| Clone Name | baet31c01 |
|---|---|
| Clone Library Name | barley_pub |
>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC| 2.7.11.1) Length = 942 Score = 56.2 bits (134), Expect = 4e-08 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 11/148 (7%) Frame = +1 Query: 58 KDKDAPRSPTPSAP-GSQGQGA-ATRDKGNKKSKVVSLATTIPVAIXXXXXXXXXXXXXF 231 KDK + SP S+P G G G +D+ KS + + + F Sbjct: 445 KDKSSLSSPGSSSPSGGSGSGINGDKDRRGMKSSTF-IGIIVGSVLGGLLSIFLIGLLVF 503 Query: 232 C---KKNGSSVQPQATSSVVVHPRNSPDPENMVKVVMT-SNDSFGATSS-----GTSSRD 384 C K+ +++++VVVHPR+S VK+ + S+ S G S GTS Sbjct: 504 CWYKKRQKRFSGSESSNAVVVHPRHSGSDNESVKITVAGSSVSVGGISDTYTLPGTSEVG 563 Query: 385 SDIHMTEARSFMVSLQVLRCATKNFAQD 468 +I M EA + ++S+QVLR T NF+ D Sbjct: 564 DNIQMVEAGNMLISIQVLRSVTNNFSSD 591
>VTS1_SCHPO (Q9P6R7) Protein vts1| Length = 713 Score = 34.3 bits (77), Expect = 0.16 Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 18/152 (11%) Frame = +1 Query: 25 NMQSSPGGSTPK-DKDAPRSPTPS---------APGSQGQGAATRDKGNKKSKVVSLATT 174 ++ SSP G +P P T S P S QG A K + S +S A+ Sbjct: 162 SLPSSPKGDSPSLSSSLPSLTTKSNLSGNLNMVTPAST-QGPAFSSK-HGFSNALSTASP 219 Query: 175 IPVAIXXXXXXXXXXXXXFCKKNG-------SSVQPQATSSVVVHPRNSPDPENM-VKVV 330 IPV KN SS++P A SS PRN+P P N + Sbjct: 220 IPVRTSSVSSTYLTQDREASSKNCLSKALAFSSIEPPA-SSASTSPRNTPTPSNNGTSIN 278 Query: 331 MTSNDSFGATSSGTSSRDSDIHMTEARSFMVS 426 S + S+G +S+ +D+ + ++ + S Sbjct: 279 ANVTSSLTSNSTGKTSKTTDLLIAASKKSLPS 310
>ZN395_HUMAN (Q9H8N7) Zinc finger protein 395 (Papillomavirus-binding factor)| (Papillomavirus regulatory factor 1) (PRF-1) (Huntington disease gene regulatory region-binding protein 2) (HDBP-2) (HD gene regulatory region-binding protein 2) (HD-regulating Length = 513 Score = 33.9 bits (76), Expect = 0.21 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 9/81 (11%) Frame = +2 Query: 11 AIPTSTCSRRPVVLLPRTRT-PLGHRRQARPAHKAKGL----PLATKGTRRAR----LCR 163 A P++ CS PV R+R+ +Q PA K+ + P A G R+AR CR Sbjct: 432 AAPSAACSLSPV----RSRSLSFSEPQQPAPAMKSHLIVTSPPRAQSGARKARGEAKKCR 487 Query: 164 WLPQFRLRSGWCHCCHWVLWC 226 + R WC C W C Sbjct: 488 KVYGIEHRDQWCTACRWKKAC 508
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 33.5 bits (75), Expect = 0.28 Identities = 35/131 (26%), Positives = 46/131 (35%) Frame = +1 Query: 10 GNPNFNMQSSPGGSTPKDKDAPRSPTPSAPGSQGQGAATRDKGNKKSKVVSLATTIPVAI 189 G+ + PGG+ +P SPT S PGS K S VS AT+ P Sbjct: 146 GSSTPGSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSP--KSSSAVSPATSPP--- 200 Query: 190 XXXXXXXXXXXXXFCKKNGSSVQPQATSSVVVHPRNSPDPENMVKVVMTSNDSFGATSSG 369 K+GS V P + P S P + MTS + A S Sbjct: 201 -----------GSMAPKSGSPVSPTTSPPA---PPKSTSPVSPSSAPMTSPPAPMAPKSS 246 Query: 370 TSSRDSDIHMT 402 ++ S MT Sbjct: 247 STIPPSSAPMT 257
