ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet27g10 |
|---|---|
| Clone Library Name | barley_pub |
>BSPB_POPDE (Q09117) Bark storage protein B precursor| Length = 312 Score = 48.5 bits (114), Expect = 7e-06 Identities = 21/50 (42%), Positives = 33/50 (66%) Frame = +3 Query: 294 NMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHW 443 ++DI GRRF GT+ G S+V V TG +N T Q+LL+ F + G++++ Sbjct: 56 SVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMATTLQILLARFSIHGVIYF 105
>BSPA_POPDE (Q07469) Bark storage protein A precursor| Length = 312 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/50 (42%), Positives = 32/50 (64%) Frame = +3 Query: 294 NMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLFRVKGIVHW 443 ++DI GRRF GT+ G S+V V TG +N T Q+LL F + G++++ Sbjct: 56 SVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMATTLQILLVRFNIHGVIYF 105
>Y2293_MYCTU (Q50673) Hypothetical protein Rv2293c/MT2350 precursor| Length = 246 Score = 34.7 bits (78), Expect = 0.11 Identities = 14/36 (38%), Positives = 24/36 (66%) Frame = +3 Query: 312 RRFRFGTIEGQSVVMVMTGLSMLNAGLTTQMLLSLF 419 RR+ G+I G+ V++ MTG+ ++NA TT+ + F Sbjct: 69 RRYYLGSISGKKVIVAMTGIGLVNATNTTETAFARF 104
>ASSY_STRMU (Q8CWZ0) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 396 Score = 33.9 bits (76), Expect = 0.18 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%) Frame = -1 Query: 422 PEQAQQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAG-HEA 267 PE+A G SVE A ++ D +A DG + K + L + + LAG H Sbjct: 196 PEEA---FGITNSVEEAPDKAEYVDITFKEGKPVALDGQEMKLADL-IQKLNVLAGKHGV 251 Query: 266 GRLEH-RNHLVGVGHDEADERPGAV 195 GR++H N LVG+ E E PGAV Sbjct: 252 GRIDHVENRLVGIKSREIYECPGAV 276
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 33.1 bits (74), Expect = 0.31 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +2 Query: 278 QQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWSDHP 400 QQ+ H H + + L NH +++ HD + Q++ DHP Sbjct: 200 QQQQQFHDHQQQQQQLHNHHHQQQQQFHDYPQQQQQFHDHP 240
>ASSY_BACLD (Q65G67) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.6 bits (70), Expect = 0.91 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1 Query: 344 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 195 ++ DG+ S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGTHYPLSDLILKLNELAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>CDC54_YEAST (P30665) Cell division control protein 54| Length = 933 Score = 31.6 bits (70), Expect = 0.91 Identities = 20/60 (33%), Positives = 27/60 (45%) Frame = +3 Query: 222 VVPNTYEMVPVLKSPSFVASKSIPNMDIQGRRFRFGTIEGQSVVMVMTGLSMLNAGLTTQ 401 VVPN + P L SP+ S S DI GR +G+ + G S LN ++Q Sbjct: 19 VVPNPDSVPPQLSSPALFYSSSSSQGDIYGRNNSQNLSQGEGNIRAAIGSSPLNFPSSSQ 78
>ASSY_BACSU (O34347) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 403 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 344 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 195 ++ DG S L + + + H GR++H N LVG+ E E PGA+ Sbjct: 228 VSIDGVSYSLSELILKLNEMAGAHGVGRIDHVENRLVGIKSREVYECPGAM 278
