ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet26d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 76 4e-11
2dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D... 76 4e-11
3dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic D... 76 4e-11
4dbj|AK100995.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 4e-11
5ref|NM_190041.1| Oryza sativa (japonica cultivar-group), predic... 70 2e-09
6dbj|AK120801.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
7gb|AY837845.1| Bifidobacterium breve UCC 2003 GltRS (gltRS) gene... 42 0.56
8ref|XM_520265.1| PREDICTED: Pan troglodytes similar to RALGPS1 p... 40 2.2
9gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 2.2
10emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chro... 40 2.2
11gb|AY742785.1| Nitrosospira sp. NRS527 3-phosphoglycerate kinase... 40 2.2
12gb|AY742784.1| Nitrosospira sp. GS832 3-phosphoglycerate kinase ... 40 2.2
13gb|AF531102.1| Homo sapiens interleukin 1 receptor, type I (IL1R... 40 2.2
14gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 2.2
15dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
16gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) ch... 40 2.2
17gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete... 40 2.2
18emb|AJ340794.1|HSA340794 Homo sapiens genomic sequence surroundi... 40 2.2
19gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.2
20ref|NM_172491.1| Mus musculus RIKEN cDNA D130040H23 gene (D13004... 38 8.7
21gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, com... 38 8.7
22gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 compl... 38 8.7
23gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 38 8.7
24gb|AC164559.3| Mus musculus BAC clone RP23-198H17 from chromosom... 38 8.7
25emb|Z36773.1|TPNAPG T.pantotropha (LMD82.5) dctM, napA, napB, na... 38 8.7
26emb|BX936445.8| Zebrafish DNA sequence from clone DKEY-50O12 in ... 38 8.7
27ref|NM_001010963.1| Rattus norvegicus brain zinc finger protein ... 38 8.7
28gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 38 8.7
29emb|Y00548.1|RLNOD Rhizobium leguminosarum plasmid pRL1JI nodula... 38 8.7
30gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, com... 38 8.7
31gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 38 8.7
32gb|AE012324.1| Xanthomonas campestris pv. campestris str. ATCC 3... 38 8.7
33gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosom... 38 8.7
34gb|AC182430.2| Pan troglodytes BAC clone CH251-398I16 from chrom... 38 8.7
35dbj|AK138789.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 38 8.7
36gb|AC171275.2| Gallus gallus BAC clone CH261-87A5 from chromosom... 38 8.7
37gb|AC025467.5| Homo sapiens chromosome 5 clone CTD-2318K11, comp... 38 8.7
38gb|AC025464.5| Homo sapiens chromosome 5 clone CTD-2260C5, compl... 38 8.7
39gb|AC010608.7| Homo sapiens chromosome 5 clone CTB-3M24, complet... 38 8.7
40dbj|AK084981.1| Mus musculus 13 days embryo lung cDNA, RIKEN ful... 38 8.7
41dbj|AK051365.1| Mus musculus 12 days embryo spinal ganglion cDNA... 38 8.7
42gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 38 8.7
43dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
44dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
45dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
46gb|AF291751.1|AF291751 Propionibacterium freudenreichii plasmid ... 38 8.7
47ref|XM_573470.1| PREDICTED: Rattus norvegicus similar to brain Z... 38 8.7
48gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 38 8.7
49gb|AC141876.4| Mus musculus BAC clone RP24-289M9 from chromosome... 38 8.7
50dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
51dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.7
52gb|AE005045.1| Halobacterium sp. NRC-1 section 76 of 170 of the ... 38 8.7
53emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, co... 38 8.7
54dbj|AK108778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.7
55emb|AL133243.3|CNS01DUG BAC sequence from the SPG4 candidate reg... 38 8.7
56gb|BC088438.1| Rattus norvegicus brain zinc finger protein, mRNA... 38 8.7
57gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 38 8.7
58gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 38 8.7
59gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 8.7
60emb|AL731750.3|CNS08C7Z Oryza sativa chromosome 12, . BAC OJ1055... 38 8.7
61gb|AC130211.3| Mus musculus BAC clone RP24-261D2 from 1, complet... 38 8.7
62emb|AL133168.6|CNS01DU7 Human chromosome 14 DNA sequence BAC R-1... 38 8.7 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                            
Query: 116      gccatggcgcagagggcgctggagctgaccctgttttcgggcaaggacctcaaggacgtg 175
                ||||||||||||||| ||||||||||||| ||| | |||| |||||| ||||||||||||
Sbjct: 40967026 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 40966967

                  
Query: 176      aa 177
                ||
Sbjct: 40966966 aa 40966965
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>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0492G09
          Length = 142239

