ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet29e08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479769.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2059 Score = 125 bits (63), Expect = 1e-25 Identities = 93/103 (90%) Strand = Plus / Plus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct: 469 ctcgcgctgccgcactcgccctactggtacggcctcaccgtcggcggcctcctcgccacc 528 Query: 361 ggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||| ||||||||||| |||||||||| |||||||||| Sbjct: 529 ggcgcccatggcagctcgctctggggcaagggtagcgccgtgc 571 Score = 113 bits (57), Expect = 4e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 193 ccgactgcaccgtcaccaacgtgtacggctccttcccggaccgcaccatctgccgcgcgg 252 |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 149 ccgactgcacggtgaccaacgtgtacggctccttccccgaccgcaccatctgccgcgccg 208 Query: 253 ccaacgccacgttcccccgcaccgagaaggagctcgtggccgccg 297 || |||| ||||||| ||||| ||| |||||||||||| |||| Sbjct: 209 ccgacgcgtcgttcccgcgcacggaggcggagctcgtggcggccg 253
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 125 bits (63), Expect = 1e-25 Identities = 93/103 (90%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct: 763994 ctcgcgctgccgcactcgccctactggtacggcctcaccgtcggcggcctcctcgccacc 763935 Query: 361 ggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||| ||||||||||| |||||||||| |||||||||| Sbjct: 763934 ggcgcccatggcagctcgctctggggcaagggtagcgccgtgc 763892 Score = 113 bits (57), Expect = 4e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 193 ccgactgcaccgtcaccaacgtgtacggctccttcccggaccgcaccatctgccgcgcgg 252 |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 764314 ccgactgcacggtgaccaacgtgtacggctccttccccgaccgcaccatctgccgcgccg 764255 Query: 253 ccaacgccacgttcccccgcaccgagaaggagctcgtggccgccg 297 || |||| ||||||| ||||| ||| |||||||||||| |||| Sbjct: 764254 ccgacgcgtcgttcccgcgcacggaggcggagctcgtggcggccg 764210 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 ||||| ||||||||| ||||||||||| || |||||| |||| ||||||||| | || Sbjct: 25763841 ctcgctctgccgcacgcgccctactggctcgacctcaccgtcggcggcctcctctccacc 25763782 Query: 361 ggtgcccacggcagctcg 378 || ||||||||||||||| Sbjct: 25763781 ggcgcccacggcagctcg 25763764
>dbj|AP005657.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0427G12 Length = 185545 Score = 125 bits (63), Expect = 1e-25 Identities = 93/103 (90%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct: 63214 ctcgcgctgccgcactcgccctactggtacggcctcaccgtcggcggcctcctcgccacc 63155 Query: 361 ggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||| ||||||||||| |||||||||| |||||||||| Sbjct: 63154 ggcgcccatggcagctcgctctggggcaagggtagcgccgtgc 63112 Score = 113 bits (57), Expect = 4e-22 Identities = 93/105 (88%) Strand = Plus / Minus Query: 193 ccgactgcaccgtcaccaacgtgtacggctccttcccggaccgcaccatctgccgcgcgg 252 |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 63534 ccgactgcacggtgaccaacgtgtacggctccttccccgaccgcaccatctgccgcgccg 63475 Query: 253 ccaacgccacgttcccccgcaccgagaaggagctcgtggccgccg 297 || |||| ||||||| ||||| ||| |||||||||||| |||| Sbjct: 63474 ccgacgcgtcgttcccgcgcacggaggcggagctcgtggcggccg 63430
>dbj|AK105866.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-A07, full insert sequence Length = 2059 Score = 125 bits (63), Expect = 1e-25 Identities = 93/103 (90%) Strand = Plus / Plus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 |||||||||||||||||||||||||||||||| |||||| |||| ||||||||||| || Sbjct: 469 ctcgcgctgccgcactcgccctactggtacggcctcaccgtcggcggcctcctcgccacc 528 Query: 361 ggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||| ||||||||||| |||||||||| |||||||||| Sbjct: 529 ggcgcccatggcagctcgctctggggcaagggtagcgccgtgc 571 Score = 113 bits (57), Expect = 4e-22 Identities = 93/105 (88%) Strand = Plus / Plus Query: 193 ccgactgcaccgtcaccaacgtgtacggctccttcccggaccgcaccatctgccgcgcgg 252 |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| | Sbjct: 149 ccgactgcacggtgaccaacgtgtacggctccttccccgaccgcaccatctgccgcgccg 208 Query: 253 ccaacgccacgttcccccgcaccgagaaggagctcgtggccgccg 297 || |||| ||||||| ||||| ||| |||||||||||| |||| Sbjct: 209 ccgacgcgtcgttcccgcgcacggaggcggagctcgtggcggccg 253