>HUTI_PSESM (Q87UL9) Imidazolonepropionase (EC 3.5.2.7)| (Imidazolone-5-propionate hydrolase) Length = 401 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/67 (25%), Positives = 27/67 (40%) Frame = -1 Query: 359 DHDDALAFDGSKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADG 180 +HD+ + G+ P +D H G+ +G E R L GV + E G + Sbjct: 46 EHDNCIDLGGAWVTPGLIDCHTHTVFGGNRSGEFEQR--LQGVSYAEIAAAGGGIASTVR 103 Query: 179 CPRLLSD 159 R S+ Sbjct: 104 ATRAASE 110
>MAP2_MOUSE (P20357) Microtubule-associated protein 2 (MAP 2)| Length = 1828 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 422 PEQAQQHLGGQTSVEHAQSCHDHDDALAFDGSKAKPSPLDVHVRD 288 PE+ ++ L V + D L F +KA+PS LD+ V D Sbjct: 1014 PEKTEKGLSSVPEVAEVEPTTKADQGLDFAATKAEPSQLDIKVSD 1058
>ASSY_GEOKA (Q5KW94) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 406 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Frame = -1 Query: 326 KAKPSPLDVHVRDALAG-HEAGRLEH-RNHLVGVGHDEADERPGAV 195 KA P + +ALAG H GR++H N LVG+ E E PGA+ Sbjct: 232 KAYPLAQLILELNALAGKHGVGRIDHVENRLVGIKSREVYECPGAI 277
>ASSY_STRR6 (Q8DRI5) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 398 Score = 29.6 bits (65), Expect = 3.5 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 8/84 (9%) Frame = -1 Query: 422 PEQAQQHLGGQTSVEHAQSCHDHDDA-------LAFDGSKAKPSPLDVHVRDALAGHEAG 264 PE+A G TS E A ++ + ++ +G K + L + + H G Sbjct: 196 PEEA---FGITTSPEQAPDMPEYIEIEFSEGVPVSLNGEVLKLADLIQKLNEIAGKHGVG 252 Query: 263 RLEH-RNHLVGVGHDEADERPGAV 195 R++H N LVG+ E E PGAV Sbjct: 253 RIDHVENRLVGIKSREIYECPGAV 276
>GCH1_CAEEL (Q19980) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)| Length = 223 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 333 IEGQSVVMVMTGLSMLNAGLTTQMLLSLFR 422 IE + MVM G+ +NA TT +L +FR Sbjct: 178 IEASHMCMVMRGVQKINASTTTSCMLGVFR 207
>ASSY_STRT2 (Q5M2K2) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 344 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 195 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>ASSY_STRT1 (Q5LXZ8) Argininosuccinate synthase (EC 6.3.4.5)| (Citrulline--aspartate ligase) Length = 399 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Frame = -1 Query: 344 LAFDGSKAKPSPLDVHVRDALAGHEAGRLEH-RNHLVGVGHDEADERPGAV 195 +A +G + K + L + H GR++H N LVG+ E E PGA+ Sbjct: 226 VALNGKEMKLADLIQEMNVIAGKHGVGRIDHVENRLVGIKSREIYECPGAI 276
>MAAY3_SCHCO (P37934) Mating-type protein A-alpha Y3| Length = 926 Score = 29.6 bits (65), Expect = 3.5 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -2 Query: 391 RPALSMLSPVMTMTTLWPSMVPK-RNLRP-WMSMLGMLLLATKLGDLSTGTIS*VLGTTR 218 +PA S S T + + ++P+ N P W +++GM T + GT S LG T Sbjct: 830 QPAASFDSSSETSSMDFNWLLPQCANTAPDWSALIGMTPSTTSQIHVLGGTYSCELGGTN 889 Query: 217 PTNGPARFA 191 TN P FA Sbjct: 890 TTNAPLNFA 898
>NORR2_RALEU (Q9K4U8) Nitric oxide reductase transcription regulator norR2| Length = 521 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/58 (34%), Positives = 23/58 (39%) Frame = -1 Query: 329 SKAKPSPLDVHVRDALAGHEAGRLEHRNHLVGVGHDEADERPGAVRPADGCPRLLSDV 156 S+ + PL VHV A E H G ERPG ADG P L +V Sbjct: 238 SRRRAQPL-VHVNCAALPESLAESELFGHARGAFSGATGERPGRFEAADGQPLFLDEV 294
>SEPP1_BOVIN (P49907) Selenoprotein P-like protein precursor| Length = 402 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/60 (33%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Frame = +2 Query: 263 AQLRGQQEHP*HGHPRAKVSLWNHRRPKRRHGHDRTEHAQRWS----DHPDAAEPVPGEG 430 A R HP H HP H P HGH E+A D PD E P G Sbjct: 200 ASQRHHHPHP-HSHPHPHPHPHPHPHPHPHHGHQLHENAHLSESPKPDTPDTPENPPTSG 258
