| Clone Name | baet27g07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_188605.1| Oryza sativa (japonica cultivar-group), Ozsa8208 predicted mRNA Length = 996 Score = 103 bits (52), Expect = 5e-19 Identities = 70/76 (92%) Strand = Plus / Plus Query: 376 gctggtctgaccacccagatgctgctgagcctgttccgggtgaagggcatcgtccactgg 435 ||||| ||||| |||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 229 gctgggctgacgacccagctgctgctgagcctgttcagggtgaagggcatcgtgcactgg 288 Query: 436 ggcatcgctggcaacg 451 |||||||| ||||||| Sbjct: 289 ggcatcgccggcaacg 304 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/115 (84%), Gaps = 4/115 (3%) Strand = Plus / Plus Query: 127 atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 186 ||||| |||||||||||||||| |||| | |||||||||| | ||| |||| |||||| Sbjct: 43 atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 102 Query: 187 aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 238 ||| || | |||||||||||| ||| |||||||||||||| |||||||||||| Sbjct: 103 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 156
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 5e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 376 gctggtctgaccacccagatgctgctgagcctgttccgggtgaagggcatcgtccactgg 435 ||||| ||||| |||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 7185808 gctgggctgacgacccagctgctgctgagcctgttcagggtgaagggcatcgtgcactgg 7185749 Query: 436 ggcatcgctggcaacg 451 |||||||| ||||||| Sbjct: 7185748 ggcatcgccggcaacg 7185733 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/115 (84%), Gaps = 4/115 (3%) Strand = Plus / Minus Query: 127 atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 186 ||||| |||||||||||||||| |||| | |||||||||| | ||| |||| |||||| Sbjct: 7187148 atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 7187089 Query: 187 aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 238 ||| || | |||||||||||| ||| |||||||||||||| |||||||||||| Sbjct: 7187088 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 7187035 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 299 aagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatgacag 358 |||| |||||||||||||| || |||| | ||||||| ||| |||||||||||||||| Sbjct: 7186079 aaggacgaaggtttcgcttcggtgccattgggggccaaaacgttgtcatggtcatgacag 7186020 Query: 359 gactgagcatg 369 | || |||||| Sbjct: 7186019 ggcttagcatg 7186009
>dbj|AP001859.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485D09 Length = 150594 Score = 103 bits (52), Expect = 5e-19 Identities = 70/76 (92%) Strand = Plus / Minus Query: 376 gctggtctgaccacccagatgctgctgagcctgttccgggtgaagggcatcgtccactgg 435 ||||| ||||| |||||| ||||||||||||||||| |||||||||||||||| |||||| Sbjct: 80456 gctgggctgacgacccagctgctgctgagcctgttcagggtgaagggcatcgtgcactgg 80397 Query: 436 ggcatcgctggcaacg 451 |||||||| ||||||| Sbjct: 80396 ggcatcgccggcaacg 80381 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/115 (84%), Gaps = 4/115 (3%) Strand = Plus / Minus Query: 127 atggccacggcggcggaggggtacatcactcagaagacgtgggcagccatccgccgggcg 186 ||||| |||||||||||||||| |||| | |||||||||| | ||| |||| |||||| Sbjct: 81796 atggcgacggcggcggaggggttcatctcggcgaagacgtggtcggccgtccggcgggcg 81737 Query: 187 aac---cgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacgagatgg 238 ||| || | |||||||||||| ||| |||||||||||||| |||||||||||| Sbjct: 81736 aacgaccgtggcgggccgttcgtgggc-tcgtcgtgcccaacgcctacgagatgg 81683 Score = 54.0 bits (27), Expect = 4e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 299 aagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatgacag 358 |||| |||||||||||||| || |||| | ||||||| ||| |||||||||||||||| Sbjct: 80727 aaggacgaaggtttcgcttcggtgccattgggggccaaaacgttgtcatggtcatgacag 80668 Query: 359 gactgagcatg 369 | || |||||| Sbjct: 80667 ggcttagcatg 80657
