>RFNG_CHICK (O12972) Beta-1,3-N-acetylglucosaminyltransferase radical fringe|
           (EC 2.4.1.222) (O-fucosylpeptide
           3-beta-N-acetylglucosaminyltransferase)
          Length = 372

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 22/56 (39%), Positives = 27/56 (48%)
 Frame = -3

Query: 395 LPLPRSELPWAPVARRPPMVSPYQ*GECGSASPGGHELLLGAGERGVGRAADGAVR 228
           L LPR + P AP  RRPP   P +      A P G ++    G+RG G  A G  R
Sbjct: 25  LLLPRGQPPAAP-RRRPPPAGPSRPSPKREARPAGSDV---PGDRGGGSGAAGGGR 76

>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = -1

Query: 394 CPCPAASCRGHPLRGGPRW 338
           C CPA     H +  GPRW
Sbjct: 597 CACPACQTEAHRMAAGPRW 615

>DOF43_ARATH (Q9SUB0) Hypothetical Dof zinc finger protein DOF4.3 (AtDOF4.3)|
          Length = 232

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +3

Query: 147 VSSPPPEPVECARGTSDCT---VTNVYGSFPDRTICR 248
           V  PPP P  CAR  SD T     N Y  F  R  C+
Sbjct: 17  VKPPPPPPRVCARCDSDNTKFCYYNNYSEFQPRYFCK 53

>CAC1B_RAT (Q02294) Voltage-dependent N-type calcium channel alpha-1B subunit|
           (Voltage-gated calcium channel alpha subunit Cav2.2)
           (Calcium channel, L type, alpha-1 polypeptide isoform 5)
           (Brain calcium channel III) (BIII)
          Length = 2336

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 199 QSDVPRAHSTGSGGGLDTARPRKSTRRE 116
           ++D P+A ST +G   + ARPR+S  +E
Sbjct: 873 RTDCPKAESTETGAREERARPRRSHSKE 900

>COX11_YEAST (P19516) Cytochrome c oxidase assembly protein COX11, mitochondrial|
           precursor
          Length = 300

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 81  RAMTERSRAFTFS-LLVLFLGLAVSSPPPEPVECAR 185
           R   +R+ AF FS + VLFLGLA ++ P     CAR
Sbjct: 78  RKFKDRTVAFYFSSVAVLFLGLAYAAVPLYRAICAR 113

>CDKL5_HUMAN (O76039) Cyclin-dependent kinase-like 5 (EC 2.7.11.22)|
            (Serine/threonine-protein kinase 9)
          Length = 1030

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 147  VSSPPPEPVECARGTSDCTVTNVYGS 224
            +SSP P PV   RGTS C    V G+
Sbjct: 958  ISSPAPYPVLQVRGTSMCPTLQVRGT 983

>DOF45_ARATH (O49550) Hypothetical Dof zinc finger protein DOF4.5 (AtDOF4.5)|
          Length = 249

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +3

Query: 147 VSSPPPEPVECARGTSDCT---VTNVYGSFPDRTICR 248
           V  PPP P  CAR  SD T     N Y  F  R  C+
Sbjct: 17  VKPPPPPPRVCARCDSDNTKFCYYNNYCEFQPRYFCK 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,997,951
Number of Sequences: 219361
Number of extensions: 744903
Number of successful extensions: 2722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2720
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 1359926328
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)