ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet26d08 |
|---|---|
| Clone Library Name | barley_pub |
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 50.4 bits (119), Expect = 2e-06 Identities = 23/33 (69%), Positives = 29/33 (87%) Frame = +1 Query: 331 GDAGYTAEPPEEAKVYVGNLPYDVDSERLAQLF 429 G G++ EPPEEAK++VGNLPYDVDSE+LA +F Sbjct: 44 GGQGFS-EPPEEAKLFVGNLPYDVDSEKLAGIF 75 Score = 36.2 bits (82), Expect = 0.034 Identities = 15/20 (75%), Positives = 18/20 (90%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLF 429 +VYVGNLP+DVD+ RL QLF Sbjct: 150 RVYVGNLPWDVDTSRLEQLF 169
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 49.3 bits (116), Expect = 4e-06 Identities = 24/36 (66%), Positives = 29/36 (80%), Gaps = 3/36 (8%) Frame = +1 Query: 331 GDAGYTAE---PPEEAKVYVGNLPYDVDSERLAQLF 429 G+AG T E P E+AK++VGNLPYD+DSE LAQLF Sbjct: 82 GEAGETEEYQEPSEDAKLFVGNLPYDIDSEGLAQLF 117 Score = 32.7 bits (73), Expect = 0.37 Identities = 11/20 (55%), Positives = 17/20 (85%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLF 429 ++YVGN+P+D+D RL Q+F Sbjct: 192 RIYVGNIPWDIDDARLEQVF 211
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 48.9 bits (115), Expect = 5e-06 Identities = 21/26 (80%), Positives = 25/26 (96%) Frame = +1 Query: 352 EPPEEAKVYVGNLPYDVDSERLAQLF 429 EPPE+AK++VGNLPYDVDSE LA+LF Sbjct: 131 EPPEDAKLFVGNLPYDVDSEGLARLF 156 Score = 31.2 bits (69), Expect = 1.1 Identities = 11/20 (55%), Positives = 16/20 (80%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLF 429 ++YVGN+P+ +D RL QLF Sbjct: 231 RIYVGNIPWGIDDARLEQLF 250
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 40.8 bits (94), Expect = 0.001 Identities = 18/26 (69%), Positives = 22/26 (84%) Frame = +1 Query: 352 EPPEEAKVYVGNLPYDVDSERLAQLF 429 EP EEAK++VGNL YDV+S+ LA LF Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLF 170 Score = 35.4 bits (80), Expect = 0.058 Identities = 15/20 (75%), Positives = 18/20 (90%) Frame = +1 Query: 370 KVYVGNLPYDVDSERLAQLF 429 +VYVGNLP+DVD+ RL QLF Sbjct: 245 RVYVGNLPWDVDNGRLEQLF 264
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 35.0 bits (79), Expect = 0.075 Identities = 17/31 (54%), Positives = 23/31 (74%), Gaps = 6/31 (19%) Frame = +1 Query: 355 PPEEA------KVYVGNLPYDVDSERLAQLF 429 PP+E K++VGNLP++VDS +LAQLF Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLF 111
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 33.1 bits (74), Expect = 0.29 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Frame = +1 Query: 349 AEPP---EEAKVYVGNLPYDVDSERLAQLF 429 AE P E+ K++VGNLP+ VDS LA LF Sbjct: 79 AEQPRFSEDLKLFVGNLPFSVDSAALAGLF 108
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 33.1 bits (74), Expect = 0.29 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%) Frame = +1 Query: 349 AEPP---EEAKVYVGNLPYDVDSERLAQLF 429 AE P E+ K++VGNLP+ VDS LA LF Sbjct: 78 AEQPRFSEDLKLFVGNLPFSVDSAALAGLF 107
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 32.0 bits (71), Expect = 0.64 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 331 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLF 429 GD G E + K++VGNLP+ DS LA+LF Sbjct: 73 GDDGVEEERNFSPDLKIFVGNLPFSADSAALAELF 107
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 31.6 bits (70), Expect = 0.83 Identities = 13/22 (59%), Positives = 19/22 (86%) Frame = +1 Query: 364 EAKVYVGNLPYDVDSERLAQLF 429 + K++VGNL ++VDS +LAQLF Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLF 119
>G3B2_MOUSE (P97379) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 30.4 bits (67), Expect = 1.9 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLF 429 P+ +++VGNLP+D+D L + F Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFF 351
>G3B2_HUMAN (Q9UN86) Ras-GTPase-activating protein-binding protein 2 (GAP| SH3-domain-binding protein 2) (G3BP-2) Length = 482 Score = 30.4 bits (67), Expect = 1.9 Identities = 10/24 (41%), Positives = 17/24 (70%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLF 429 P+ +++VGNLP+D+D L + F Sbjct: 328 PDSHQLFVGNLPHDIDENELKEFF 351
