ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet27h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 498 e-138
2emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 46 0.055
3ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript ... 44 0.22
4ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript ... 44 0.22
5ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript ... 44 0.22
6gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50... 44 0.22
7gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA 44 0.22
8gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, r... 44 0.22
9gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 44 0.22
10gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.22
11gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 42 0.86
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
13dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.86
14ref|XM_483633.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.4
15gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 3.4
16ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute c... 40 3.4
17gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cance... 40 3.4
18gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Can... 40 3.4
19gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein gluco... 40 3.4
20dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
22dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
23dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
24dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.4
25gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, comp... 40 3.4
26dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.4
27gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 40 3.4

>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
           insert sequence
          Length = 1094

 Score =  498 bits (251), Expect = e-138
 Identities = 251/251 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcac 60

                                                                       
Query: 71  gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcaatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatg 120

                                                                       
Query: 131 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctac 180

                                                                       
Query: 191 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tgcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcg 240

                      
Query: 251 ctcgtcccgcg 261
           |||||||||||
Sbjct: 241 ctcgtcccgcg 251



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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
             complete sequence
          Length = 169168

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 122   ctgctgatggtgccgctcctgctcgcc 148
             ||||||||||||||||| |||||||||
Sbjct: 64654 ctgctgatggtgccgctgctgctcgcc 64628



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>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151),
            mRNA
          Length = 2463

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 119  gtgctgctgatggtgccgctcctgct 144
            |||||||||||||||| |||||||||
Sbjct: 1866 gtgctgctgatggtgctgctcctgct 1841



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>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151),
            mRNA
          Length = 2212

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 119  gtgctgctgatggtgccgctcctgct 144
            |||||||||||||||| |||||||||
Sbjct: 1615 gtgctgctgatggtgctgctcctgct 1590



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>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151),
            mRNA
          Length = 2766

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 119  gtgctgctgatggtgccgctcctgct 144
            |||||||||||||||| |||||||||
Sbjct: 2169 gtgctgctgatggtgctgctcctgct 2144



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>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
              BACR07P02, complete sequence
          Length = 160920

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 119    gtgctgctgatggtgccgctcctgct 144
              |||||||||||||||| |||||||||
Sbjct: 152966 gtgctgctgatggtgctgctcctgct 152991



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>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA
          Length = 2337

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 119  gtgctgctgatggtgccgctcctgct 144
            |||||||||||||||| |||||||||
Sbjct: 1626 gtgctgctgatggtgctgctcctgct 1601



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>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
             BACR03K23, complete sequence
          Length = 160346

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 119   gtgctgctgatggtgccgctcctgct 144
             |||||||||||||||| |||||||||
Sbjct: 30635 gtgctgctgatggtgctgctcctgct 30660



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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 119    gtgctgctgatggtgccgctcctgct 144
              |||||||||||||||| |||||||||
Sbjct: 122978 gtgctgctgatggtgctgctcctgct 123003



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 56      aacgaagcgcggcacgcaatggcgcc 81
               ||||||||||| ||||||||||||||
Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717



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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 220    gcaggccagcatcgaccaggtcctc 244
              ||||||||||||||||||| |||||
Sbjct: 601378 gcaggccagcatcgaccagatcctc 601402



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 87       cgtcgtctccactgccggcgt 107
                |||||||||||||||||||||
Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355



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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 87     cgtcgtctccactgccggcgt 107
              |||||||||||||||||||||
Sbjct: 101881 cgtcgtctccactgccggcgt 101861



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>ref|XM_483633.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1327

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 133 gccgctcctgctcgccatggcgcg 156
           |||||| |||||||||||||||||
Sbjct: 95  gccgctgctgctcgccatggcgcg 72



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    ccgctgctcgtgctgctgat 129
              ||||||||||||||||||||
Sbjct: 167055 ccgctgctcgtgctgctgat 167036



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>ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute carrier family 13,
           member 3 (Sodium-dependent high-affinity dicarboxylate
           transporter 2) (Na(+)/dicarboxylate cotransporter 3)
           (NaDC-3) (hNaDC3) (LOC485910), mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 112 gctgctcgtgctgctgatggtgccgctc 139
           |||||||||||||||| ||| |||||||
Sbjct: 48  gctgctcgtgctgctgttggcgccgctc 75



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>gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 12446

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 12   tgcatgcaaacaaatcacta 31
            ||||||||||||||||||||
Sbjct: 1760 tgcatgcaaacaaatcacta 1779



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>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169964

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     tgcatgcaaacaaatcacta 31
              ||||||||||||||||||||
Sbjct: 169725 tgcatgcaaacaaatcacta 169744



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>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene,
            complete sequence; and unknown genes
          Length = 7718

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 119  gtgctgctgatggtgccgct 138
            ||||||||||||||||||||
Sbjct: 5917 gtgctgctgatggtgccgct 5936



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 90      cgtctccactgccggcgtctccgctgct 117
               |||| |||| ||||||||||||||||||
Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 90      cgtctccactgccggcgtctccgctgct 117
               |||| |||| ||||||||||||||||||
Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 133      gccgctcctgctcgccatggcgcg 156
                |||||| |||||||||||||||||
Sbjct: 27371603 gccgctgctgctcgccatggcgcg 27371626



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>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0681H07
          Length = 144722

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 90    cgtctccactgccggcgtctccgctgct 117
             |||| |||| ||||||||||||||||||
Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 90   cgtctccactgccggcgtctccgctgct 117
            |||| |||| ||||||||||||||||||
Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863



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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0638A12
          Length = 140731

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 90     cgtctccactgccggcgtctccgctgct 117
              |||| |||| ||||||||||||||||||
Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 90    cgtctccactgccggcgtctccgctgct 117
             |||| |||| ||||||||||||||||||
Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368



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>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1323_A06
          Length = 95665

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   gccgctcctgctcgccatggcgcg 156
             |||||| |||||||||||||||||
Sbjct: 73130 gccgctgctgctcgccatggcgcg 73153



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>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence
          Length = 118313

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   gtgctgctgatggtgccgct 138
             ||||||||||||||||||||
Sbjct: 94972 gtgctgctgatggtgccgct 94991



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>dbj|AK061056.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-H06, full
           insert sequence
          Length = 1327

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 133 gccgctcctgctcgccatggcgcg 156
           |||||| |||||||||||||||||
Sbjct: 95  gccgctgctgctcgccatggcgcg 72



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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    ctgccggcgtctccgctgct 117
             ||||||||||||||||||||
Sbjct: 21719 ctgccggcgtctccgctgct 21738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,547,482
Number of Sequences: 3902068
Number of extensions: 1547482
Number of successful extensions: 35153
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34887
Number of HSP's gapped (non-prelim): 266
length of query: 261
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 239
effective length of database: 17,147,199,772
effective search space: 4098180745508
effective search space used: 4098180745508
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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