ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet29c12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_473089.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1365 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 265 gcgacttcgagaacgagcggctgtacagggcgtacctcgtgatccagaggttcaagaaga 324 ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| || || Sbjct: 230 gcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggagga 289 Query: 325 ccataacgtgcgaccc 340 | | ||||||||||| Sbjct: 290 cggtgacgtgcgaccc 305
>emb|AL731638.3|OSJN00283 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0116K07, complete sequence Length = 130779 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 265 gcgacttcgagaacgagcggctgtacagggcgtacctcgtgatccagaggttcaagaaga 324 ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| || || Sbjct: 75159 gcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggagga 75218 Query: 325 ccataacgtgcgaccc 340 | | ||||||||||| Sbjct: 75219 cggtgacgtgcgaccc 75234
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 265 gcgacttcgagaacgagcggctgtacagggcgtacctcgtgatccagaggttcaagaaga 324 ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| || || Sbjct: 25193492 gcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggagga 25193551 Query: 325 ccataacgtgcgaccc 340 | | ||||||||||| Sbjct: 25193552 cggtgacgtgcgaccc 25193567
>dbj|AK104903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-F07, full insert sequence Length = 1666 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 265 gcgacttcgagaacgagcggctgtacagggcgtacctcgtgatccagaggttcaagaaga 324 ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| || || Sbjct: 258 gcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggagga 317 Query: 325 ccataacgtgcgaccc 340 | | ||||||||||| Sbjct: 318 cggtgacgtgcgaccc 333
>dbj|AK066703.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075O17, full insert sequence Length = 1794 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 265 gcgacttcgagaacgagcggctgtacagggcgtacctcgtgatccagaggttcaagaaga 324 ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| || || Sbjct: 391 gcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggagga 450 Query: 325 ccataacgtgcgaccc 340 | | ||||||||||| Sbjct: 451 cggtgacgtgcgaccc 466
>dbj|AK061301.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-F03, full insert sequence Length = 1351 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 265 gcgacttcgagaacgagcggctgtacagggcgtacctcgtgatccagaggttcaagaaga 324 ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| || || Sbjct: 387 gcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggagga 446 Query: 325 ccataacgtgcgaccc 340 | | ||||||||||| Sbjct: 447 cggtgacgtgcgaccc 462
>emb|AL606604.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0014K14, complete sequence Length = 150187 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Plus Query: 265 gcgacttcgagaacgagcggctgtacagggcgtacctcgtgatccagaggttcaagaaga 324 ||||||||||||||||||||||||||| ||||||| |||||||||| ||||| || || Sbjct: 140919 gcgacttcgagaacgagcggctgtacaaggcgtacaaggtgatccagaagttcaggagga 140978 Query: 325 ccataacgtgcgaccc 340 | | ||||||||||| Sbjct: 140979 cggtgacgtgcgaccc 140994
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 50.1 bits (25), Expect = 0.006 Identities = 31/33 (93%) Strand = Plus / Plus Query: 185 cggcggtggtggcgggggcggttacggaggcgg 217 ||||||||||||||| ||||||||||| ||||| Sbjct: 17440 cggcggtggtggcggtggcggttacggcggcgg 17472
>gb|BT018002.1| Zea mays clone EL01N0526H03.c mRNA sequence Length = 765 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 192 ggtggcgggggcggttacggaggcggtggc 221 |||||||| ||||| ||||||||||||||| Sbjct: 456 ggtggcggcggcggctacggaggcggtggc 485
>gb|AC012164.12| Drosophila melanogaster clone BACR14D22, complete sequence Length = 169385 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 163 ggataggcatcgggattgggat 184 |||||||||||||||||||||| Sbjct: 115557 ggataggcatcgggattgggat 115578