>gb|AY661656.1| Sorghum bicolor clone BAC 88M4, complete sequence Length = 279448 Score = 107 bits (54), Expect = 3e-20 Identities = 93/106 (87%) Strand = Plus / Plus Query: 298 gggctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgca 357 ||||||||||||||||||||||| |||||| ||| |||||| |||| ||||||||||| Sbjct: 64896 gggctcgcgctgccgcactcgccgtactggagcgggctcaccgtcggtggcctcctcgcc 64955 Query: 358 acgggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || || |||||||| ||||||||| ||||||| || |||||||||| Sbjct: 64956 accggcgcccacgggagctcgctgtggggcaaagggagcgccgtgc 65001 Score = 65.9 bits (33), Expect = 9e-08 Identities = 33/33 (100%) Strand = Plus / Plus Query: 218 cggctccttcccggaccgcaccatctgccgcgc 250 ||||||||||||||||||||||||||||||||| Sbjct: 64598 cggctccttcccggaccgcaccatctgccgcgc 64630
>ref|XM_472087.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1773 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 296 cggggctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcg 355 ||||||||||||||||||||||||| ||||||| || ||||| ||||| ||| | |||| Sbjct: 452 cggggctcgcgctgccgcactcgccgtactggtcgggcctcacgatcggcggcgtgctcg 511 Query: 356 caacgggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 | ||||| || ||||| ||||||||| |||| ||||| |||||||||| Sbjct: 512 ccacgggcgcgcacgggagctcgctgtgggggaaggggagcgccgtgc 559 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 216 tacggctccttcccggaccgcaccatctgccgcgcggccaacgccacgttcccccgcacc 275 |||||||||||| | |||||| ||||||||||||| ||||||| ||||| ||| |||||| Sbjct: 160 tacggctccttctccgaccgcgccatctgccgcgccgccaacgtcacgtacccgcgcacc 219 Query: 276 gagaaggagctcgt 289 ||| |||||||||| Sbjct: 220 gaggaggagctcgt 233
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 296 cggggctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcg 355 ||||||||||||||||||||||||| ||||||| || ||||| ||||| ||| | |||| Sbjct: 17329816 cggggctcgcgctgccgcactcgccgtactggtcgggcctcacgatcggcggcgtgctcg 17329875 Query: 356 caacgggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 | ||||| || ||||| ||||||||| |||| ||||| |||||||||| Sbjct: 17329876 ccacgggcgcgcacgggagctcgctgtgggggaaggggagcgccgtgc 17329923 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 216 tacggctccttcccggaccgcaccatctgccgcgcggccaacgccacgttcccccgcacc 275 |||||||||||| | |||||| ||||||||||||| ||||||| ||||| ||| |||||| Sbjct: 17329524 tacggctccttctccgaccgcgccatctgccgcgccgccaacgtcacgtacccgcgcacc 17329583 Query: 276 gagaaggagctcgt 289 ||| |||||||||| Sbjct: 17329584 gaggaggagctcgt 17329597 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 197 ctgcaccgtcaccaacgtgtacggctccttcccggaccgcaccatctgccgcgcggccaa 256 |||||| ||||| ||| | |||||||||||||| |||||| || ||||||||||||| Sbjct: 17273059 ctgcacggtcacgaacatctacggctccttccccgaccgcgccgcctgccgcgcggccgg 17273000 Query: 257 cgccacgttcccccgcaccgagaaggagctcgtggccgccg 297 || | ||| ||| ||||||||| ||||||||||||| |||| Sbjct: 17272999 cgtcgcgtacccgcgcaccgaggaggagctcgtggcggccg 17272959 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 296 cggggctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcg 355 ||||||||||||||||||||||||| ||||||| || |||| |||| ||| || | Sbjct: 17272739 cggggctcgcgctgccgcactcgccgtactggtcgggcgtcacggtcggcggcgcgctgg 17272680 Query: 356 caacgggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 | ||||| || ||||| ||||||||| |||| ||||| |||||||||| Sbjct: 17272679 cgacgggcgcgcacgggagctcgctgtgggggaaggggagcgccgtgc 17272632
