| Clone Name | baet27h07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full insert sequence Length = 1094 Score = 498 bits (251), Expect = e-138 Identities = 251/251 (100%) Strand = Plus / Plus Query: 11 atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 70 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 60 Query: 71 gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 120 Query: 131 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 180 Query: 191 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcg 250 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcg 240 Query: 251 ctcgtcccgcg 261 ||||||||||| Sbjct: 241 ctcgtcccgcg 251
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 46.1 bits (23), Expect = 0.055 Identities = 26/27 (96%) Strand = Plus / Minus Query: 122 ctgctgatggtgccgctcctgctcgcc 148 ||||||||||||||||| ||||||||| Sbjct: 64654 ctgctgatggtgccgctgctgctcgcc 64628
>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151), mRNA Length = 2463 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 119 gtgctgctgatggtgccgctcctgct 144 |||||||||||||||| ||||||||| Sbjct: 1866 gtgctgctgatggtgctgctcctgct 1841
>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151), mRNA Length = 2212 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 119 gtgctgctgatggtgccgctcctgct 144 |||||||||||||||| ||||||||| Sbjct: 1615 gtgctgctgatggtgctgctcctgct 1590
>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151), mRNA Length = 2766 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 119 gtgctgctgatggtgccgctcctgct 144 |||||||||||||||| ||||||||| Sbjct: 2169 gtgctgctgatggtgctgctcctgct 2144
>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR07P02, complete sequence Length = 160920 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 119 gtgctgctgatggtgccgctcctgct 144 |||||||||||||||| ||||||||| Sbjct: 152966 gtgctgctgatggtgctgctcctgct 152991
>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA Length = 2337 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 119 gtgctgctgatggtgccgctcctgct 144 |||||||||||||||| ||||||||| Sbjct: 1626 gtgctgctgatggtgctgctcctgct 1601
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone BACR03K23, complete sequence Length = 160346 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 119 gtgctgctgatggtgccgctcctgct 144 |||||||||||||||| ||||||||| Sbjct: 30635 gtgctgctgatggtgctgctcctgct 30660
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Plus Query: 119 gtgctgctgatggtgccgctcctgct 144 |||||||||||||||| ||||||||| Sbjct: 122978 gtgctgctgatggtgctgctcctgct 123003
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.22 Identities = 25/26 (96%) Strand = Plus / Minus Query: 56 aacgaagcgcggcacgcaatggcgcc 81 ||||||||||| |||||||||||||| Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 42.1 bits (21), Expect = 0.86 Identities = 24/25 (96%) Strand = Plus / Plus Query: 220 gcaggccagcatcgaccaggtcctc 244 ||||||||||||||||||| ||||| Sbjct: 601378 gcaggccagcatcgaccagatcctc 601402
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cgtcgtctccactgccggcgt 107 ||||||||||||||||||||| Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 42.1 bits (21), Expect = 0.86 Identities = 21/21 (100%) Strand = Plus / Minus Query: 87 cgtcgtctccactgccggcgt 107 ||||||||||||||||||||| Sbjct: 101881 cgtcgtctccactgccggcgt 101861
>ref|XM_483633.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gccgctcctgctcgccatggcgcg 156 |||||| ||||||||||||||||| Sbjct: 95 gccgctgctgctcgccatggcgcg 72
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 ccgctgctcgtgctgctgat 129 |||||||||||||||||||| Sbjct: 167055 ccgctgctcgtgctgctgat 167036
>ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute carrier family 13, member 3 (Sodium-dependent high-affinity dicarboxylate transporter 2) (Na(+)/dicarboxylate cotransporter 3) (NaDC-3) (hNaDC3) (LOC485910), mRNA Length = 1806 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 112 gctgctcgtgctgctgatggtgccgctc 139 |||||||||||||||| ||| ||||||| Sbjct: 48 gctgctcgtgctgctgttggcgccgctc 75
>gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 12446 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgcatgcaaacaaatcacta 31 |||||||||||||||||||| Sbjct: 1760 tgcatgcaaacaaatcacta 1779
>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169964 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 tgcatgcaaacaaatcacta 31 |||||||||||||||||||| Sbjct: 169725 tgcatgcaaacaaatcacta 169744
>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene, complete sequence; and unknown genes Length = 7718 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gtgctgctgatggtgccgct 138 |||||||||||||||||||| Sbjct: 5917 gtgctgctgatggtgccgct 5936
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 cgtctccactgccggcgtctccgctgct 117 |||| |||| |||||||||||||||||| Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 cgtctccactgccggcgtctccgctgct 117 |||| |||| |||||||||||||||||| Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gccgctcctgctcgccatggcgcg 156 |||||| ||||||||||||||||| Sbjct: 27371603 gccgctgctgctcgccatggcgcg 27371626
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 cgtctccactgccggcgtctccgctgct 117 |||| |||| |||||||||||||||||| Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 cgtctccactgccggcgtctccgctgct 117 |||| |||| |||||||||||||||||| Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 cgtctccactgccggcgtctccgctgct 117 |||| |||| |||||||||||||||||| Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359 Score = 40.1 bits (20), Expect = 3.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 90 cgtctccactgccggcgtctccgctgct 117 |||| |||| |||||||||||||||||| Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 133 gccgctcctgctcgccatggcgcg 156 |||||| ||||||||||||||||| Sbjct: 73130 gccgctgctgctcgccatggcgcg 73153
>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence Length = 118313 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gtgctgctgatggtgccgct 138 |||||||||||||||||||| Sbjct: 94972 gtgctgctgatggtgccgct 94991
>dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H06, full insert sequence Length = 1327 Score = 40.1 bits (20), Expect = 3.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 gccgctcctgctcgccatggcgcg 156 |||||| ||||||||||||||||| Sbjct: 95 gccgctgctgctcgccatggcgcg 72
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 ctgccggcgtctccgctgct 117 |||||||||||||||||||| Sbjct: 21719 ctgccggcgtctccgctgct 21738 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,547,482 Number of Sequences: 3902068 Number of extensions: 1547482 Number of successful extensions: 35153 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 34887 Number of HSP's gapped (non-prelim): 266 length of query: 261 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 239 effective length of database: 17,147,199,772 effective search space: 4098180745508 effective search space used: 4098180745508 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)