>HRX_HUMAN (Q03164) Zinc finger protein HRX (ALL-1) (Trithorax-like protein)| Length = 3969 Score = 32.7 bits (73), Expect = 0.47 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 7/54 (12%) Frame = +1 Query: 34 SSPGGSTPKDKDAPRSPTPSAPGSQGQGAATR------DKGN-KKSKVVSLATT 174 +SPGGS RS +PS PG T+ DKGN KK KV L T+ Sbjct: 3510 TSPGGSPSSPSSGQRSASPSVPGPTKPKPKTKRFQLPLDKGNGKKHKVSHLRTS 3563
>VIF_BIV27 (P19563) Virion infectivity factor (Q protein)| Length = 198 Score = 32.7 bits (73), Expect = 0.47 Identities = 20/46 (43%), Positives = 24/46 (52%) Frame = -3 Query: 238 SCRRAPQHPVTAMTPPRSQPELW*PATQPCSSCSLCREWQPLGLVS 101 SCRRA Q V TP S L A Q C++ LC W PLG ++ Sbjct: 133 SCRRALQASVLTSTPRHSLQRL--AALQLCTNACLC--WYPLGRIN 174
>VIF_BIV06 (P19562) Virion infectivity factor (Q protein)| Length = 198 Score = 32.7 bits (73), Expect = 0.47 Identities = 20/46 (43%), Positives = 24/46 (52%) Frame = -3 Query: 238 SCRRAPQHPVTAMTPPRSQPELW*PATQPCSSCSLCREWQPLGLVS 101 SCRRA Q V TP S L A Q C++ LC W PLG ++ Sbjct: 133 SCRRALQASVLTSTPRHSLQRL--AALQLCTNACLC--WYPLGRIN 174
>NFI_STRCO (Q9X7N2) Endonuclease V (EC 3.1.21.7) (Deoxyinosine 3'endonuclease)| (Deoxyribonuclease V) (DNase V) Length = 233 Score = 31.6 bits (70), Expect = 1.0 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +1 Query: 1 ILTGNPNFNMQSSPGGSTPKDKDAPR-SPTPSAPGSQGQGAATRDKGNKKSKVVSL 165 +LTG P + +P T D D PR S +P G++ G A R + K VS+ Sbjct: 134 VLTGLPTIGVAKNPFTFTHDDPDTPRGSTSPLLAGAEEVGRAVRTRDGVKPVFVSV 189
>GAG_SFV3L (P27400) Gag polyprotein (Core polyprotein)| Length = 643 Score = 31.2 bits (69), Expect = 1.4 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 4/86 (4%) Frame = +1 Query: 31 QSSPGGSTPKDKDAPRSPTPSAPGSQ----GQGAATRDKGNKKSKVVSLATTIPVAIXXX 198 Q+ PG S+ + + + P P A G Q G G + +GN+ + Sbjct: 553 QAQPGRSSDQPRSQSQQPQPEARGDQSRTSGAGRGQQGRGNQNRNQRRADANNTRNVDTV 612 Query: 199 XXXXXXXXXXFCKKNGSSVQPQATSS 276 +NGSS P A+ S Sbjct: 613 TATTTSSSTASSGQNGSSTTPPASGS 638
>RGNEF_MOUSE (P97433) Rho-guanine nucleotide exchange factor (Rho-interacting| protein 2) (RhoGEF) (RIP2) Length = 1693 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 6/49 (12%) Frame = +1 Query: 10 GNPNFNMQSSPGGS----TPKDKDAPRSPTPS--APGSQGQGAATRDKG 138 G+ + + + SPGG+ TP +D P SPT S G++G+G D G Sbjct: 1291 GDVSQSSEESPGGTVLMDTPSTQDVPASPTASLVTEGTEGRGCWDVDPG 1339
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 30.8 bits (68), Expect = 1.8 Identities = 14/39 (35%), Positives = 24/39 (61%) Frame = +1 Query: 4 LTGNPNFNMQSSPGGSTPKDKDAPRSPTPSAPGSQGQGA 120 L +P+ ++ S S+P D+ +P+PS+ GS+G GA Sbjct: 213 LAPSPSDSVASLAPSSSPSDESPSPAPSPSSSGSKGGGA 251
