ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet30b12 |
|---|---|
| Clone Library Name | barley_pub |
>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor| Length = 910 Score = 34.7 bits (78), Expect = 0.14 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = -1 Query: 473 DVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEVLEE 294 + E D P+G+ G S +G E + + GG + G +E GED+ GA EE Sbjct: 337 ETENDSPEGQVSGMSEEGLA--EASSEEEGGEEDGSENGEVPFKEESGEDSGDGASSEEE 394 Query: 293 G 291 G Sbjct: 395 G 395
>VID30_YEAST (P53076) Vacuolar import and degradation protein VID30| (Glucose-induced degradation protein 1) Length = 958 Score = 33.1 bits (74), Expect = 0.41 Identities = 17/57 (29%), Positives = 29/57 (50%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGA 309 D+D + D+ D + S++GEVD + D G + H+ G + G DA+V + Sbjct: 175 DDDDDDDDDDDESDLESLEGEVDTDTDDNNEGDGSDNHEEGGEE--GSRGADADVSS 229
>MCH1_YARLI (Q6CGU8) Probable transporter MCH1| Length = 486 Score = 32.3 bits (72), Expect = 0.70 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%) Frame = +3 Query: 174 TVFASFAILTASGATY-IFSIYSKTLKSSLGYNQQTLNTISFFKDLGANL 320 ++FA + T S A+ +FS+Y +TL+ LG+ Q +N++S LG L Sbjct: 30 SIFALSILGTLSAASISLFSMYGQTLQHKLGFTQVQVNSVSISSLLGMYL 79
>CD2L1_MOUSE (P24788) PITSLRE serine/threonine-protein kinase CDC2L1 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1) Length = 784 Score = 32.3 bits (72), Expect = 0.70 Identities = 22/86 (25%), Positives = 41/86 (47%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEVL 300 +E+ E +E +G S + E + E ++ G+N E + E D E+ + Sbjct: 295 EEEEEEEEEEGSTSEESEEEEEEEEEEEEEETGSNSEEASEQSA---EEVSDEEMSED-- 349 Query: 299 EEGDGVERLLVVPQRRLERLGVDAED 222 E+ + +LVVP+ R +R D+E+ Sbjct: 350 EDRENENHILVVPESRFDRDSGDSEE 375
>IE68_PRVKA (P24827) Immediate-early protein RSP40| Length = 364 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/65 (33%), Positives = 27/65 (41%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAE 306 G DED + DE + G + E D E D G +GE D DE GE E G + Sbjct: 298 GEDEDEDEDEDEDEDDG---EDEEDEEGEDGGEDGEDGEEDE------DEDGEGEEGGKD 348 Query: 305 VLEEG 291 G Sbjct: 349 AARRG 353
>MCH1_ASPFU (Q4WVT3) Probable transporter mch1| Length = 619 Score = 31.2 bits (69), Expect = 1.6 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Frame = +3 Query: 207 SGATYIFSIYSKTLKSSLGYNQQTLNTISFFKDLGANLGV--FSRLINEVTPPXVVLAIG 380 +G+ FS+Y + L Y+Q +N +S ++ L V F L + TP + L G Sbjct: 94 AGSITAFSLYGPLFLTRLHYSQLQVNAVSIAAEISMYLPVPLFGYLCDRYTPSPLALLSG 153 Query: 381 AAMNLVGYLMVYLAV-------DGRTXRPPVWLVCLYIFIG 482 GYL+ A G PP +V ++ IG Sbjct: 154 LVFG-GGYLLAAFAYRSGPLPEAGGEGWPPWVMVVAFVAIG 193
>SPX_LACLC (P60376) Regulatory protein spx| Length = 132 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -1 Query: 353 RDLVDEPGEDAEVGAEVLEEGDGVERLLVVPQRRLERLGVDAEDV 219 R+L+ +P E+ + + DGVE L+ R ++ LGVD ED+ Sbjct: 30 RNLIADPLSTTEISQILQKCDDGVEGLISSRNRFVKTLGVDFEDI 74
>SPX2_LACLA (P60375) Regulatory protein spx 2 (Thermoresistant insertional| mutant protein A) Length = 132 Score = 30.8 bits (68), Expect = 2.0 Identities = 16/45 (35%), Positives = 26/45 (57%) Frame = -1 Query: 353 RDLVDEPGEDAEVGAEVLEEGDGVERLLVVPQRRLERLGVDAEDV 219 R+L+ +P E+ + + DGVE L+ R ++ LGVD ED+ Sbjct: 30 RNLIADPLSTTEISQILQKCDDGVEGLISSRNRFVKTLGVDFEDI 74
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 30.4 bits (67), Expect = 2.7 Identities = 32/95 (33%), Positives = 37/95 (38%), Gaps = 2/95 (2%) Frame = -1 Query: 488 VGADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPG-EDAEVG 312 V AD DV+ P GRA + V H DEP AE Sbjct: 656 VQADADVDVVVPHGRAVRGPVLDGVQH----------------------DEPAPRRAEPR 693 Query: 311 AEVLEEGDGVERLLVVPQRRLER-LGVDAEDVGRP 210 AEVL E VP+R + LGV+A DVG P Sbjct: 694 AEVLHGAGEAE----VPRREQQHPLGVEAADVGAP 724