>gb|AY108102.1| Zea mays PCO073188 mRNA sequence Length = 408 Score = 75.8 bits (38), Expect = 1e-10 Identities = 104/126 (82%) Strand = Plus / Plus Query: 114 ggcggtgacgctaatggccacggcggcggaggggtacatcactcagaagacgtgggcagc 173 ||||||| ||| ||||| |||||| ||||||| | |||| | ||||||||||| || Sbjct: 166 ggcggtggtgctcatggcaacggcgtcggagggcttcatctccaagaagacgtggagcgc 225 Query: 174 catccgccgggcgaaccgcgccgggccgttcgtcggcctcgtcgtgcccaacacctacga 233 |||||| |||||| |||||| |||||| ||||| || || || ||||||||| ||||||| Sbjct: 226 catccggcgggcggaccgcgacgggcccttcgtggggctggtggtgcccaacgcctacga 285 Query: 234 gatggt 239 |||||| Sbjct: 286 gatggt 291 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Plus Query: 296 tccaagggcgaaggtttcgctttggaaccatcgaaggccaaagcgtcgtcatggtcatga 355 ||||||||||| | || ||||| ||||| || | | |||||| ||| ||||||||||||| Sbjct: 348 tccaagggcgacgattccgcttcggaactattggaagccaaaacgttgtcatggtcatga 407 Query: 356 c 356 | Sbjct: 408 c 408
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 48.1 bits (24), Expect = 0.025 Identities = 27/28 (96%) Strand = Plus / Plus Query: 199 ccgttcgtcggcctcgtcgtgcccaaca 226 |||||||||||||||||||| ||||||| Sbjct: 4982931 ccgttcgtcggcctcgtcgtccccaaca 4982958
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 113 tggcggtgacgctaatggccacggcggcgg 142 ||||||| ||||||||||||| |||||||| Sbjct: 128654 tggcggtcacgctaatggccaaggcggcgg 128683
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 113 tggcggtgacgctaatggccacggcggcgg 142 ||||||| ||||||||||||| |||||||| Sbjct: 18486224 tggcggtcacgctaatggccaaggcggcgg 18486253
>gb|AC104275.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1212_C10, complete sequence Length = 138209 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 419 agggcatcgtccactggggcatcgctggcaacg 451 ||||||||||||||| |||||||| ||||||| Sbjct: 112447 agggcatcgtccacttcggcatcgccggcaacg 112415
>emb|AL354826.6| Human DNA sequence from clone RP11-286M16 on chromosome 1 Contains a novel gene, complete sequence Length = 203279 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 agatgctgctgagcctgttcc 412 ||||||||||||||||||||| Sbjct: 132755 agatgctgctgagcctgttcc 132735
>gb|DQ118863.1| Streptomyces fradiae strain NRRL18158 lipopeptide antibiotic A54145 biosynthetic gene cluster, complete sequence Length = 126933 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 128 tggccacggcggcggaggggt 148 ||||||||||||||||||||| Sbjct: 27070 tggccacggcggcggaggggt 27090
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 419 agggcatcgtccactggggcatcgctggcaacg 451 ||||||||||||||| |||||||| ||||||| Sbjct: 7676052 agggcatcgtccacttcggcatcgccggcaacg 7676020
>dbj|AK101642.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033055L05, full insert sequence Length = 1387 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 419 agggcatcgtccactggggcatcgctggcaacg 451 ||||||||||||||| |||||||| ||||||| Sbjct: 520 agggcatcgtccacttcggcatcgccggcaacg 552
>dbj|AK064229.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-H04, full insert sequence Length = 1470 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Plus Query: 419 agggcatcgtccactggggcatcgctggcaacg 451 ||||||||||||||| |||||||| ||||||| Sbjct: 603 agggcatcgtccacttcggcatcgccggcaacg 635
>gb|AC123528.2| Oryza sativa chromosome 11 clone OSJNBa0078E03, complete sequence Length = 149493 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggccacggcggcggaggggt 148 |||||||||||||||||||| Sbjct: 122382 ggccacggcggcggaggggt 122401 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 ggccacggcggcggaggggt 148 |||||||||||||||||||| Sbjct: 117551 ggccacggcggcggaggggt 117532
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 agatgctgctgagcctgttc 411 |||||||||||||||||||| Sbjct: 1737145 agatgctgctgagcctgttc 1737126
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttcgtcggcctcgtcgtgcc 221 |||||||||||||||||||| Sbjct: 2901101 ttcgtcggcctcgtcgtgcc 2901082
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 156 tcagaagacgtgggcagccatccgccgg 183 ||||||||| |||||| ||||||||||| Sbjct: 3462345 tcagaagacttgggcaaccatccgccgg 3462372
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ccgggcgaaccgcgccgggc 199 |||||||||||||||||||| Sbjct: 2930937 ccgggcgaaccgcgccgggc 2930956
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ccgggcgaaccgcgccgggc 199 |||||||||||||||||||| Sbjct: 58310 ccgggcgaaccgcgccgggc 58329
>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16 Length = 349640 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 199 ccgttcgtcggcctcgtcgtgcccaaca 226 ||||||||||| |||||||| ||||||| Sbjct: 260525 ccgttcgtcgggctcgtcgtccccaaca 260498
