ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet26d10 |
|---|---|
| Clone Library Name | barley_pub |
>SMCA2_HUMAN (P51531) Probable global transcription activator SNF2L2 (EC| 3.6.1.-) (ATP-dependent helicase SMARCA2) (SNF2-alpha) (SWI/SNF-related matrix associated actin dependent regulator of chromatin subfamily A member 2) (hBRM) Length = 1586 Score = 30.4 bits (67), Expect = 2.0 Identities = 16/50 (32%), Positives = 22/50 (44%) Frame = -1 Query: 350 SYTSQGFSPPPVGKGASRRPITAHRPDRLSPWHGPLGAQAPLTWVGASGG 201 S G PP G G + P+ H +SP PLGA ++ + GG Sbjct: 93 SMKGTGMRPPHPGMGPPQSPMDQHSQGYMSPHPSPLGAPEHVSSPMSGGG 142
>BETA_RHILO (Q985M5) Choline dehydrogenase (EC 1.1.99.1) (CHD) (CDH)| Length = 550 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = -3 Query: 258 MARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAP 124 + R + G SA + RG+ + SH D DL+ F + A ++ P Sbjct: 423 LTREIFGQSAFDAFRGQEISPGSHVQSDDDLDVFIRDHAESAYHP 467
>PER1_HUMAN (O15534) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (hPER) Length = 1290 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/37 (43%), Positives = 22/37 (59%) Frame = -3 Query: 357 PLILHLSRIQPTARWEGSFEAANHGTSAGPT*PMARA 247 PL L+L +++ R EG+ A G+SAGP P A A Sbjct: 981 PLQLNLLQLEELPRAEGAAVAGGPGSSAGPPPPSAEA 1017
>PRGR_MOUSE (Q00175) Progesterone receptor (PR)| Length = 923 Score = 29.6 bits (65), Expect = 3.5 Identities = 20/59 (33%), Positives = 28/59 (47%) Frame = -3 Query: 255 ARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNCVNQR 79 A GG S+ V A +S ++L+ L P GSFAPL +P A +C+ R Sbjct: 432 AAVAGGPSSAAVSP----ASSSGSALECILYKAEAPPTQGSFAPLPCKPPAAASCLLPR 486
>INP5E_HUMAN (Q9NRR6) 72 kDa inositol polyphosphate 5-phosphatase (EC 3.1.3.36)| (Phosphatidylinositol-4,5-bisphosphate 5-phosphatase) (Phosphatidylinositol polyphosphate 5-phosphatase type IV) Length = 644 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +2 Query: 155 LNASKSESKLACDACARRSPRPTLGALAPPRAR 253 L + S LACD C+ RS + + LAP R++ Sbjct: 234 LGPGRPRSPLACDDCSLRSAKSSFSLLAPIRSK 266
>THIE_STAAR (Q6GEY4) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 213 Score = 29.3 bits (64), Expect = 4.5 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 358 PTYPTPLKDSAHRPLGREL 302 P YPTP K AH P+G E+ Sbjct: 135 PIYPTPSKHDAHTPVGPEM 153
>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) (Adipocyte determination- and differentiation-dependent factor 1) (ADD1) (Fragment) Length = 1024 Score = 29.3 bits (64), Expect = 4.5 Identities = 28/71 (39%), Positives = 35/71 (49%) Frame = -3 Query: 309 GSFEAANHGTSAGPT*PMARALGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSF 130 G F+A G G T P + GAS+P + +S ASL S LEAF P + Sbjct: 21 GLFDAPYAGGETGDTGPSSP---GASSPE-------SFSSPASLGSSLEAFLGGP-KVTP 69 Query: 129 APLAFQPSAMT 97 APL+ PSA T Sbjct: 70 APLSPPPSAPT 80
>PAR3L_HUMAN (Q8TEW8) Amyotrophic lateral sclerosis 2 chromosome region| candidate gene 19 protein (Partitioning-defective 3-like protein) (PAR3-L protein) (PAR3-beta) Length = 1205 Score = 28.9 bits (63), Expect = 5.9 Identities = 19/52 (36%), Positives = 23/52 (44%) Frame = -2 Query: 418 PRNK*NNVKSSGISLAPVRAPTYPTPLKDSAHRPLGRELRGGQSRHIGRTDL 263 PR +SL T+ PL DS LG L+G +SR G TDL Sbjct: 475 PRELKGEPDCCALSLETSEQLTFEIPLNDSGSAGLGVSLKGNKSRETG-TDL 525
>IL17C_HUMAN (Q9P0M4) Interleukin-17C precursor (IL-17C) (Cytokine CX2)| Length = 197 Score = 28.9 bits (63), Expect = 5.9 Identities = 20/52 (38%), Positives = 24/52 (46%) Frame = -3 Query: 246 LGGASAPNVGRGERRAQASHASLDSDLEAFSHNPAHGSFAPLAFQPSAMTNC 91 LG A + RG + QA +L S LEA SH H +PSA T C Sbjct: 44 LGQAPPHLLARGAKWGQALPVALVSSLEAASHRGRHE-------RPSATTQC 88
>PTH_NANEQ (P61235) Peptidyl-tRNA hydrolase (EC 3.1.1.29) (PTH)| Length = 115 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/26 (42%), Positives = 20/26 (76%) Frame = -3 Query: 225 NVGRGERRAQASHASLDSDLEAFSHN 148 ++G+G+ AQ +HASLD+ L+ + +N Sbjct: 12 DIGKGKLCAQVAHASLDAALKVYRNN 37
>THIE_STAAW (Q8NVH5) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 213 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 358 PTYPTPLKDSAHRPLGREL 302 P YPTP K AH P+G E+ Sbjct: 135 PIYPTPSKHDAHIPVGPEM 153
>THIE_STAAS (Q6G7L9) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 213 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 358 PTYPTPLKDSAHRPLGREL 302 P YPTP K AH P+G E+ Sbjct: 135 PIYPTPSKHDAHIPVGPEM 153
>THIE_STAAN (P66919) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 213 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 358 PTYPTPLKDSAHRPLGREL 302 P YPTP K AH P+G E+ Sbjct: 135 PIYPTPSKHDAHIPVGPEM 153
>THIE_STAAM (P66918) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 213 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 358 PTYPTPLKDSAHRPLGREL 302 P YPTP K AH P+G E+ Sbjct: 135 PIYPTPSKHDAHIPVGPEM 153
>THIE_STAAC (Q5HEA8) Thiamine-phosphate pyrophosphorylase (EC 2.5.1.3) (TMP| pyrophosphorylase) (TMP-PPase) (Thiamine-phosphate synthase) Length = 213 Score = 28.5 bits (62), Expect = 7.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = -2 Query: 358 PTYPTPLKDSAHRPLGREL 302 P YPTP K AH P+G E+ Sbjct: 135 PIYPTPSKHDAHIPVGPEM 153
>TBC17_HUMAN (Q9HA65) TBC1 domain family member 17| Length = 648 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -2 Query: 439 GTCPASDPRNK*NNVKSSGISLAPVRAPTYPTPLKDSAHRP 317 G P ++P + + +S + L+P RAP P P D+A +P Sbjct: 593 GLAPPAEPHSP--SPTASPLPLSPTRAPPTPPPSTDTAPQP 631 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,654,583 Number of Sequences: 219361 Number of extensions: 1318790 Number of successful extensions: 3861 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3672 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3852 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