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 30.0 bits (66), Expect = 2.4 Identities = 11/27 (40%), Positives = 20/27 (74%) Frame = +1 Query: 349 AEPPEEAKVYVGNLPYDVDSERLAQLF 429 +E E ++YVGNLP+ + S +L+++F Sbjct: 108 SESVEGGRLYVGNLPFSMTSSQLSEIF 134
>RNP1_CAEEL (Q10667) RNA-binding protein rnp-1| Length = 305 Score = 30.0 bits (66), Expect = 2.4 Identities = 12/21 (57%), Positives = 18/21 (85%) Frame = +1 Query: 367 AKVYVGNLPYDVDSERLAQLF 429 +K++VGNLP +VDS +L Q+F Sbjct: 3 SKLFVGNLPDNVDSNKLKQVF 23
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 29.6 bits (65), Expect = 3.2 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 325 SGGDAGYTAEPPEEAKVYVGNLPYDVDSERLAQL 426 SG +AG PP VY+G++PYD E++ L Sbjct: 5 SGVNAGVQNNPPSRV-VYLGSIPYDQTEEQILDL 37
>RSP6_CAEEL (Q18409) Probable splicing factor, arginine/serine-rich 6| (RNA-binding protein srp-1) (CeSRp20) Length = 179 Score = 29.6 bits (65), Expect = 3.2 Identities = 12/22 (54%), Positives = 16/22 (72%) Frame = +1 Query: 364 EAKVYVGNLPYDVDSERLAQLF 429 +AKVYVG LP D S+ L ++F Sbjct: 2 DAKVYVGGLPSDATSQELEEIF 23
>DND1_MOUSE (Q6VY05) Dead end protein homolog 1 (RNA-binding motif,| single-stranded interacting protein 4) Length = 352 Score = 29.3 bits (64), Expect = 4.1 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 355 PPEEAKVYVGNLPYDVDSERLAQLF 429 PP ++VY+G LP DV +L LF Sbjct: 54 PPSGSEVYIGRLPQDVYEHQLIPLF 78
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 29.3 bits (64), Expect = 4.1 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = +1 Query: 373 VYVGNLPYDVDSERLAQLF 429 V+VGN+PYDV +++ ++F Sbjct: 9 VFVGNIPYDVSEQQMTEIF 27
>CASC3_HUMAN (O15234) Protein CASC3 (Cancer susceptibility candidate gene 3| protein) (Metastatic lymph node protein 51) (MLN 51 protein) (Barentsz protein) (Btz) Length = 703 Score = 29.3 bits (64), Expect = 4.1 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Frame = +3 Query: 15 SPARLPPL-------IPFSHHGHLRHDTRHVCGNGGLALPPRVRRPTQARPGVRLPPTHF 173 SPA LPP + H G H T N GL PP P Q P L PT+F Sbjct: 563 SPAPLPPQGMLVQPGMNLPHPGLHPHQTPAPLPNPGLYPPPVSMSPGQPPPQQLLAPTYF 622
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 28.9 bits (63), Expect = 5.4 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +1 Query: 361 EEAKVYVGNLPYDVDSERLAQLF 429 E+ KVYVGNLP DV + + +F Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIF 29
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 28.5 bits (62), Expect = 7.1 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +1 Query: 331 GDAGYTAEP--PEEAKVYVGNLPYDVDSERLAQLF 429 GD G E + K++VGNL + DS LA+LF Sbjct: 73 GDEGVEEERNFSPDLKIFVGNLLFSADSAALAELF 107
>G3BP_MOUSE (P97855) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 465 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLF 429 P+ ++++GNLP++VD L F Sbjct: 335 PDSHQLFIGNLPHEVDKSELKDFF 358
>SAT_RIFPS (Q54506) Sulfate adenylyltransferase (EC 2.7.7.4) (Sulfate| adenylate transferase) (SAT) (ATP-sulfurylase) Length = 437 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%) Frame = +3 Query: 48 SHHGHLR----HDTRHVCGNGGLALPPRVRRPTQARPGVRLPPTH 170 SH G LR H R + G G +A PP RP A+ + L P H Sbjct: 348 SHQGRLRTALRHQGREMLGQG-IAPPPEFSRPEVAKILMDLLPVH 391
>G3BP_HUMAN (Q13283) Ras-GTPase-activating protein-binding protein 1 (EC| 3.6.1.-) (ATP-dependent DNA helicase VIII) (GAP SH3-domain-binding protein 1) (G3BP-1) (HDH-VIII) Length = 466 Score = 28.1 bits (61), Expect = 9.2 Identities = 9/24 (37%), Positives = 16/24 (66%) Frame = +1 Query: 358 PEEAKVYVGNLPYDVDSERLAQLF 429 P+ ++++GNLP++VD L F Sbjct: 337 PDSHQLFIGNLPHEVDKSELKDFF 360 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.134 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,622,784 Number of Sequences: 219361 Number of extensions: 465680 Number of successful extensions: 2052 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 1919 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2050 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