>ref|XM_971146.1| PREDICTED: Tribolium castaneum hypothetical protein LOC657305 (LOC657305), mRNA Length = 351 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 184 tcggcggtggtggcgggggcggttacggaggcgg 217 ||||||| |||||||| ||||||||||| ||||| Sbjct: 119 tcggcggcggtggcggaggcggttacggtggcgg 152
>gb|AC132231.6| Mus musculus BAC clone RP24-484D4 from chromosome 1, complete sequence Length = 188905 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 2 cttctgccgacacctccagtgagaaa 27 |||||||| ||||||||||||||||| Sbjct: 129996 cttctgcccacacctccagtgagaaa 130021
>gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 of 74 of the complete sequence Length = 315109 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 163 ggataggcatcgggattgggat 184 |||||||||||||||||||||| Sbjct: 271663 ggataggcatcgggattgggat 271642
>gb|AF005359.1|AF005359 Nicotiana glutinosa RNA-binding protein mRNA, complete cds Length = 690 Score = 44.1 bits (22), Expect = 0.36 Identities = 28/30 (93%) Strand = Plus / Plus Query: 188 cggtggtggcgggggcggttacggaggcgg 217 ||||||||| || ||||||||||||||||| Sbjct: 390 cggtggtggtggcggcggttacggaggcgg 419
>gb|M30780.1|ACAMYOIHC A.castellanii myosin I heavy chain (MIL) gene, complete cds Length = 5705 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 192 ggtggcgggggcggttacggaggcgg 217 |||||||| ||||||||||||||||| Sbjct: 4681 ggtggcggcggcggttacggaggcgg 4706
>ref|XM_481099.1| Oryza sativa (japonica cultivar-group), mRNA Length = 846 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 aggcaacggcggcggcggggg 163 ||||||||||||||||||||| Sbjct: 322 aggcaacggcggcggcggggg 342
>ref|XM_588833.2| PREDICTED: Bos taurus similar to CG2186-PA (LOC511489), mRNA Length = 3255 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcggt 206 ||||||||||||||||||||| Sbjct: 1271 ggcggtggtggcgggggcggt 1251
>ref|XM_814474.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053507167.169) partial mRNA Length = 10299 Score = 42.1 bits (21), Expect = 1.4 Identities = 33/37 (89%) Strand = Plus / Minus Query: 185 cggcggtggtggcgggggcggttacggaggcggtggc 221 ||||||||||||||| |||||| ||| ||||||||| Sbjct: 4908 cggcggtggtggcggtggcggtggcggcggcggtggc 4872
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 90 gcgctcgcggcgcgcgcctccgacgccagccgt 122 ||||||||||||| |||| |||||||| ||||| Sbjct: 3487211 gcgctcgcggcgctcgccgccgacgcctgccgt 3487243
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 aggcaacggcggcggcggggg 163 ||||||||||||||||||||| Sbjct: 9874007 aggcaacggcggcggcggggg 9874027
>dbj|AP005697.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0005C03 Length = 166423 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 aggcaacggcggcggcggggg 163 ||||||||||||||||||||| Sbjct: 21254 aggcaacggcggcggcggggg 21274
>dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1063H10 Length = 170453 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 aggcaacggcggcggcggggg 163 ||||||||||||||||||||| Sbjct: 137939 aggcaacggcggcggcggggg 137959
>emb|AL512548.1|B0311F12 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0311F12, complete sequence Length = 55361 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 aggcaacggcggcggcggggg 163 ||||||||||||||||||||| Sbjct: 31606 aggcaacggcggcggcggggg 31626
>dbj|AK115588.1| Ciona intestinalis cDNA, clone:cilv005i18, full insert sequence Length = 710 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 189 ggtggtggcgggggcggttacggaggcggtggc 221 ||||| ||||| |||||||||||||| |||||| Sbjct: 358 ggtggcggcggcggcggttacggaggtggtggc 390 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 189 ggtggtggcgggggcggttacggaggcggtggc 221 ||||||||||| || ||||||||||| |||||| Sbjct: 313 ggtggtggcggtggtggttacggaggtggtggc 345
>dbj|AB066265.2| Triticum aestivum WCSP1 mRNA for cold shock protein-1, complete cds Length = 1029 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 192 ggtggcgggggcggttacggaggcggtgg 220 |||||||| ||||| |||||||||||||| Sbjct: 371 ggtggcggtggcggctacggaggcggtgg 399
>gb|DQ252483.1| Solanum tuberosum clone 031C06 SGRP-1-like mRNA, complete sequence Length = 701 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 189 ggtggtggcgggggcggttacggaggcggtggc 221 |||||||| || |||||||||||||| |||||| Sbjct: 316 ggtggtggtggcggcggttacggaggaggtggc 348