>emb|AL662967.2|OSJN00166 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0034E24, complete sequence Length = 152220 Score = 95.6 bits (48), Expect = 1e-16 Identities = 93/108 (86%) Strand = Plus / Plus Query: 296 cggggctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcg 355 ||||||||||||||||||||||||| ||||||| || ||||| ||||| ||| | |||| Sbjct: 130040 cggggctcgcgctgccgcactcgccgtactggtcgggcctcacgatcggcggcgtgctcg 130099 Query: 356 caacgggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 | ||||| || ||||| ||||||||| |||| ||||| |||||||||| Sbjct: 130100 ccacgggcgcgcacgggagctcgctgtgggggaaggggagcgccgtgc 130147 Score = 83.8 bits (42), Expect = 4e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 216 tacggctccttcccggaccgcaccatctgccgcgcggccaacgccacgttcccccgcacc 275 |||||||||||| | |||||| ||||||||||||| ||||||| ||||| ||| |||||| Sbjct: 129748 tacggctccttctccgaccgcgccatctgccgcgccgccaacgtcacgtacccgcgcacc 129807 Query: 276 gagaaggagctcgt 289 ||| |||||||||| Sbjct: 129808 gaggaggagctcgt 129821 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Minus Query: 197 ctgcaccgtcaccaacgtgtacggctccttcccggaccgcaccatctgccgcgcggccaa 256 |||||| ||||| ||| | |||||||||||||| |||||| || ||||||||||||| Sbjct: 73283 ctgcacggtcacgaacatctacggctccttccccgaccgcgccgcctgccgcgcggccgg 73224 Query: 257 cgccacgttcccccgcaccgagaaggagctcgtggccgccg 297 || | ||| ||| ||||||||| ||||||||||||| |||| Sbjct: 73223 cgtcgcgtacccgcgcaccgaggaggagctcgtggcggccg 73183 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Minus Query: 296 cggggctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcg 355 ||||||||||||||||||||||||| ||||||| || |||| |||| ||| || | Sbjct: 72963 cggggctcgcgctgccgcactcgccgtactggtcgggcgtcacggtcggcggcgcgctgg 72904 Query: 356 caacgggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 | ||||| || ||||| ||||||||| |||| ||||| |||||||||| Sbjct: 72903 cgacgggcgcgcacgggagctcgctgtgggggaaggggagcgccgtgc 72856
>ref|XM_472075.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1989 Score = 73.8 bits (37), Expect = 4e-10 Identities = 85/101 (84%) Strand = Plus / Plus Query: 197 ctgcaccgtcaccaacgtgtacggctccttcccggaccgcaccatctgccgcgcggccaa 256 |||||| ||||| ||| | |||||||||||||| |||||| || ||||||||||||| Sbjct: 243 ctgcacggtcacgaacatctacggctccttccccgaccgcgccgcctgccgcgcggccgg 302 Query: 257 cgccacgttcccccgcaccgagaaggagctcgtggccgccg 297 || | ||| ||| ||||||||| ||||||||||||| |||| Sbjct: 303 cgtcgcgtacccgcgcaccgaggaggagctcgtggcggccg 343 Score = 63.9 bits (32), Expect = 4e-07 Identities = 89/108 (82%) Strand = Plus / Plus Query: 296 cggggctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcg 355 ||||||||||||||||||||||||| ||||||| || |||| |||| ||| || | Sbjct: 563 cggggctcgcgctgccgcactcgccgtactggtcgggcgtcacggtcggcggcgcgctgg 622 Query: 356 caacgggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 | ||||| || ||||| ||||||||| |||| ||||| |||||||||| Sbjct: 623 cgacgggcgcgcacgggagctcgctgtgggggaaggggagcgccgtgc 670
>ref|XM_462935.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1794 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 304 gcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacgggt 363 ||||||||| || |||||||||||| || |||||| | || ||| | |||| ||||| Sbjct: 460 gcgctgccgtacgcgccctactggtgggggctcaccgtgggcggcatgctcggcacgggc 519 Query: 364 gcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||||||||||||| |||| || ||||||||||||| Sbjct: 520 gcgcacggcagctcgctgtgggggaaaggcagcgccgtgc 559 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 184 gcggcacgtccgactgcaccgtcaccaacgtgtacggctccttcccggaccg 235 |||||||| ||||||||||||| | | || ||||||| |||||||||||| Sbjct: 122 gcggcacggccgactgcaccgtgtcgagcgcgtacggcgtcttcccggaccg 173