>TTHY_RANCA (P31779) Transthyretin precursor (Prealbumin) (Tadpole T3-binding| protein) (T-T3BP) (THBP) Length = 153 Score = 30.4 bits (67), Expect = 2.3 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = +1 Query: 292 RNSPDPENMVKVVMTSND-SFGATSSGTSSRDSDIH-MTEARSFMVSLQVLRCATKNF 459 R P + VKV + D S+ SSGT+S D +IH + F+ + L ATK F Sbjct: 44 RGIPAAKLPVKVFKQNEDKSWDLISSGTTSSDGEIHNLATEEQFVEGIYKLEFATKRF 101
>TRME_PSESM (Q87TS2) tRNA modification GTPase trmE| Length = 456 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/50 (32%), Positives = 25/50 (50%) Frame = -1 Query: 465 LSKVLGGTTKNLQGDHKTACLGHVNVTVPAAGSARRSAEAVIARHDNLDH 316 LS GG L +H AC+G+ + + + RR EA+ D+L+H Sbjct: 358 LSARSGGEGLELLREHLKACMGYEQTSESSFSARRRHLEALRHASDSLEH 407
>SRBP2_CRIGR (Q60429) Sterol regulatory element-binding protein 2 (SREBP-2)| (Sterol regulatory element-binding transcription factor 2) Length = 1139 Score = 30.0 bits (66), Expect = 3.1 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 1/94 (1%) Frame = +1 Query: 34 SSPGGSTPKDKDAPRSPTPSAPGSQGQGAATRDKGNKKS-KVVSLATTIPVAIXXXXXXX 210 S PGG + + S + S S+G G A D G ++S V L T P Sbjct: 53 SFPGGGSSGSSSSSNSSSSSGSNSRGNGGAATDPGVQRSFSQVPLPTFSP--------ST 104 Query: 211 XXXXXXFCKKNGSSVQPQATSSVVVHPRNSPDPE 312 + S P+AT V+ PR P P+ Sbjct: 105 ASPQALALQVKVSPTPPRATP--VLQPRPQPQPQ 136
>NU2M_MAMPR (Q38PS1) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 347 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = -2 Query: 407 ASVM*MSLSRLLVPLDVAPKLSLLVMTTLTMFSGSGLLRGWT 282 A+ + S+S L++ + P +++++MTTL G LL G+T Sbjct: 220 ANTLTTSMSSLILMWNKTPAMTIMLMTTLLSLGGLPLLSGFT 261
>SMAD1_MOUSE (P70340) Mothers against decapentaplegic homolog 1 (SMAD 1)| (Mothers against DPP homolog 1) (Mad-related protein 1) (Mothers-against-DPP-related-1) (mMad1) (Dwarfin-A) (Dwf-A) Length = 465 Score = 29.6 bits (65), Expect = 4.0 Identities = 16/34 (47%), Positives = 20/34 (58%) Frame = +1 Query: 13 NPNFNMQSSPGGSTPKDKDAPRSPTPSAPGSQGQ 114 +PN + +SPGGS+ P SPT S PGS Q Sbjct: 187 SPNSSYPNSPGGSS---STYPHSPTSSDPGSPFQ 217
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 29.6 bits (65), Expect = 4.0 Identities = 19/52 (36%), Positives = 26/52 (50%) Frame = +1 Query: 310 ENMVKVVMTSNDSFGATSSGTSSRDSDIHMTEARSFMVSLQVLRCATKNFAQ 465 E + KV +T ND+F T SGT++ D I R +VL T NF + Sbjct: 47 EKLKKVFITENDTFLITGSGTAAMDMAISNIIKRGD----KVLNIVTGNFGE 94
>RLA0_PYRHO (O74109) Acidic ribosomal protein P0 homolog (L10E)| Length = 342 Score = 29.6 bits (65), Expect = 4.0 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +1 Query: 34 SSPGGSTPKDKDAPRSPTPSAPG 102 + PG PKD P PTP APG Sbjct: 112 AKPGAVVPKDVVVPAGPTPLAPG 134
>SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Shank3)| (Proline-rich synapse associated protein 2) (ProSAP2) (SPANK-2) Length = 1815 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 34 SSPGGSTPKDKDAPRSPTPSAPGSQG 111 S PGGS P P SP P AP +G Sbjct: 511 SGPGGSGPAPGPGPASPAPPAPPPRG 536
>RLA0_PYRAB (Q9UXS5) Acidic ribosomal protein P0 homolog (L10E)| Length = 341 Score = 29.3 bits (64), Expect = 5.2 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +1 Query: 34 SSPGGSTPKDKDAPRSPTPSAPG 102 + PG PKD P PTP APG Sbjct: 112 AKPGAVVPKDVVIPAGPTPLAPG 134
>RL2_MYCGA (O52335) 50S ribosomal protein L2| Length = 283 Score = 29.3 bits (64), Expect = 5.2 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = +1 Query: 13 NPNFNMQSSPGGSTPKDKDAPRSPTPSAPGSQGQGAATRDKGNKKS 150 NPN + G +P +DAPR+P G + G TR+ NKKS Sbjct: 232 NPNDHPHGGGEGRSPVGRDAPRTPW----GKRHMGVKTRN--NKKS 271
>ALEU_HORVU (P05167) Thiol protease aleurain precursor (EC 3.4.22.16)| Length = 362 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 75 SVTDAKRARLTRPRGCHSRQREQEEQGCVAGYHNSGCDRG 194 S T A A T+ G + EQ+ C G++N GC+ G Sbjct: 172 STTGALEAAYTQATGKNISLSEQQLVDCAGGFNNFGCNGG 211
>NBEA_HUMAN (Q8NFP9) Protein neurobeachin (Lysosomal trafficking regulator 2)| (Protein BCL8B) Length = 2946 Score = 28.9 bits (63), Expect = 6.8 Identities = 26/90 (28%), Positives = 38/90 (42%) Frame = -2 Query: 377 LLVPLDVAPKLSLLVMTTLTMFSGSGLLRGWTTTEEVACGCTDDPFFLQKSTTAPSDSND 198 ++VP+ P SL V T +GSGL G T+ A G T +TT DS Sbjct: 1791 VVVPVKKPPPGSLAVTTVGATTAGSGLPTGSTSNIFAATGATPKSMI---NTTGAVDSGS 1847 Query: 197 TTPIATGIVVASDTTLLFLFPLSRVAAPWP 108 ++ ++ V T+ P + AP P Sbjct: 1848 SSSSSSSSFVNGATSK--NLPAVQTVAPMP 1875
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/28 (46%), Positives = 13/28 (46%) Frame = +1 Query: 40 PGGSTPKDKDAPRSPTPSAPGSQGQGAA 123 PG S P P P PS PG G G A Sbjct: 202 PGKSQPVSGPGPGGPGPSGPGGPGPGPA 229
>PALM_HUMAN (O75781) Paralemmin| Length = 387 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 8/60 (13%) Frame = +1 Query: 25 NMQSSPGGSTPKDKDAPRSPTPSAPGSQGQGAA--------TRDKGNKKSKVVSLATTIP 180 N Q +P G TPKDK +P + GS AA +DK +++V+S T +P Sbjct: 137 NSQQTPVG-TPKDKRVSNTPLRTVDGSPMMKAAMYSVEITVEKDKVTGETRVLSSTTLLP 195
>PHP_DROME (P39769) Polyhomeotic-proximal chromatin protein| Length = 1589 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/60 (25%), Positives = 25/60 (41%) Frame = +1 Query: 10 GNPNFNMQSSPGGSTPKDKDAPRSPTPSAPGSQGQGAATRDKGNKKSKVVSLATTIPVAI 189 G P + + STP AP +P + + T +K + V+ TT+P+ I Sbjct: 144 GTPPTGRRQTHTPSTPNRPSAPSTPNTNCNSIARHTSLTLEKAQNPGQQVAATTTVPLQI 203