>SPBP_RAT (P08723) Prostatic spermine-binding protein precursor (SBP)| Length = 279 Score = 30.4 bits (67), Expect = 2.7 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGED 324 D D E D+ DG G D + + + D GG+ + D G D D+ G+D Sbjct: 221 DNDKENDKDDGEGSGDDDDNDDEDDDKDD-DGGSGDDGDDGDDDEDDDGGDD 271
>CD2L1_HUMAN (P21127) PITSLRE serine/threonine-protein kinase CDC2L1 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 1) (CLK-1) (CDK11) (p58 CLK-1) Length = 795 Score = 30.4 bits (67), Expect = 2.7 Identities = 20/88 (22%), Positives = 40/88 (45%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAE 306 G++E+ E +E + S + E + E ++ + +E E+ E+ + Sbjct: 302 GSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEE-EMSED 360 Query: 305 VLEEGDGVERLLVVPQRRLERLGVDAED 222 EE + LLVVP+ R +R ++E+ Sbjct: 361 --EERENENHLLVVPESRFDRDSGESEE 386
>CD2L2_HUMAN (Q9UQ88) PITSLRE serine/threonine-protein kinase CDC2L2 (EC| 2.7.11.22) (Galactosyltransferase-associated protein kinase p58/GTA) (Cell division cycle 2-like protein kinase 2) (CDK11) Length = 780 Score = 30.0 bits (66), Expect = 3.5 Identities = 21/88 (23%), Positives = 39/88 (44%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAE 306 G++E+ E +E + S + E + E ++ G + E + V E + Sbjct: 290 GSEEEEEEEEEEEEEGSTSEESEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED---- 345 Query: 305 VLEEGDGVERLLVVPQRRLERLGVDAED 222 EE + LLVVP+ R +R ++E+ Sbjct: 346 --EERENENHLLVVPESRFDRDSGESEE 371
>GBX2_HUMAN (P52951) Homeobox protein GBX-2 (Gastrulation and brain-specific| homeobox protein 2) Length = 348 Score = 30.0 bits (66), Expect = 3.5 Identities = 15/59 (25%), Positives = 26/59 (44%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGA 309 G DE D+P G+ S++ +VD+ D + G A + + L + P G+ Sbjct: 182 GKDESKVEDDPKGKEESFSLESDVDYSSDDNLTGQAAHKEEDPGHALEETPPSSGAAGS 240
>SANT_PLAF7 (Q03400) S-antigen protein precursor| Length = 585 Score = 29.6 bits (65), Expect = 4.5 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGED 324 G +++V D + G + EV + DKV G E GR D V GED Sbjct: 476 GGEDEVSNGREDKVSNGG--EDEVSNGREDKVSNGGEDEVSNGREDKVSNGGED 527 Score = 29.6 bits (65), Expect = 4.5 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGED 324 G +++V D + G + EV + DKV G E GR D V GED Sbjct: 140 GGEDEVSNGREDKVSNGG--EDEVSNGREDKVSNGGEDEVSNGREDKVSNGGED 191 Score = 29.3 bits (64), Expect = 5.9 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGED 324 G +++V D + G + EV + DKV G E GR D V GED Sbjct: 268 GGEDEVSNGREDKVSNGR--EDEVSNGREDKVSNGGEDEVSNGREDKVSNGGED 319
>CIA1_SCHPO (O74515) Histone chaperone cia1| Length = 262 Score = 29.6 bits (65), Expect = 4.5 Identities = 21/63 (33%), Positives = 29/63 (46%) Frame = -1 Query: 482 ADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEV 303 ADE+ E +E D +GE D E ++ G +GE D D GE+ G+E Sbjct: 174 ADEEEEEEEADEMEEEFDEEGEGDEEEEEEDDGDGDGEGDG------DGEGENDGKGSEE 227 Query: 302 LEE 294 EE Sbjct: 228 EEE 230 Score = 28.9 bits (63), Expect = 7.7 Identities = 18/62 (29%), Positives = 26/62 (41%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEVL 300 DE+ E DE + DGE D + + G + E + D+ +E E A A Sbjct: 191 DEEGEGDEEEEEEDDGDGDGEGDGDGEGENDGKGSEEEEEEEIDIEEEEEESALANASAA 250 Query: 299 EE 294 EE Sbjct: 251 EE 252
>YM30_YEAST (Q03795) Hypothetical 60.0 kDa protein in IMP1-HLJ1 intergenic| region Length = 547 Score = 29.6 bits (65), Expect = 4.5 Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Frame = +3 Query: 195 ILTASGATYIFSIYSKTLKSSLGYNQQTLNTISFFKDLGANL-GVFSRLINEVTPPXVVL 371 + +G Y+FS Y+ L S + +SF +G++L G+ + ++ + +P L Sbjct: 28 VALGAGTPYLFSFYAPQLLSKCHIPVSASSKLSFSLTIGSSLMGILAGIVVDRSPKLSCL 87 Query: 372 AIGAAMNLVGYLMVYL 419 IG+ + YL++ L Sbjct: 88 -IGSMCVFIAYLILNL 102
