ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet29f05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 1.5
2emb|AL132979.2|ATT3A5 Arabidopsis thaliana DNA chromosome 3, BAC... 36 5.7
3gb|AY190959.1| Drosophila willistoni clone DWIF01_5_H09 (D1414) ... 36 5.7
4dbj|AK200643.1| Mus musculus cDNA, clone:Y1G0135F10, strand:unsp... 36 5.7
5dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 36 5.7

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 1.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 10      gcgaacgccagccacgagc 28
               |||||||||||||||||||
Sbjct: 4619606 gcgaacgccagccacgagc 4619588



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>emb|AL132979.2|ATT3A5 Arabidopsis thaliana DNA chromosome 3, BAC clone T3A5
          Length = 84196

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 26   agcgagaagctagctaga 43
            ||||||||||||||||||
Sbjct: 8042 agcgagaagctagctaga 8025



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>gb|AY190959.1| Drosophila willistoni clone DWIF01_5_H09 (D1414) genomic sequence
          Length = 38059

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 3   cagaccagcgaacgccag 20
           ||||||||||||||||||
Sbjct: 122 cagaccagcgaacgccag 139



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>dbj|AK200643.1| Mus musculus cDNA, clone:Y1G0135F10, strand:unspecified
          Length = 324

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 7   ccagcgaacgccagccac 24
           ||||||||||||||||||
Sbjct: 88  ccagcgaacgccagccac 105



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 36.2 bits (18), Expect = 5.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 5       gaccagcgaacgccagcc 22
               ||||||||||||||||||
Sbjct: 6686191 gaccagcgaacgccagcc 6686174


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 203,877
Number of Sequences: 3902068
Number of extensions: 203877
Number of successful extensions: 34097
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34009
Number of HSP's gapped (non-prelim): 88
length of query: 46
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 26
effective length of database: 17,155,003,908
effective search space: 446030101608
effective search space used: 446030101608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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