>emb|AJ222778.1|HVJ222778 Hordeum vulgare mRNA for putative thiol protease, clone RG42
          Length = 350

 Score =  107 bits (54), Expect = 3e-21
 Identities = 54/54 (100%)
 Strand = Plus / Plus

                                                                
Query: 14 ggagacatggctttcatgcgctcgtcgtcctcatccgtggctctcgctctgctg 67
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggagacatggctttcatgcgctcgtcgtcctcatccgtggctctcgctctgctg 54

>ref|XM_875336.1| PREDICTED: Bos taurus cadherin 3, P-cadherin (placental), transcript
            variant 6 (CDH3), mRNA
          Length = 3476

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cgtcgtcctcatccgtggct 55
            ||||||||||||||||||||
Sbjct: 1062 cgtcgtcctcatccgtggct 1043

>ref|XM_875263.1| PREDICTED: Bos taurus cadherin 3, P-cadherin (placental), transcript
            variant 5 (CDH3), mRNA
          Length = 3464

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cgtcgtcctcatccgtggct 55
            ||||||||||||||||||||
Sbjct: 1062 cgtcgtcctcatccgtggct 1043

>ref|XM_875199.1| PREDICTED: Bos taurus cadherin 3, P-cadherin (placental), transcript
            variant 4 (CDH3), mRNA
          Length = 3464

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cgtcgtcctcatccgtggct 55
            ||||||||||||||||||||
Sbjct: 1062 cgtcgtcctcatccgtggct 1043

>ref|XM_875131.1| PREDICTED: Bos taurus cadherin 3, P-cadherin (placental), transcript
            variant 3 (CDH3), mRNA
          Length = 3272

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cgtcgtcctcatccgtggct 55
            ||||||||||||||||||||
Sbjct: 1062 cgtcgtcctcatccgtggct 1043

>ref|XM_614683.2| PREDICTED: Bos taurus cadherin 3, P-cadherin (placental), transcript
            variant 1 (CDH3), mRNA
          Length = 3461

 Score = 40.1 bits (20), Expect = 0.65
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 36   cgtcgtcctcatccgtggct 55
            ||||||||||||||||||||
Sbjct: 1062 cgtcgtcctcatccgtggct 1043

>dbj|AK082351.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230040D14
            product:unclassifiable, full insert sequence
          Length = 2712

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 48   ccgtggctctcgctctgct 66
            |||||||||||||||||||
Sbjct: 2409 ccgtggctctcgctctgct 2391

>gb|AE006470.1| Chlorobium tepidum TLS, complete genome
          Length = 2154946

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 19      catggctttcatgcgctcg 37
               |||||||||||||||||||
Sbjct: 1802361 catggctttcatgcgctcg 1802379

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 27      tcatgcgctcgtcgtcctc 45
               |||||||||||||||||||
Sbjct: 8003439 tcatgcgctcgtcgtcctc 8003421

>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0046H10
          Length = 155544

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 27     tcatgcgctcgtcgtcctc 45
              |||||||||||||||||||
Sbjct: 110957 tcatgcgctcgtcgtcctc 110939

>dbj|AP003490.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592E11
          Length = 153734

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 27    tcatgcgctcgtcgtcctc 45
             |||||||||||||||||||
Sbjct: 27208 tcatgcgctcgtcgtcctc 27190

>gb|AC132121.3| Mus musculus BAC clone RP24-62L21 from 13, complete sequence
          Length = 204277

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    ccgtggctctcgctctgct 66
             |||||||||||||||||||
Sbjct: 20462 ccgtggctctcgctctgct 20444

>gb|AC140415.3| Mus musculus BAC clone RP23-127A20 from 13, complete sequence
          Length = 221245

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 48     ccgtggctctcgctctgct 66
              |||||||||||||||||||
Sbjct: 217442 ccgtggctctcgctctgct 217424


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 319,228
Number of Sequences: 3902068
Number of extensions: 319228
Number of successful extensions: 23554
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23510
Number of HSP's gapped (non-prelim): 44
length of query: 67
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 46
effective length of database: 17,151,101,840
effective search space: 788950684640
effective search space used: 788950684640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)