>UVRC_MYCPA (Q741E5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 647 Score = 29.6 bits (65), Expect = 4.5 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = -1 Query: 482 ADEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEV 303 AD+++EA G + G+ V G +GE + L GE AE+G Sbjct: 263 ADDELEAAVQVFHVRGGRVRGQRGWIVEKSADPGDSGEEQLVEQFLTQFYGEQAELGGAA 322 Query: 302 LEEGDGVERLLVVP 261 E + V R ++VP Sbjct: 323 DESVNPVPREVLVP 336
>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) (hHYD) (Progestin-induced protein) Length = 2799 Score = 29.3 bits (64), Expect = 5.9 Identities = 19/55 (34%), Positives = 26/55 (47%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEV 315 D+ V AD + + GE DH + HG N E + G+ D DE G D E+ Sbjct: 1562 DDIVSADVEEVEVV-EGVAGEEDHHDEQEEHGEENAEAE-GQHDEHDEDGSDMEL 1614
>CO3_HUMAN (P01024) Complement C3 precursor [Contains: Complement C3 beta chain;| Complement C3 alpha chain; C3a anaphylatoxin; Complement C3b alpha' chain; Complement C3c fragment; Complement C3dg fragment; Complement C3g fragment; Complement C3d fragment Length = 1663 Score = 29.3 bits (64), Expect = 5.9 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = -2 Query: 310 PRSLKKEMVLSVCWLYPSDD---LSVLE*MLKM*VAPDAVRMAKLANTVN 170 P+ K M+L +C Y D +S+L+ + APD + +LAN V+ Sbjct: 1377 PQDAKNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVD 1426
>Y745_HELPY (O25441) Hypothetical RNA pseudouridine synthase HP0745 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 29.3 bits (64), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 325 TPRLAPRSLKKEMVLSVCWLYPSDDLSVL 239 TP++ P+ LKKE+ L + ++ +DL VL Sbjct: 62 TPKITPKPLKKELDLEIEVIFEDEDLLVL 90
>Y745_HELPJ (Q9ZL98) Hypothetical RNA pseudouridine synthase jhp_0682 (EC| 5.4.99.-) (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 327 Score = 29.3 bits (64), Expect = 5.9 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = -2 Query: 325 TPRLAPRSLKKEMVLSVCWLYPSDDLSVL 239 TP++ P+ LKKE+ L + ++ +DL VL Sbjct: 62 TPKIVPKPLKKELDLEIEVIFEDEDLLVL 90
>PASK_HUMAN (Q96RG2) PAS domain-containing serine/threonine-protein kinase (EC| 2.7.11.1) (PAS-kinase) (PASKIN) (hPASK) Length = 1323 Score = 29.3 bits (64), Expect = 5.9 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -2 Query: 382 APMASTTQGGVTSLMSLEKTPRLAPRSLKKEMVLSVCWL 266 +P+ S G V + + EK + + +KKE VL CW+ Sbjct: 1003 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWI 1041
>SCN3A_RAT (P08104) Sodium channel protein type 3 alpha subunit (Sodium channel| protein type III alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.3) (Sodium channel protein, brain III alpha subunit) (Voltage-gated sodium channel subtype III Length = 1951 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +3 Query: 168 WFTVFASFAILTASGATYIFSIY---SKTLKSSLGYNQQTLNTI 290 WF F F IL +SGA IY KT+K+ L Y + I Sbjct: 1158 WFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYI 1201
>SWR1_ASPFU (Q4WAS9) Helicase swr1 (EC 3.6.1.-)| Length = 1695 Score = 28.9 bits (63), Expect = 7.7 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 11/79 (13%) Frame = -1 Query: 485 GADEDVEADEPDGRAXGAS-----------IDGEVDHEVADKVHGGANGEHDXGRRDLVD 339 G D D E+D+ G S D E D +A H G +G D G+ VD Sbjct: 607 GTDSDDESDDGPGLLGFFSSKDRVLNDAHRFDDEGDDPLAVSNHEGGSGFDDDGQSVSVD 666 Query: 338 EPGEDAEVGAEVLEEGDGV 282 E G+ E LE+ D V Sbjct: 667 EDGD------EELEDADEV 679
>SCN3A_HUMAN (Q9NY46) Sodium channel protein type 3 alpha subunit (Sodium channel| protein type III alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.3) (Sodium channel protein, brain III alpha subunit) (Voltage-gated sodium channel subtype I Length = 2000 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +3 Query: 168 WFTVFASFAILTASGATYIFSIY---SKTLKSSLGYNQQTLNTI 290 WF F F IL +SGA IY KT+K+ L Y + I Sbjct: 1207 WFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYI 1250
