctc 226
>gb|AC158686.2| Mus musculus 10 BAC RP24-74G10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 217129 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||||| | ||||||| Sbjct: 194867 acacacacacgcgcgcacacgcactctc 194894
>gb|AC138624.4| Mus musculus BAC clone RP23-187N1 from chromosome 7, complete sequence Length = 226264 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 2 cacacacacgcgcgcactctcactctcc 29 ||||||||||||||||| | |||||||| Sbjct: 92587 cacacacacgcgcgcacacgcactctcc 92614
>gb|AC010792.4|AC010792 Homo sapiens chromosome 17, clone -2524N8, complete sequence Length = 117406 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 3778 acacacacacgcgcgcactc 3759
>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0406F06 Length = 144533 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 cgacgtcgccgtccaggcca 200 |||||||||||||||||||| Sbjct: 50393 cgacgtcgccgtccaggcca 50374
>gb|BC079637.1| Mus musculus RIKEN cDNA 1500034J01 gene, mRNA (cDNA clone IMAGE:5719502) Length = 4517 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 ggaggacccggaggacctgc 308 |||||||||||||||||||| Sbjct: 3365 ggaggacccggaggacctgc 3346
>emb|BX544879.6| Human DNA sequence from clone RP11-769P22 on chromosome 17, complete sequence Length = 177152 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 137526 acacacacacgcgcgcactc 137545
>dbj|AK057949.1| Homo sapiens cDNA FLJ25220 fis, clone STM00558, highly similar to Homo sapiens integrin alpha-7 mRNA Length = 1965 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 383 atgctgatcccggaggtgct 364
>emb|X12735.1|HVCAB2 Barley Cab-2 gene for major light-harvesting chlorophyll a/b- binding protein ( LHCP ) Length = 1030 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 336 acgggcggtgggcgatgctggggg 359 ||||||| |||||||||||||||| Sbjct: 479 acgggcgctgggcgatgctggggg 502
>dbj|AK109697.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F02, full insert sequence Length = 2370 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgacgtcgccgtccaggcca 200 |||||||||||||||||||| Sbjct: 1578 cgacgtcgccgtccaggcca 1597
>dbj|AK108672.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-H08, full insert sequence Length = 1377 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 517 aggcggagctgatccacgggcggtgggcgatg 486
>gb|AF137273.1|AF137273 Gallus gallus alpha 1 (V) collagen mRNA, complete cds Length = 5575 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 cggaggacccggaggacctg 307 |||||||||||||||||||| Sbjct: 3057 cggaggacccggaggacctg 3038
>dbj|AK104811.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G02, full insert sequence Length = 1138 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 343 aggcggagctgatccacgggcggtgggcgatg 374
>gb|AC004817.2|AC004817 Homo sapiens PAC clone RP6-91H8 from 14q24.3, complete sequence Length = 128398 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||| ||||| ||||||||| Sbjct: 99647 acacacacacgcacgcacactcactctc 99620
>dbj|AK068542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155H18, full insert sequence Length = 1534 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 163 cgccaagtccacccgccgcgacgtcgcc 190 ||||||| || ||||||||||||||||| Sbjct: 776 cgccaaggccgcccgccgcgacgtcgcc 749
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 cgccgcgacgtcgccgtccaggcc 199 ||||||| |||||||||||||||| Sbjct: 2461449 cgccgcgtcgtcgccgtccaggcc 2461472
>dbj|AK066762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075I09, full insert sequence Length = 1106 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gcggtgggcgatgctggggg 359 |||||||||||||||||||| Sbjct: 351 gcggtgggcgatgctggggg 370
>dbj|AK066070.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055K10, full insert sequence Length = 1144 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 344 aggcggagctgatccacgggcggtgggcgatg 375
>emb|BX901908.8| Zebrafish DNA sequence from clone DKEY-268B12 in linkage group 4, complete sequence Length = 210697 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||| ||| ||||||||||||| Sbjct: 24209 acacacacacacgcacactctcactctc 24236
>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0407H12 Length = 167754 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 163 cgccaagtccacccgccgcgacgtcgcc 190 ||||||| || ||||||||||||||||| Sbjct: 142431 cgccaaggccgcccgccgcgacgtcgcc 142458
>gb|AY103838.1| Zea mays PCO113775 mRNA sequence Length = 958 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 321 aggcggagctggtgaacgggcggtgggcgatg 352 ||||||||||| | ||||||||||||||||| Sbjct: 335 aggcggagctgatccacgggcggtgggcgatg 366
>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the complete sequence Length = 242618 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 135652 acacacacacgcgcgcgctctcgctctc 135625
>emb|AJ228853.1|HSAJ8853 Homo sapiens ITGA7 gene, exon 18 Length = 247 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 100 atgctgatcccggaggtgct 81