>ref|XM_512748.1| PREDICTED: Pan troglodytes LOC456127 (LOC456127), mRNA Length = 1683 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 1529 ggcggtggtggcgggggcgg 1510
>gb|AC168980.1| Mus musculus BAC clone RP24-484L12 from chromosome 17, complete sequence Length = 192097 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 cttgctctcttctgcttttt 76 |||||||||||||||||||| Sbjct: 17568 cttgctctcttctgcttttt 17587
>ref|XM_463570.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1014 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 ataggcaacggcggcggcgg 160 |||||||||||||||||||| Sbjct: 355 ataggcaacggcggcggcgg 336
>ref|NM_192266.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1203 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 221 ctcgccgtcgcatacgccgccgtc 244 ||||||||||| |||||||||||| Sbjct: 498 ctcgccgtcgcctacgccgccgtc 521
>ref|NM_006732.1| Homo sapiens FBJ murine osteosarcoma viral oncogene homolog B (FOSB), mRNA Length = 3775 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 1381 ggcggtggtggcgggggcgg 1362
>ref|NM_005739.2| Homo sapiens RAS guanyl releasing protein 1 (calcium and DAG-regulated) (RASGRP1), mRNA Length = 5021 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cggcggtggtggcgggggcg 204 |||||||||||||||||||| Sbjct: 28 cggcggtggtggcgggggcg 47
>ref|XM_470697.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 179 tgggatcggcggtggtggcgggggcggt 206 |||||||||||||||||| || |||||| Sbjct: 1030 tgggatcggcggtggtggtggtggcggt 1003
>gb|AC134344.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0059K16, complete sequence Length = 139615 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggcaacggcggcggcggggg 163 |||||||||||||||||||| Sbjct: 53506 ggcaacggcggcggcggggg 53487
>ref|XM_366924.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03000.4) partial mRNA Length = 1776 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 192 ggtggcgggggcggttacggaggcggtg 219 |||||||||||||| ||||| ||||||| Sbjct: 1214 ggtggcgggggcgggtacggtggcggtg 1187
>ref|XM_425223.1| PREDICTED: Gallus gallus similar to chromosome 16 open reading frame 23 (LOC427650), mRNA Length = 1527 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 atcggcggtggtggcggggg 202 |||||||||||||||||||| Sbjct: 873 atcggcggtggtggcggggg 854
>ref|XM_880671.1| PREDICTED: Bos taurus similar to Protein fosB, transcript variant 7 (LOC540819), mRNA Length = 1118 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 842 ggcggtggtggcgggggcgg 823
>ref|XM_880621.1| PREDICTED: Bos taurus similar to Protein fosB, transcript variant 5 (LOC540819), mRNA Length = 1190 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 936 ggcggtggtggcgggggcgg 917
>ref|XM_880598.1| PREDICTED: Bos taurus similar to Protein fosB, transcript variant 4 (LOC540819), mRNA Length = 1160 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 906 ggcggtggtggcgggggcgg 887
>ref|XM_880576.1| PREDICTED: Bos taurus similar to Protein fosB, transcript variant 3 (LOC540819), mRNA Length = 1135 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 881 ggcggtggtggcgggggcgg 862
>ref|XM_613299.2| PREDICTED: Bos taurus similar to Protein fosB, transcript variant 1 (LOC540819), mRNA Length = 1604 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 1328 ggcggtggtggcgggggcgg 1309
>ref|XM_880536.1| PREDICTED: Bos taurus similar to Protein fosB, transcript variant 2 (LOC540819), mRNA Length = 1272 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 996 ggcggtggtggcgggggcgg 977
>gb|BC067298.1| Homo sapiens RAS guanyl releasing protein 1 (calcium and DAG-regulated), mRNA (cDNA clone IMAGE:30377671), partial cds Length = 2379 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cggcggtggtggcgggggcg 204 |||||||||||||||||||| Sbjct: 8 cggcggtggtggcgggggcg 27
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 179 tgggatcggcggtggtggcgggggcggt 206 |||||||||||||||||| || |||||| Sbjct: 14604831 tgggatcggcggtggtggtggtggcggt 14604804