>KHSE_PYRHO (O58814) Homoserine kinase (EC 2.7.1.39) (HSK) (HK)| Length = 293 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/49 (36%), Positives = 26/49 (53%) Frame = -2 Query: 397 VVRPALSMLSPVMTMTTLWPSMVPKRNLRPWMSMLGMLLLATKLGDLST 251 VV P + + P + PSMVP ++ ++M L+LA K GDL T Sbjct: 164 VVLPEVEI--PTAKARKILPSMVPLKDAVKNIAMASSLILALKEGDLET 210
>AMSL_ERWAM (Q46639) Amylovoran biosynthesis protein amsL| Length = 388 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%) Frame = -2 Query: 424 TRNRLSSIWVVRPALSMLSPVMTMTTLWPSMVPKRNLRPW---MSMLGMLLLATKLGDLS 254 TR S+I+ V LSML+ ++ + WP W + LG L++ T L L Sbjct: 12 TRKEQSTIYWVNVLLSMLTGLLLVAIAWPI--------SWFYHLPQLGGLIMLTSLNFLV 63 Query: 253 TGTIS 239 G++S Sbjct: 64 LGSLS 68
>ZEP1_MOUSE (Q03172) Zinc finger protein 40 (Transcription factor alphaA-CRYBP1)| (Alpha A-crystallin-binding protein I) (Alpha A-CRYBP1) Length = 2688 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +1 Query: 181 PSAGRTAPGRSSASSCPTPT 240 PSAG PGRS A + P PT Sbjct: 2618 PSAGHVLPGRSPAQAQPAPT 2637
>LON_BRUSU (Q8G0I7) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 315 RFRFGTIEGQSVVMVMTGLSMLNAG 389 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUME (Q8YHC6) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 315 RFRFGTIEGQSVVMVMTGLSMLNAG 389 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUAB (P0C113) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 315 RFRFGTIEGQSVVMVMTGLSMLNAG 389 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>LON_BRUA2 (Q2YPX3) ATP-dependent protease La (EC 3.4.21.53)| Length = 812 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +3 Query: 315 RFRFGTIEGQSVVMVMTGLSMLNAG 389 +FRFG I+G+ V V+TGL+ G Sbjct: 593 KFRFGQIDGEDQVGVVTGLAWTEVG 617
>ZN358_HUMAN (Q9NW07) Zinc finger protein 358| Length = 481 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = -1 Query: 332 GSKAKPSPLDVHVRDALAGHEAG 264 GS++ PSP V D AGH+AG Sbjct: 394 GSRSTPSPTPVESSDPKAGHDAG 416
>RS5_CAMJR (Q5HSA7) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 8.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -1 Query: 254 HRNHLVGVGHDEADERPGAVRPA 186 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 8.7 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 178 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 53 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121
>RS5_CAMJE (Q9PLY8) 30S ribosomal protein S5| Length = 147 Score = 26.2 bits (56), Expect(2) = 8.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -1 Query: 254 HRNHLVGVGHDEADERPGAVRPA 186 +R LVGVG+ +A E P A+R A Sbjct: 39 NRKGLVGVGYGKAKEVPDAIRKA 61 Score = 20.8 bits (42), Expect(2) = 8.7 Identities = 12/42 (28%), Positives = 21/42 (50%) Frame = -2 Query: 178 AHVF*VMYPSAAVAISVTATRTTAMSCCRTPPMVELAPFLDM 53 AH V Y ++ + + + T ++ T P+VELA D+ Sbjct: 80 AHDVEVKYNASRILLKPASEGTGVIAGGSTRPIVELAGIKDI 121 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,768,891 Number of Sequences: 219361 Number of extensions: 1156634 Number of successful extensions: 3879 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3748 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3869 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