>gb|AC084767.11| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0057P11 map R606A, complete sequence Length = 163580 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 304 gcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacgggt 363 ||||||||| || |||||||||||| || |||||| | || ||| | |||| ||||| Sbjct: 83693 gcgctgccgtacgcgccctactggtgggggctcaccgtgggcggcatgctcggcacgggc 83634 Query: 364 gcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||||||||||||| |||| || ||||||||||||| Sbjct: 83633 gcgcacggcagctcgctgtgggggaaaggcagcgccgtgc 83594 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 184 gcggcacgtccgactgcaccgtcaccaacgtgtacggctccttcccggaccg 235 |||||||| ||||||||||||| | | || ||||||| |||||||||||| Sbjct: 84031 gcggcacggccgactgcaccgtgtcgagcgcgtacggcgtcttcccggaccg 83980
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 304 gcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacgggt 363 ||||||||| || |||||||||||| || |||||| | || ||| | |||| ||||| Sbjct: 20048320 gcgctgccgtacgcgccctactggtgggggctcaccgtgggcggcatgctcggcacgggc 20048379 Query: 364 gcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||||||||||||| |||| || ||||||||||||| Sbjct: 20048380 gcgcacggcagctcgctgtgggggaaaggcagcgccgtgc 20048419 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 184 gcggcacgtccgactgcaccgtcaccaacgtgtacggctccttcccggaccg 235 |||||||| ||||||||||||| | | || ||||||| |||||||||||| Sbjct: 20047982 gcggcacggccgactgcaccgtgtcgagcgcgtacggcgtcttcccggaccg 20048033
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 304 gcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacgggt 363 ||||||||| || |||||||||||| || |||||| | || ||| | |||| ||||| Sbjct: 20041348 gcgctgccgtacgcgccctactggtgggggctcaccgtgggcggcatgctcggcacgggc 20041407 Query: 364 gcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||||||||||||| |||| || ||||||||||||| Sbjct: 20041408 gcgcacggcagctcgctgtgggggaaaggcagcgccgtgc 20041447 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 184 gcggcacgtccgactgcaccgtcaccaacgtgtacggctccttcccggaccg 235 |||||||| ||||||||||||| | | || ||||||| |||||||||||| Sbjct: 20041010 gcggcacggccgactgcaccgtgtcgagcgcgtacggcgtcttcccggaccg 20041061
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 151 ccagcccgccgccggagccggtggagtgcgcccgcggcacgtccgactgcaccgtcacca 210 ||||||||||||||| |||||| |||||| |||||| || |||||||||| |||| Sbjct: 1265906 ccagcccgccgccggggccggtcaggtgcgcgtcgggcacggccaactgcaccgtgacca 1265847 Query: 211 acgtgtacggctccttcccggaccgcaccatctgccgcgc 250 ||| ||||||| | |||||||||||| ||| |||||||| Sbjct: 1265846 acgcgtacggcgcgttcccggaccgctccacgtgccgcgc 1265807 Score = 54.0 bits (27), Expect = 4e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 |||||||||||||||||||| |||||| || |||||| |||| || || || | ||| Sbjct: 1265532 ctcgcgctgccgcactcgccgtactggctggggctcaccgtcggcgggctgctgtcgacg 1265473 Query: 361 ggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || || ||||| |||||| || |||| |||||| ||||||||| Sbjct: 1265472 ggcgcgcacgggagctcggtgtgggggaagggcggcgccgtgc 1265430 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactgg 327 |||||||||||||||||||| |||||| Sbjct: 1275093 ctcgcgctgccgcactcgccgtactgg 1275067
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 151 ccagcccgccgccggagccggtggagtgcgcccgcggcacgtccgactgcaccgtcacca 210 ||||||||||||||| |||||| |||||| |||||| || |||||||||| |||| Sbjct: 96997 ccagcccgccgccggggccggtcaggtgcgcgtcgggcacggccaactgcaccgtgacca 96938 Query: 211 acgtgtacggctccttcccggaccgcaccatctgccgcgc 250 ||| ||||||| | |||||||||||| ||| |||||||| Sbjct: 96937 acgcgtacggcgcgttcccggaccgctccacgtgccgcgc 96898 Score = 54.0 bits (27), Expect = 4e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 |||||||||||||||||||| |||||| || |||||| |||| || || || | ||| Sbjct: 96623 ctcgcgctgccgcactcgccgtactggctggggctcaccgtcggcgggctgctgtcgacg 96564 Query: 361 ggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || || ||||| |||||| || |||| |||||| ||||||||| Sbjct: 96563 ggcgcgcacgggagctcggtgtgggggaagggcggcgccgtgc 96521 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactgg 327 |||||||||||||||||||| |||||| Sbjct: 106184 ctcgcgctgccgcactcgccgtactgg 106158
