ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet27c03 |
|---|---|
| Clone Library Name | barley_pub |
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 32.3 bits (72), Expect = 0.27 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +3 Query: 192 VQPQPNQLTYHNGAVLHGDIPVSVLWYGRFTAAQKAI 302 +Q P +L Y + VLH ++ VS+LW G AI Sbjct: 1318 IQYSPARLAYQDKGVLHNEVKVSILWRGLPNVVTSAI 1354
>EFP_MYCPA (Q741J3) Elongation factor P (EF-P)| Length = 187 Score = 30.8 bits (68), Expect = 0.80 Identities = 12/26 (46%), Positives = 20/26 (76%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ P Q+ +HNG+ L+ ++PVSV Sbjct: 104 FLLEGMPVQVAFHNGSPLYIELPVSV 129
>EFP_MYCTU (P64034) Elongation factor P (EF-P)| Length = 187 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ P Q+ +HNG L+ ++PV+V Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129
>EFP_MYCBO (P64035) Elongation factor P (EF-P)| Length = 187 Score = 29.3 bits (64), Expect = 2.3 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ P Q+ +HNG L+ ++PV+V Sbjct: 104 FLLEGMPVQVAFHNGVPLYIELPVTV 129
>SYV_NEIG1 (Q5F5W0) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 945 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = -1 Query: 287 RREAAVPEDGDGDVAVQHGAVVVRELVRLGLDQEHELPR 171 R+ AA+PE GD VAV +GA R ++++ +D+ E R Sbjct: 851 RQVAALPESGDAPVAVCNGA---RLMLKVEIDKAAETAR 886
>EFP_COREF (Q8FT34) Elongation factor P (EF-P)| Length = 187 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ Q+++H+G L G++PVSV Sbjct: 104 FLLENMRVQVSFHDGEALFGELPVSV 129
>IP6K1_RAT (Q9ESM0) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 433 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -1 Query: 263 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEEEASL 96 D DG + + V E V E E PR + SRR H SG +EE+ASL Sbjct: 84 DSDGYINLVAYPYVESETVEQDDTPEREQPRRKHSRRSLHRSGSGS-DHKEEKASL 138
>IP6K1_MOUSE (Q6PD10) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 433 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -1 Query: 263 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEEEASL 96 D DG + + V E V E E PR + SRR H SG +EE+ASL Sbjct: 84 DSDGYINLVAYPYVESETVEQDDTPEREQPRRKHSRRSLHRSGSGS-DHKEEKASL 138
>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2| Length = 769 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/55 (29%), Positives = 22/55 (40%) Frame = +2 Query: 47 NLFPRSKPFFLPSPNGQEKXXXXXGANGARR*HGSRVGYREHEEAHVPGPAPAEP 211 N +P+ +P P+P+ K N A GY H PGP P +P Sbjct: 608 NTYPQWQP---PAPHDPSKAAAAADPNAAW------AGYYSHYYQQPPGPVPGQP 653
>IP6K1_HUMAN (Q92551) Inositol hexaphosphate kinase 1 (EC 2.7.4.21) (InsP6| kinase 1) (Inositol hexakisphosphate kinase 1) Length = 441 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/56 (37%), Positives = 26/56 (46%) Frame = -1 Query: 263 DGDGDVAVQHGAVVVRELVRLGLDQEHELPRARGSRRGCHVSGERH*RQEEEEASL 96 D DG + + V E V E E PR + SRR H SG +EE+ASL Sbjct: 84 DSDGYINLVAYPYVESETVEQDDTTEREQPRRKHSRRSLHRSGSGS-DHKEEKASL 138
>UBAX1_ARATH (Q7Y175) UBA and UBX domain-containing protein At4g15410| Length = 421 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +2 Query: 2 TPSQTAPYKTRTRTQNLFPRSKPFFLPSPNGQEKXXXXXGANGAR 136 TPS+T+P +R+R+ + R+ P+ L S G + +G R Sbjct: 80 TPSETSPSPSRSRSASPSSRAAPYGLRSRGGAGENKETENPSGIR 124
>EFP_CORGL (Q45288) Elongation factor P (EF-P)| Length = 187 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/26 (42%), Positives = 18/26 (69%) Frame = +3 Query: 186 FLVQPQPNQLTYHNGAVLHGDIPVSV 263 FL++ Q+++H G L G++PVSV Sbjct: 104 FLLENMRVQVSFHEGEALFGELPVSV 129
>DPYL3_XENLA (O13022) Dihydropyrimidinase-related protein 3 (DRP-3)| (Neural-specific protein 1) Length = 571 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/40 (35%), Positives = 20/40 (50%) Frame = +3 Query: 192 VQPQPNQLTYHNGAVLHGDIPVSVLWYGRFTAAQKAIVSD 311 + P P Y N + GD+ V+ + F+ AQKAI D Sbjct: 307 LSPDPTTPDYINSLLASGDLQVTGSAHATFSTAQKAIGKD 346
>COAD_CORGL (Q8NQU5) Phosphopantetheine adenylyltransferase (EC 2.7.7.3)| (Pantetheine-phosphate adenylyltransferase) (PPAT) (Dephospho-CoA pyrophosphorylase) Length = 160 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -1 Query: 251 DVAVQHGAVVVRELVRLGLDQEHELPRARGSRR 153 D +HG + + +R LD E+ELP A+ +RR Sbjct: 75 DYTTEHGIGALVKGLRSSLDYEYELPMAQMNRR 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,404,617 Number of Sequences: 219361 Number of extensions: 615093 Number of successful extensions: 2159 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 1994 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2134 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