>gb|AE003456.3| Drosophila melanogaster chromosome 2R, section 64 of 73 of the complete sequence Length = 288451 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 ||||||||||| |||||||||| ||||| Sbjct: 214984 acacacacacgagcgcactctcgctctc 214957
>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete sequence Length = 304204 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acacacgcgcgcactctcac 24 |||||||||||||||||||| Sbjct: 110549 acacacgcgcgcactctcac 110530
>gb|AC113036.8| Mus musculus chromosome 13, clone RP23-223B10, complete sequence Length = 190133 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactc 20 |||||||||||||||||||| Sbjct: 184167 acacacacacgcgcgcactc 184186
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gtgctgaccaaggcggtgct 402 |||||||||||||||||||| Sbjct: 3233179 gtgctgaccaaggcggtgct 3233198
>gb|U58776.1|DMU58776 Drosophila melanogaster glutamate-gated chloride channel (DrosGluCl) mRNA, complete cds Length = 3958 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| ||||| ||||| Sbjct: 121 acacacacacgcgcgcgctctcgctctc 94
>gb|AF032108.1|AF032108 Homo sapiens integrin alpha-7 mRNA, complete cds Length = 4079 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 368 atgctgatcccggaggtgct 387 |||||||||||||||||||| Sbjct: 2479 atgctgatcccggaggtgct 2460
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgacgtcgccgtccaggcca 200 |||||||||||||||||||| Sbjct: 8420478 cgacgtcgccgtccaggcca 8420497
>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146444 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 cgacgtcgccgtccaggcca 200 |||||||||||||||||||| Sbjct: 27258 cgacgtcgccgtccaggcca 27277
>gb|AF061577.1|AF061577 Oryza sativa chlorophyll a/b binding protein (RCABP89) mRNA, nuclear gene encoding chloroplast protein, complete cds Length = 1027 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gcggtgggcgatgctggggg 359 |||||||||||||||||||| Sbjct: 340 gcggtgggcgatgctggggg 359
>gb|AC002473.1|AC002473 Drosophila melanogaster (P1 DS02833 (D61)) DNA sequence, complete sequence Length = 71504 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 ||||||||||| |||||||||| ||||| Sbjct: 48459 acacacacacgagcgcactctcgctctc 48432
>gb|AC132149.4| Mus musculus BAC clone RP23-10H23 from 3, complete sequence Length = 217329 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||| ||||||||| ||||| Sbjct: 153089 acacacacacgcacgcactctctctctc 153116
>emb|CR749776.6| Zebrafish DNA sequence from clone CH211-206L17 in linkage group 9, complete sequence Length = 154131 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcac 24 |||||||||||||||||| ||||| Sbjct: 56310 acacacacacgcgcgcacactcac 56333
>emb|AL021067.1|DMC123F11 Drosophila melanogaster cosmid clone 123F11 Length = 23109 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 acacacgcgcgcactctcac 24 |||||||||||||||||||| Sbjct: 567 acacacgcgcgcactctcac 548
>emb|AJ010169.1|DME010169 Drosophila melanogaster mRNA for Ariadne-2 protein Length = 2998 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacacgcgcgcactctcactctc 28 ||||||||||| |||||||||| ||||| Sbjct: 242 acacacacacgagcgcactctcgctctc 215
>emb|X16711.1|HSCOL2A1R H.sapiens COL2A1 mRNA for alpha1 (II) collagen Length = 3480 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 aggacccggaggacctgcgg 310 |||||||||||||||||||| Sbjct: 867 aggacccggaggacctgcgg 848
>gb|M76700.1|DROZSTA Drosophila virilis zeste gene, complete cds Length = 2708 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 1 acacacacacgcgcgcactctcactctc 28 |||||||||||||||| | ||||||||| Sbjct: 250 acacacacacgcgcgcgcgctcactctc 277
>dbj|AB078612.2| Leptothrix cholodnii orf1, lthA, lthB, lthC, orf5, orf6 genes, complete cds Length = 7608 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 gatgtcgtcggtcagtgccc 83 |||||||||||||||||||| Sbjct: 4132 gatgtcgtcggtcagtgccc 4113
>dbj|D00642.1|RICLHCP2 Oryza sativa (japonica cultivar-group) mRNA for type II light-harvesting chlorophyll a/b binding protein of photosystem II (LHCPII), complete cds Length = 989 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 gcggtgggcgatgctggggg 359 |||||||||||||||||||| Sbjct: 332 gcggtgggcgatgctggggg 351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,548,595 Number of Sequences: 3902068 Number of extensions: 2548595 Number of successful extensions: 74720 Number of sequences better than 10.0: 204 Number of HSP's better than 10.0 without gapping: 205 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73576 Number of HSP's gapped (non-prelim): 1129 length of query: 402 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 380 effective length of database: 17,147,199,772 effective search space: 6515935913360 effective search space used: 6515935913360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