>dbj|AP006754.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0018H03, complete sequence Length = 94450 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 151 ccagcccgccgccggagccggtggagtgcgcccgcggcacgtccgactgcaccgtcacca 210 ||||||||||||||| |||||| |||||| |||||| || |||||||||| |||| Sbjct: 39935 ccagcccgccgccggggccggtcaggtgcgcgtcgggcacggccaactgcaccgtgacca 39876 Query: 211 acgtgtacggctccttcccggaccgcaccatctgccgcgc 250 ||| ||||||| | |||||||||||| ||| |||||||| Sbjct: 39875 acgcgtacggcgcgttcccggaccgctccacgtgccgcgc 39836 Score = 54.0 bits (27), Expect = 4e-04 Identities = 84/103 (81%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 |||||||||||||||||||| |||||| || |||||| |||| || || || | ||| Sbjct: 39561 ctcgcgctgccgcactcgccgtactggctggggctcaccgtcggcgggctgctgtcgacg 39502 Query: 361 ggtgcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || || ||||| |||||| || |||| |||||| ||||||||| Sbjct: 39501 ggcgcgcacgggagctcggtgtgggggaagggcggcgccgtgc 39459 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactgg 327 |||||||||||||||||||| |||||| Sbjct: 49122 ctcgcgctgccgcactcgccgtactgg 49096
>dbj|AK109527.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-B07, full insert sequence Length = 1924 Score = 63.9 bits (32), Expect = 4e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 304 gcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacgggt 363 ||||||||| || |||||||||||| || |||||| | || ||| | |||| ||||| Sbjct: 488 gcgctgccgtacgcgccctactggtgggggctcaccgtgggcggcatgctcggcacgggc 547 Query: 364 gcccacggcagctcgctgcggggcaagggcagcgccgtgc 403 || ||||||||||||||| |||| || ||||||||||||| Sbjct: 548 gcgcacggcagctcgctgtgggggaaaggcagcgccgtgc 587 Score = 40.1 bits (20), Expect = 5.4 Identities = 44/52 (84%) Strand = Plus / Plus Query: 184 gcggcacgtccgactgcaccgtcaccaacgtgtacggctccttcccggaccg 235 |||||||| ||||||||||||| | | || ||||||| |||||||||||| Sbjct: 150 gcggcacggccgactgcaccgtgtcgagcgcgtacggcgtcttcccggaccg 201
>ref|XM_483353.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1561 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 ||||| ||||||||| ||||||||||| || |||||| |||| ||||||||| | || Sbjct: 467 ctcgctctgccgcacgcgccctactggctcgacctcaccgtcggcggcctcctctccacc 526 Query: 361 ggtgcccacggcagctcg 378 || ||||||||||||||| Sbjct: 527 ggcgcccacggcagctcg 544
>ref|XM_483354.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1740 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 ||||| ||||||||| ||||||||||| || |||||| |||| ||||||||| | || Sbjct: 467 ctcgctctgccgcacgcgccctactggctcgacctcaccgtcggcggcctcctctccacc 526 Query: 361 ggtgcccacggcagctcg 378 || ||||||||||||||| Sbjct: 527 ggcgcccacggcagctcg 544
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 ||||| ||||||||| ||||||||||| || |||||| |||| ||||||||| | || Sbjct: 36052 ctcgctctgccgcacgcgccctactggctcgacctcaccgtcggcggcctcctctccacc 35993 Query: 361 ggtgcccacggcagctcg 378 || ||||||||||||||| Sbjct: 35992 ggcgcccacggcagctcg 35975
>dbj|AP004708.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0700D12 Length = 145177 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Minus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 ||||| ||||||||| ||||||||||| || |||||| |||| ||||||||| | || Sbjct: 141589 ctcgctctgccgcacgcgccctactggctcgacctcaccgtcggcggcctcctctccacc 141530 Query: 361 ggtgcccacggcagctcg 378 || ||||||||||||||| Sbjct: 141529 ggcgcccacggcagctcg 141512
>dbj|AK063323.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H04, full insert sequence Length = 1561 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 ||||| ||||||||| ||||||||||| || |||||| |||| ||||||||| | || Sbjct: 467 ctcgctctgccgcacgcgccctactggctcgacctcaccgtcggcggcctcctctccacc 526 Query: 361 ggtgcccacggcagctcg 378 || ||||||||||||||| Sbjct: 527 ggcgcccacggcagctcg 544