>RL2_MYCPE (Q8EUB6) 50S ribosomal protein L2| Length = 279 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/49 (30%), Positives = 24/49 (48%) Frame = +1 Query: 13 NPNFNMQSSPGGSTPKDKDAPRSPTPSAPGSQGQGAATRDKGNKKSKVV 159 NPN + G +P DAPR+P G + G TR+K + + ++ Sbjct: 230 NPNDHPHGGGEGRSPVGHDAPRTPW----GKRHMGVKTRNKKKQSNALI 274
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 40 PGGSTPKDKDAPRSPTPSAPGSQGQGA 120 P S+PKD+ A + T +A G+ G+GA Sbjct: 1690 PSASSPKDQKAVAAATSAATGATGKGA 1716
>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)| Length = 1426 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = +1 Query: 31 QSSPGGSTPKDKDAPRSPTPSAPGSQGQGAATRDKGNKK--SKVVSLATT 174 Q +P TP + APRS TP S GQ AT +K +KVV + +T Sbjct: 137 QHTPHSMTPSNATAPRSSTP----SHGQTTATEPTPAQKTPAKVVYVFST 182
>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC| 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3259 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 368 EPAAGTVTFT*PRHAVLWSPCRFFVVPPRT 457 +PA TVTF V+W CR ++ PRT Sbjct: 1410 QPACVTVTFNHVEAQVVWRSCRGALLEPRT 1439
>YXWK_CAEEL (Q21184) Putative cuticle collagen F55C10.3| Length = 266 Score = 28.5 bits (62), Expect = 8.9 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = +1 Query: 16 PNFNMQSSPGGSTPKDKDAPRSP-TPSAPGSQG 111 PN N +PG +DAP P TP APG QG Sbjct: 158 PNGN-PGAPGAPGQPGQDAPSEPITPGAPGPQG 189
>PKH3_YEAST (Q03306) Serine/threonine-protein kinase PKH3 (EC 2.7.11.1)| (Pkb-activating kinase homolog 3) Length = 898 Score = 28.5 bits (62), Expect = 8.9 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = +1 Query: 1 ILTGNPNFNMQSSPGGSTPKDK---DAPRSPTPSAPGSQGQGAATRDKGNKKSKVV 159 ILT + SP ST K + R PTPS P Q + TR+K + S +V Sbjct: 801 ILTSKKQGSSVFSPSSSTTKPQIKTTGYRQPTPSPPLPQMEFPTTREKYSAPSNMV 856
>NBEA_MOUSE (Q9EPN1) Protein neurobeachin (Lysosomal trafficking regulator 2)| Length = 2936 Score = 28.5 bits (62), Expect = 8.9 Identities = 26/90 (28%), Positives = 39/90 (43%) Frame = -2 Query: 377 LLVPLDVAPKLSLLVMTTLTMFSGSGLLRGWTTTEEVACGCTDDPFFLQKSTTAPSDSND 198 ++VP+ P SL V T +GSGL G T++ A G T +TT DS Sbjct: 1781 VVVPVKKPPPGSLAVTTVGATAAGSGLPTGSTSSIFAAPGATPKSMI---NTTGAVDSGS 1837 Query: 197 TTPIATGIVVASDTTLLFLFPLSRVAAPWP 108 ++ ++ V T+ P + AP P Sbjct: 1838 SSSSSSSSFVNGATSK--NLPAVQTVAPMP 1865 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.122 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,689,804 Number of Sequences: 219361 Number of extensions: 1351039 Number of successful extensions: 5236 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 4825 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5217 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)