ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet29g05 |
|---|---|
| Clone Library Name | barley_pub |
>ATG13_EMENI (Q5BBK4) Autophagy-related protein 13| Length = 974 Score = 29.3 bits (64), Expect = 2.6 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = -1 Query: 159 GTEDRRSWGRVAGRGKHDL 103 GTEDRR GR +G G+H+L Sbjct: 894 GTEDRRGTGRGSGGGRHNL 912
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 29.3 bits (64), Expect = 2.6 Identities = 20/58 (34%), Positives = 26/58 (44%) Frame = +1 Query: 1 THARTRRTQKPEEHKKDYQDASIPRLLDPSESMLQVMLPAPSDATPAPPVLGSGSEDE 174 T RTR + E K D+S+P+L PS ++ P PA P L GS E Sbjct: 2177 TPTRTRHDEYLEVTKAPSLDSSLPQLPSPSSPGGPLLSNLP---RPASPALSEGSSSE 2231
>CAP1_ARATH (Q8S9J8) Putative clathrin assembly protein At4g32285| Length = 635 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/46 (30%), Positives = 22/46 (47%) Frame = +1 Query: 10 RTRRTQKPEEHKKDYQDASIPRLLDPSESMLQVMLPAPSDATPAPP 147 R +R + PE + + A P + +P + LP P + TP PP Sbjct: 356 RAKRAKSPERKEIEAPPAPAPPVEEPVDMNEIKALPPPENHTPPPP 401
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/51 (29%), Positives = 22/51 (43%) Frame = -3 Query: 217 APARPTASSCGGGITRPRCRNRGQEELGSRRWAREA*PGAWIRKDRVGEEC 65 A R + SCGG TR R + G R +++ P W+ + G C Sbjct: 1874 ARCRSRSGSCGGPTTRGRRFSAGSRGRRGARASQDDWPRDWVALEACGSAC 1924
>MAP1A_HUMAN (P78559) Microtubule-associated protein 1A (MAP 1A)| (Proliferation-related protein p80) [Contains: MAP1 light chain LC2] Length = 2805 Score = 28.5 bits (62), Expect = 4.4 Identities = 19/55 (34%), Positives = 25/55 (45%) Frame = +1 Query: 10 RTRRTQKPEEHKKDYQDASIPRLLDPSESMLQVMLPAPSDATPAPPVLGSGSEDE 174 RTR + E K D+S+P+L PS ++ P PA P L GS E Sbjct: 2211 RTRYDEYLEVTKAPSLDSSLPQLPSPSSPGXPLLSNLP---RPASPALSEGSSSE 2262
>RNF25_BOVIN (Q5E9N3) RING finger protein 25 (EC 6.3.2.-)| Length = 458 Score = 28.5 bits (62), Expect = 4.4 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +3 Query: 108 HASRAQRRDPSSSCPRF-RQRGRVMPPPQEDAV 203 H RA+ R P+SS PR R RG P P+ + V Sbjct: 418 HWERAKNRTPASSYPRLPRGRGAYRPGPRREPV 450
>NFYB1_ORYSA (Q6Z348) Nuclear transcription factor Y subunit B-1 (OsNF-YB-1)| (CCAAT-binding transcription factor subunit NF-YB1) Length = 186 Score = 28.5 bits (62), Expect = 4.4 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 13/60 (21%) Frame = +1 Query: 7 ARTRRTQKPEEHKKDYQDASIPRLLDPSESML-------------QVMLPAPSDATPAPP 147 A RRT PE++ + D R +DP ++ + +V P P+ ATP P Sbjct: 82 AEHRRTVAPEDYLGSFGDLGFDRYVDPMDAYIHGYREFERAGGNRRVAPPPPAAATPLTP 141
>RU17_DROME (P17133) U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70| kDa) (snRNP70) Length = 448 Score = 28.1 bits (61), Expect = 5.8 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = +1 Query: 49 DYQDASIPRLLDPSESMLQVMLPAPSD--ATPAPPVLGSGS 165 DYQ+A+I R +D + PA + + P PP+LG G+ Sbjct: 386 DYQNATIKREIDDEDEEKYRPPPAHHNMFSVPPPPILGRGN 426
>MTM4_NEIGO (P31033) Modification methylase NgoMIV (EC 2.1.1.37)| (Cytosine-specific methyltransferase NgoMIV) (M.NgoMIV) Length = 312 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +3 Query: 150 PRFRQRGRVMPPPQEDAVGR 209 P +RQ G PPP +AVGR Sbjct: 283 PMYRQIGNAFPPPVAEAVGR 302
>VE2_BPV3 (Q8BDD6) Regulatory protein E2| Length = 414 Score = 27.7 bits (60), Expect = 7.5 Identities = 20/52 (38%), Positives = 25/52 (48%) Frame = +3 Query: 18 KNTETRGA*ERLPRCKHSSPTRSFRIHAPGHASRAQRRDPSSSCPRFRQRGR 173 + +TRG PR K +S RS + SR + R PSSS R R R R Sbjct: 211 RGPQTRGH----PRHKSASFRRSASSGSDTRDSRGRSRSPSSSRSRSRSRSR 258