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 ccgggcgaaccgcgccgggc 199 |||||||||||||||||||| Sbjct: 3903912 ccgggcgaaccgcgccgggc 3903931
>emb|AJ621385.1| Gallus gallus RAD50 gene (partial), IL5 gene, IRF1 gene, OCTN2 gene and OCTN1 gene (partial) Length = 113629 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 aaggccaaagcgtcgtcatggtca 352 ||||||||| |||||||||||||| Sbjct: 98145 aaggccaaaacgtcgtcatggtca 98168
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 gaaccgcgccgggccgttcg 205 |||||||||||||||||||| Sbjct: 3054010 gaaccgcgccgggccgttcg 3053991
>gb|AC105264.3| Drosophila melanogaster 3L BAC RP98-17K18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 177583 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcgcccagcttcgtggcc 270 |||||||||||||||||||| Sbjct: 139683 agtcgcccagcttcgtggcc 139702
>gb|AC010118.8| Drosophila melanogaster 3L BAC RP98-10D15 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171868 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcgcccagcttcgtggcc 270 |||||||||||||||||||| Sbjct: 26990 agtcgcccagcttcgtggcc 27009
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ttcgtcggcctcgtcgtgcc 221 |||||||||||||||||||| Sbjct: 294762 ttcgtcggcctcgtcgtgcc 294781
>ref|NM_206235.1| Drosophila melanogaster CG13921-RB, transcript variant B (CG13921), mRNA Length = 4265 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcgcccagcttcgtggcc 270 |||||||||||||||||||| Sbjct: 3389 agtcgcccagcttcgtggcc 3408
>ref|NM_139399.1| Drosophila melanogaster CG13921-RA, transcript variant A (CG13921), mRNA Length = 4857 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcgcccagcttcgtggcc 270 |||||||||||||||||||| Sbjct: 3971 agtcgcccagcttcgtggcc 3990
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggccacggcggcggaggggt 148 |||||||||||||||||||| Sbjct: 1758208 ggccacggcggcggaggggt 1758227
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 255 gcccagcttcgtggccagcaagagcatc 282 ||||||||||||||| | |||||||||| Sbjct: 18607119 gcccagcttcgtggcaaacaagagcatc 18607146
>gb|AF448145.2| Myxococcus xanthus che3 chemosensory regulator gene cluster, complete sequence Length = 17906 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tcgcccagcttcgtggccag 272 |||||||||||||||||||| Sbjct: 17872 tcgcccagcttcgtggccag 17891
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 agcttcgtggccagcaagag 278 |||||||||||||||||||| Sbjct: 478483 agcttcgtggccagcaagag 478502
>dbj|AP005468.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0020P04 Length = 153894 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 255 gcccagcttcgtggccagcaagagcatc 282 ||||||||||||||| | |||||||||| Sbjct: 59222 gcccagcttcgtggcaaacaagagcatc 59249
>gb|AE003472.1| Drosophila melanogaster chromosome 3L, section 6 of 83 of the complete sequence Length = 303191 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcgcccagcttcgtggcc 270 |||||||||||||||||||| Sbjct: 216811 agtcgcccagcttcgtggcc 216830
>gb|AC005557.1|AC005557 Drosophila melanogaster, chromosome 3L, region 62A10-62B5, P1 clones DS02777, DS03222, DS02345, and DS04808, complete sequence Length = 257867 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcgcccagcttcgtggcc 270 |||||||||||||||||||| Sbjct: 139977 agtcgcccagcttcgtggcc 139996
>gb|BT001721.1| Drosophila melanogaster RE69223 full insert cDNA Length = 4287 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 agtcgcccagcttcgtggcc 270 |||||||||||||||||||| Sbjct: 3388 agtcgcccagcttcgtggcc 3407
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 ggccacggcggcggaggggt 148 |||||||||||||||||||| Sbjct: 1755929 ggccacggcggcggaggggt 1755948
>dbj|AP006360.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT42D17, TM0108, complete sequence Length = 117124 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 95 tcatggccgtcgtcctcgtg 114 |||||||||||||||||||| Sbjct: 55182 tcatggccgtcgtcctcgtg 55201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,695,047 Number of Sequences: 3902068 Number of extensions: 2695047 Number of successful extensions: 56852 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56023 Number of HSP's gapped (non-prelim): 826 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)