>dbj|AK063287.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-D10, full insert sequence Length = 1740 Score = 60.0 bits (30), Expect = 6e-06 Identities = 66/78 (84%) Strand = Plus / Plus Query: 301 ctcgcgctgccgcactcgccctactggtacggactcaccatcgggggcctcctcgcaacg 360 ||||| ||||||||| ||||||||||| || |||||| |||| ||||||||| | || Sbjct: 467 ctcgctctgccgcacgcgccctactggctcgacctcaccgtcggcggcctcctctccacc 526 Query: 361 ggtgcccacggcagctcg 378 || ||||||||||||||| Sbjct: 527 ggcgcccacggcagctcg 544
>ref|XM_463947.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1872 Score = 46.1 bits (23), Expect = 0.087 Identities = 26/27 (96%) Strand = Plus / Plus Query: 301 ctcgcgctgccgcactcgccctactgg 327 |||||||||||||||||||| |||||| Sbjct: 491 ctcgcgctgccgcactcgccgtactgg 517
>ref|NM_197045.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0012L23.42), mRNA Length = 2643 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 cccgccgccggagccggtgga 175 ||||||||||||||||||||| Sbjct: 2419 cccgccgccggagccggtgga 2399
>ref|XM_872047.1| PREDICTED: Bos taurus similar to apolipoprotein L, 3 (predicted), transcript variant 2 (LOC512905), mRNA Length = 1297 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 gactgcaccgtcaccaacgtg 215 ||||||||||||||||||||| Sbjct: 332 gactgcaccgtcaccaacgtg 352
>ref|XM_590511.2| PREDICTED: Bos taurus similar to apolipoprotein L, 3 (predicted), transcript variant 1 (LOC512905), mRNA Length = 1397 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 195 gactgcaccgtcaccaacgtg 215 ||||||||||||||||||||| Sbjct: 432 gactgcaccgtcaccaacgtg 452
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 gcaccatctgccgcgcggcca 255 ||||||||||||||||||||| Sbjct: 1543049 gcaccatctgccgcgcggcca 1543029
>gb|AC051632.18| Oryza sativa chromosome 10 BAC OSJNBa0012L23 genomic sequence, complete sequence Length = 153182 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cccgccgccggagccggtgga 175 ||||||||||||||||||||| Sbjct: 43413 cccgccgccggagccggtgga 43433
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 gcaccatctgccgcgcggcca 255 ||||||||||||||||||||| Sbjct: 1922010 gcaccatctgccgcgcggcca 1921990
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cccgccgccggagccggtgga 175 ||||||||||||||||||||| Sbjct: 17688293 cccgccgccggagccggtgga 17688313
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 235 gcaccatctgccgcgcggcca 255 ||||||||||||||||||||| Sbjct: 1944035 gcaccatctgccgcgcggcca 1944015
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 cccgccgccggagccggtgga 175 ||||||||||||||||||||| Sbjct: 17697546 cccgccgccggagccggtgga 17697566
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 ccagcccgccgccggagccg 170 |||||||||||||||||||| Sbjct: 2204589 ccagcccgccgccggagccg 2204608
>ref|XM_380547.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00371.1) partial mRNA Length = 2511 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 121 tcctggtgctcttcctcggc 140 |||||||||||||||||||| Sbjct: 449 tcctggtgctcttcctcggc 430
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 cccgccgccggagccggtgg 174 |||||||||||||||||||| Sbjct: 4671836 cccgccgccggagccggtgg 4671855
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 gcaccatctgccgcgcggcc 254 |||||||||||||||||||| Sbjct: 171745 gcaccatctgccgcgcggcc 171726
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 cctcctggtgctcttcctcg 138 |||||||||||||||||||| Sbjct: 1345591 cctcctggtgctcttcctcg 1345610
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 cgccgccggagccggtggag 176 |||||||||||||||||||| Sbjct: 4683678 cgccgccggagccggtggag 4683697 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,118,331 Number of Sequences: 3902068 Number of extensions: 2118331 Number of successful extensions: 42601 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41999 Number of HSP's gapped (non-prelim): 599 length of query: 403 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 381 effective length of database: 17,147,199,772 effective search space: 6533083113132 effective search space used: 6533083113132 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