>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) Length = 2792 Score = 28.9 bits (63), Expect = 7.7 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEV 315 D+ V AD + + GE DH + HG N E + G D DE G D E+ Sbjct: 1556 DDIVSADVEEVEVV-EGVAGEEDHHDEQEEHGEENAEAE-GHHDEHDEDGSDMEL 1608
>SCN1A_RAT (P04774) Sodium channel protein type 1 alpha subunit (Sodium channel| protein type I alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.1) (Sodium channel protein, brain I alpha subunit) Length = 2009 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +3 Query: 168 WFTVFASFAILTASGATYIFSIY---SKTLKSSLGYNQQTLNTI 290 WF F F IL +SGA IY KT+K+ L Y + I Sbjct: 1219 WFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYI 1262
>SCN1A_HUMAN (P35498) Sodium channel protein type 1 alpha subunit (Sodium channel| protein type I alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.1) (Sodium channel protein, brain I alpha subunit) Length = 2009 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +3 Query: 168 WFTVFASFAILTASGATYIFSIY---SKTLKSSLGYNQQTLNTI 290 WF F F IL +SGA IY KT+K+ L Y + I Sbjct: 1219 WFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYI 1262
>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/75 (22%), Positives = 34/75 (45%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEVL 300 D+D + DE DG A D +D E+A + ++ R + + A E+L Sbjct: 193 DDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEIL 252 Query: 299 EEGDGVERLLVVPQR 255 + + ++ +VP++ Sbjct: 253 KLSEVFKQFRLVPKQ 267
>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 615 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/75 (22%), Positives = 34/75 (45%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEVL 300 D+D + DE DG A D +D E+A + ++ R + + A E+L Sbjct: 193 DDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHAAAQEEIL 252 Query: 299 EEGDGVERLLVVPQR 255 + + ++ +VP++ Sbjct: 253 KLSEVFKQFRLVPKQ 267
>SCN2A_RAT (P04775) Sodium channel protein type 2 alpha subunit (Sodium channel| protein type II alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.2) (Sodium channel protein, brain II alpha subunit) Length = 2005 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +3 Query: 168 WFTVFASFAILTASGATYIFSIY---SKTLKSSLGYNQQTLNTI 290 WF F F IL +SGA IY KT+K+ L Y + I Sbjct: 1209 WFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYI 1252
>SCN2A_HUMAN (Q99250) Sodium channel protein type 2 alpha subunit (Sodium channel| protein type II alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.2) (Sodium channel protein, brain II alpha subunit) (HBSC II) Length = 2005 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = +3 Query: 168 WFTVFASFAILTASGATYIFSIY---SKTLKSSLGYNQQTLNTI 290 WF F F IL +SGA IY KT+K+ L Y + I Sbjct: 1209 WFETFIVFMILLSSGALAFEDIYIEQRKTIKTMLEYADKVFTYI 1252
>SSPN_HUMAN (Q14714) Sarcospan (K-ras oncogene-associated protein)| (Kirsten-ras-associated protein) Length = 243 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%) Frame = +3 Query: 369 LAIGAAMNLVGYLMVYLAVDGRTXRPPVW---LVCLYIFIG 482 LA+G A+ +VG+LM ++ P W +VCL ++G Sbjct: 61 LALGIAVTVVGFLMASISSSLLVRDTPFWAGIIVCLVAYLG 101
>RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70)| Length = 613 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/75 (22%), Positives = 34/75 (45%) Frame = -1 Query: 479 DEDVEADEPDGRAXGASIDGEVDHEVADKVHGGANGEHDXGRRDLVDEPGEDAEVGAEVL 300 D+D + DE DG A D +D E+A + ++ R + + A E+L Sbjct: 191 DDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEIL 250 Query: 299 EEGDGVERLLVVPQR 255 + + ++ +VP++ Sbjct: 251 KLSEVFKQFRLVPKQ 265 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,144,384 Number of Sequences: 219361 Number of extensions: 675218 Number of successful extensions: 2647 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 2571 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2642 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