>gb|BC063042.1| Homo sapiens FBJ murine osteosarcoma viral oncogene homolog B, mRNA (cDNA clone IMAGE:5745635), partial cds Length = 3695 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 1235 ggcggtggtggcgggggcgg 1216
>ref|XM_755919.1| Ustilago maydis 521 hypothetical protein (UM04865.1) partial mRNA Length = 741 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 184 tcggcggtggtggcgggggcggttacggaggcggtg 219 |||||||||||||||| |||||| ||| ||||||| Sbjct: 650 tcggcggtggtggcggtggcggtggcggcggcggtg 685
>ref|XM_823433.1| Trypanosoma brucei TREU927 hypothetical protein (Tb11.02.2080) partial mRNA Length = 2766 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 tgtacagggcgtacctcgtg 305 |||||||||||||||||||| Sbjct: 2360 tgtacagggcgtacctcgtg 2379
>gb|AC126433.3| Mus musculus BAC clone RP24-468I23 from chromosome 17, complete sequence Length = 165036 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 cttgctctcttctgcttttt 76 |||||||||||||||||||| Sbjct: 125485 cttgctctcttctgcttttt 125504
>gb|AC129919.9| Homo sapiens chromosome 17, clone RP13-1277B16, complete sequence Length = 182735 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 7838 ggcggtggtggcgggggcgg 7819
>ref|XM_800155.1| Trypanosoma cruzi strain CL Brener dispersed gene family protein 1 (DGF-1) (Tc00.1047053416809.10) partial mRNA Length = 6586 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 atcggcggtggtggcgggggcggt 206 ||||||||||||||||| |||||| Sbjct: 1113 atcggcggtggtggcggcggcggt 1090
>gb|AC079113.4| Homo sapiens BAC clone RP11-81E15 from 7, complete sequence Length = 94669 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctctcttctgctttttggct 80 |||||||||||||||||||| Sbjct: 66801 ctctcttctgctttttggct 66782
>gb|DQ149101.1| Danio rerio integrin beta1 subunit-like protein 1 (itgb1) mRNA, complete cds Length = 2397 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ggcaccgacatctgcagcaa 385 |||||||||||||||||||| Sbjct: 1561 ggcaccgacatctgcagcaa 1580
>gb|AC164314.5| Mus musculus BAC clone RP23-17J18 from chromosome 17, complete sequence Length = 212588 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 cttgctctcttctgcttttt 76 |||||||||||||||||||| Sbjct: 104460 cttgctctcttctgcttttt 104479
>gb|BC040197.1| Homo sapiens FBJ murine osteosarcoma viral oncogene homolog B, mRNA (cDNA clone MGC:42291 IMAGE:4816584), complete cds Length = 3791 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 1382 ggcggtggtggcgggggcgg 1363
>emb|Z93015.9|HS169I5 Human DNA sequence from clone RP1-169I5 on chromosome Xp11 Contains the 3' end of the DDX3 gene for DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, the NYX gene for nyctalopin, a gem (nuclear organelle) associated protein 7 (GEMIN7) pseudogene and two CpG islands, complete sequence Length = 133568 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ctctcttctgctttttggct 80 |||||||||||||||||||| Sbjct: 19220 ctctcttctgctttttggct 19239
>ref|XM_786881.1| PREDICTED: Strongylocentrotus purpuratus similar to CG14296-PA, isoform A (LOC587130), partial mRNA Length = 496 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 gtgatccagaggttcaagaa 322 |||||||||||||||||||| Sbjct: 342 gtgatccagaggttcaagaa 323
>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete sequence Length = 147130 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 179 tgggatcggcggtggtggcgggggcggt 206 |||||||||||||||||| || |||||| Sbjct: 52880 tgggatcggcggtggtggtggtggcggt 52907
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 catccgggccgaaggcgagc 266 |||||||||||||||||||| Sbjct: 2691034 catccgggccgaaggcgagc 2691015
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 tcggcatcagcataggcaac 149 |||||||||||||||||||| Sbjct: 3079599 tcggcatcagcataggcaac 3079618
>emb|AL939127.1|SCO939127 Streptomyces coelicolor A3(2) complete genome; segment 24/29 Length = 290850 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggtggtggcgggggcg 204 |||||||||||||||||||| Sbjct: 90325 cggcggtggtggcgggggcg 90306
>gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, complete sequence Length = 160846 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cggcggtggtggcgggggcg 204 |||||||||||||||||||| Sbjct: 45365 cggcggtggtggcgggggcg 45346
>emb|CR542101.1| Homo sapiens full open reading frame cDNA clone RZPDo834G0237D for gene FOSB, FBJ murine osteosarcoma viral oncogene homolog B; complete cds, without stopcodon Length = 1014 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 788 ggcggtggtggcgggggcgg 769
>emb|BX322549.5| Zebrafish DNA sequence from clone DKEYP-9D12 in linkage group 24, complete sequence Length = 62252 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ggcaccgacatctgcagcaa 385 |||||||||||||||||||| Sbjct: 45645 ggcaccgacatctgcagcaa 45664
>ref|XM_397259.2| PREDICTED: Apis mellifera similar to ENSANGP00000024916 (LOC413820), mRNA Length = 2924 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 185 cggcggtggtggcgggggcggttacggaggcggtgg 220 |||||| || ||||| |||||| ||||||||||||| Sbjct: 2036 cggcggaggcggcggaggcggtcacggaggcggtgg 2071
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 175 ggattgggatcggcggtggtggcggggg 202 |||| |||||||||||||| |||||||| Sbjct: 7883727 ggatggggatcggcggtgggggcggggg 7883754
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gcaacggcggcggcgggggg 164 |||||||||||||||||||| Sbjct: 21406357 gcaacggcggcggcgggggg 21406376
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggcaacggcggcggcggggg 163 |||||||||||||||||||| Sbjct: 14637212 ggcaacggcggcggcggggg 14637193
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 179 tgggatcggcggtggtggcgggggcggt 206 |||||||||||||||||| || |||||| Sbjct: 14599806 tgggatcggcggtggtggtggtggcggt 14599779
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ataggcaacggcggcggcgg 160 |||||||||||||||||||| Sbjct: 38534651 ataggcaacggcggcggcgg 38534670 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ctcgccgtcgcatacgccgccgtc 244 ||||||||||| |||||||||||| Sbjct: 25743662 ctcgccgtcgcctacgccgccgtc 25743639
>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence Length = 193444 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ataggcaacggcggcggcgg 160 |||||||||||||||||||| Sbjct: 127738 ataggcaacggcggcggcgg 127757
>gb|AC138534.2| Homo sapiens chromosome 19 clone LLNLF-89H12, complete sequence Length = 40465 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 5908 ggcggtggtggcgggggcgg 5889
>gb|AC127496.5| Homo sapiens chromosome 17, clone CTD-2561B21, complete sequence Length = 166274 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 39101 ggcggtggtggcgggggcgg 39120
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 186 ggcggtggtggcgggggcggttacggaggcggtggc 221 |||||||||||||| || || ||||| ||||||||| Sbjct: 49490 ggcggtggtggcggcggaggctacggtggcggtggc 49525
>gb|AC138128.1| Homo sapiens chromosome 19 clone LLNLF-53H4, complete sequence Length = 38295 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 4391 ggcggtggtggcgggggcgg 4410
>dbj|AP003346.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0434C04 Length = 150064 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ataggcaacggcggcggcgg 160 |||||||||||||||||||| Sbjct: 55332 ataggcaacggcggcggcgg 55351
>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0408G07 Length = 126631 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 ataggcaacggcggcggcgg 160 |||||||||||||||||||| Sbjct: 120066 ataggcaacggcggcggcgg 120085
>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0039G05 Length = 138429 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 221 ctcgccgtcgcatacgccgccgtc 244 ||||||||||| |||||||||||| Sbjct: 46126 ctcgccgtcgcctacgccgccgtc 46103
>dbj|AP005912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0064I23 Length = 161865 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 175 ggattgggatcggcggtggtggcggggg 202 |||| |||||||||||||| |||||||| Sbjct: 130930 ggatggggatcggcggtgggggcggggg 130957
>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1729_E01 Length = 155527 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 gcaacggcggcggcgggggg 164 |||||||||||||||||||| Sbjct: 50413 gcaacggcggcggcgggggg 50432