>CI040_HUMAN (Q8IXQ3) Protein C9orf40| Length = 194 Score = 27.7 bits (60), Expect = 7.5 Identities = 21/70 (30%), Positives = 29/70 (41%) Frame = +1 Query: 25 QKPEEHKKDYQDASIPRLLDPSESMLQVMLPAPSDATPAPPVLGSGSEDE*CRHRKKMRW 204 Q+ E+H + D +P +LP P + P + G G +D R Sbjct: 85 QEREDHGLETGDPPLPP---------PPVLPGPGEELPGARLPGGGGDDGAGR------- 128 Query: 205 AGPERGDRGV 234 AGP RGD GV Sbjct: 129 AGPPRGDWGV 138
>TM115_HUMAN (Q12893) Transmembrane protein 115 (Protein PL6) (Placental protein| 6) (PP6) Length = 351 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = +1 Query: 37 EHKKDYQDASIPRLLDPSE--SMLQVMLPAPSDATPAPPVLGSGSE 168 E K +D SI +D E S +V P PSD P PP G+ E Sbjct: 293 ERLKRVEDQSIWPSMDDDEEESGAKVDSPLPSDKAPTPPGKGAAPE 338
>DEAF1_PANTR (O77562) Deformed epidermal autoregulatory factor 1 homolog| (Nuclear DEAF-1-related transcriptional regulator) (NUDR) Length = 565 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Frame = +1 Query: 19 RTQKPEEHKKDYQD----ASIPRLLDPSE-------SMLQVMLPAPSDATPAPPVLGSGS 165 R PE H YQD A P P+ S+ + +P P+ APP L +G Sbjct: 386 RASHPEPHYPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGL 445 Query: 166 E 168 E Sbjct: 446 E 446
>DEAF1_HUMAN (O75398) Deformed epidermal autoregulatory factor 1 homolog| (Nuclear DEAF-1-related transcriptional regulator) (NUDR) (Suppressin) (Zinc finger MYND domain-containing protein 5) Length = 565 Score = 27.3 bits (59), Expect = 9.9 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Frame = +1 Query: 19 RTQKPEEHKKDYQD----ASIPRLLDPSE-------SMLQVMLPAPSDATPAPPVLGSGS 165 R PE H YQD A P P+ S+ + +P P+ APP L +G Sbjct: 386 RASHPEPHYPGYQDSCQIAPFPEAALPTSHPKIVLTSLPALAVPPPTPTKAAPPALVNGL 445 Query: 166 E 168 E Sbjct: 446 E 446
>COQ9_BOVIN (Q2NL34) Ubiquinone biosynthesis protein COQ9, mitochondrial| precursor Length = 319 Score = 27.3 bits (59), Expect = 9.9 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%) Frame = +3 Query: 51 LPRCKHSSPTRSFRIHAPGHASRAQRRD---PSSSCPRFRQRGRVMPPPQ 191 +PRC+ + R+FR A S Q++D PSSS + +G P P+ Sbjct: 26 VPRCRPALAPRAFRASAMQLRSLDQQKDQPPPSSSQQQSEAQGAEEPNPE 75
>CWC25_CRYNE (Q5KIP8) Pre-mRNA-splicing factor CWC25| Length = 434 Score = 27.3 bits (59), Expect = 9.9 Identities = 20/58 (34%), Positives = 27/58 (46%) Frame = +3 Query: 18 KNTETRGA*ERLPRCKHSSPTRSFRIHAPGHASRAQRRDPSSSCPRFRQRGRVMPPPQ 191 +N TRG+ + PR + S H P R+ RD R RQRG +PPP+ Sbjct: 271 RNDTTRGSFDESPRKGGGNRWGS---HGPDGYRRSDHRDDGF---RERQRGDRIPPPR 322
>BTUC_ECO57 (Q8X4L7) Vitamin B12 import system permease protein btuC| Length = 326 Score = 27.3 bits (59), Expect = 9.9 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = -1 Query: 96 GFGRIE*ARNACILVIFLMLLWFLCSSR 13 GFG ++ ++ +L + MLLW C SR Sbjct: 182 GFGGVDWRQSWLMLALIPMLLWICCQSR 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,980,304 Number of Sequences: 219361 Number of extensions: 869572 Number of successful extensions: 3072 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2916 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3069 length of database: 80,573,946 effective HSP length: 82 effective length of database: 62,586,344 effective search space used: 1502072256 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