>dbj|AK120709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F15, full insert sequence Length = 1976 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 179 tgggatcggcggtggtggcgggggcggt 206 |||||||||||||||||| || |||||| Sbjct: 1286 tgggatcggcggtggtggtggtggcggt 1259
>dbj|AK110542.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-B04, full insert sequence Length = 1467 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 179 tgggatcggcggtggtggcgggggcggt 206 |||||||||||||||||| || |||||| Sbjct: 885 tgggatcggcggtggtggtggtggcggt 858
>gb|AY893870.1| Synthetic construct Homo sapiens clone FLH131163.01L FBJ murine osteosarcoma viral oncogene-like B (FOSB) mRNA, partial cds Length = 1017 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 788 ggcggtggtggcgggggcgg 769
>dbj|AK105787.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H01, full insert sequence Length = 1133 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggcaacggcggcggcggggg 163 |||||||||||||||||||| Sbjct: 150 ggcaacggcggcggcggggg 131
>gb|BC036724.1| Homo sapiens FBJ murine osteosarcoma viral oncogene homolog B, mRNA (cDNA clone MGC:39968 IMAGE:5212854), complete cds Length = 3820 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 1359 ggcggtggtggcgggggcgg 1340
>dbj|AK065362.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013006O19, full insert sequence Length = 1287 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 ggcaacggcggcggcggggg 163 |||||||||||||||||||| Sbjct: 155 ggcaacggcggcggcggggg 136
>emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on chromosome 12, complete sequence Length = 205340 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 ttcgagaacgagcggctgta 289 |||||||||||||||||||| Sbjct: 67653 ttcgagaacgagcggctgta 67634
>gb|AF081195.1|AF081195 Homo sapiens calcium and DAG-regulated guanine nucleotide exchange factor II mRNA, complete cds Length = 5075 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cggcggtggtggcgggggcg 204 |||||||||||||||||||| Sbjct: 28 cggcggtggtggcgggggcg 47
>gb|AY898963.1| Homo sapiens FBJ murine osteosarcoma viral oncogene homolog B (FOSB) gene, complete cds Length = 10888 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 6495 ggcggtggtggcgggggcgg 6476
>gb|L49169.1|HUMG0S3R Human G0S3 mRNA, complete cds Length = 3775 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 1381 ggcggtggtggcgggggcgg 1362
>ref|NM_001034971.1| Danio rerio integrin beta1 subunit-like protein 1 (itgb1), mRNA Length = 2397 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 ggcaccgacatctgcagcaa 385 |||||||||||||||||||| Sbjct: 1561 ggcaccgacatctgcagcaa 1580
>gb|M89651.1|HUMMMDBC Human DNA from cosmid DNA MMDB (f10080) and MMDC (f13544) from chromosome 19q13.3 (obtained by automated sequence analysis) Length = 68468 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ggcggtggtggcgggggcgg 205 |||||||||||||||||||| Sbjct: 33904 ggcggtggtggcgggggcgg 33885
>emb|AL732463.7| Mouse DNA sequence from clone RP23-216N18 on chromosome X, complete sequence Length = 158239 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 aatggcaggctgctcggtgc 48 |||||||||||||||||||| Sbjct: 13352 aatggcaggctgctcggtgc 13333
>dbj|AB035350.1| Oryza sativa (japonica cultivar-group) DNA, homologous to 5'-flanking region of mitochondrial rps10 genes, clone:#16 Length = 1392 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 175 ggattgggatcggcggtggtggcggggg 202 |||| |||||||||||||| |||||||| Sbjct: 619 ggatggggatcggcggtgggggcggggg 592 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,688,420 Number of Sequences: 3902068 Number of extensions: 3688420 Number of successful extensions: 87280 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86054 Number of HSP's gapped (non-prelim): 1226 length of query: 419 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 397 effective length of database: 17,147,199,772 effective search space: 6807438309484 effective search space used: 6807438309484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