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                        
Query: 116  gccatggcgcagagggcgctggagctgaccctgttttcgggcaaggacctcaaggacgtg 175
            ||||||||||||||| ||||||||||||| ||| | |||| |||||| ||||||||||||
Sbjct: 3956 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 3897

              
Query: 176  aa 177
            ||
Sbjct: 3896 aa 3895
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>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423A12
          Length = 178649

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 56/62 (90%)
 Strand = Plus / Minus

                                                                         
Query: 116   gccatggcgcagagggcgctggagctgaccctgttttcgggcaaggacctcaaggacgtg 175
             ||||||||||||||| ||||||||||||| ||| | |||| |||||| ||||||||||||
Sbjct: 95451 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 95392

               
Query: 176   aa 177
             ||
Sbjct: 95391 aa 95390
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>dbj|AK100995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146J24, full
           insert sequence
          Length = 1371

 Score = 75.8 bits (38), Expect = 4e-11
 Identities = 56/62 (90%)
 Strand = Plus / Plus

                                                                       
Query: 116 gccatggcgcagagggcgctggagctgaccctgttttcgggcaaggacctcaaggacgtg 175
           ||||||||||||||| ||||||||||||| ||| | |||| |||||| ||||||||||||
Sbjct: 114 gccatggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtg 173

             
Query: 176 aa 177
           ||
Sbjct: 174 aa 175
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>ref|NM_190041.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1077

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                      
Query: 119 atggcgcagagggcgctggagctgaccctgttttcgggcaaggacctcaaggacgtgaa 177
           |||||||||||| ||||||||||||| ||| | |||| |||||| ||||||||||||||
Sbjct: 1   atggcgcagaggacgctggagctgacgctgatctcggccaaggatctcaaggacgtgaa 59
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>dbj|AK120801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M12, full
           insert sequence
          Length = 1353

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 55/62 (88%), Gaps = 1/62 (1%)
 Strand = Plus / Plus

                                                                       
Query: 116 gccatggcgcagagggcgctggagctgaccctgttttcgggcaaggacctcaaggacgtg 175
           ||||||||||||||| ||||||||||||| ||| | || ||| |||| ||||||||||||
Sbjct: 111 gccatggcgcagaggacgctggagctgacgctgatctc-ggccaggatctcaaggacgtg 169

             
Query: 176 aa 177
           ||
Sbjct: 170 aa 171
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>gb|AY837845.1| Bifidobacterium breve UCC 2003 GltRS (gltRS) gene, partial cds; ClpB
            (clpB) gene, complete cds; and permease gene, partial cds
          Length = 5579

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 109  gatcatcgccatggcgcagagggcg 133
            |||||||||||||||||||| ||||
Sbjct: 5281 gatcatcgccatggcgcagaaggcg 5257
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>ref|XM_520265.1| PREDICTED: Pan troglodytes similar to RALGPS1 protein (LOC464742),
           mRNA
          Length = 860

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 22  cccaaattcccaatccacag 41
           ||||||||||||||||||||
Sbjct: 809 cccaaattcccaatccacag 828
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    caggatcatcgccatggcgc 125
              ||||||||||||||||||||
Sbjct: 857293 caggatcatcgccatggcgc 857274
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>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3
             Contains part of the RALGPS1A gene for Ral guanine
             nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351)
             and the ANGPTL2 gene for angiopoietin-like 2
             (angiopoietin-related protein 2)(ARP2, HARP), complete
             sequence
          Length = 145481

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    cccaaattcccaatccacag 41
             ||||||||||||||||||||
Sbjct: 74069 cccaaattcccaatccacag 74088
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>gb|AY742785.1| Nitrosospira sp. NRS527 3-phosphoglycerate kinase (cbbK) gene,
            complete cds
          Length = 1311

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 100  cggcaccaggatcatcgccatggc 123
            ||||||||||| ||||||||||||
Sbjct: 1110 cggcaccaggaccatcgccatggc 1133
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>gb|AY742784.1| Nitrosospira sp. GS832 3-phosphoglycerate kinase (cbbK) gene,
            complete cds
          Length = 1306

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 100  cggcaccaggatcatcgccatggc 123
            ||||||||||| ||||||||||||
Sbjct: 1105 cggcaccaggaccatcgccatggc 1128
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>gb|AF531102.1| Homo sapiens interleukin 1 receptor, type I (IL1R1) gene, complete cds
          Length = 27864

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    cccaaattcccaatccacag 41
             ||||||||||||||||||||
Sbjct: 18895 cccaaattcccaatccacag 18914
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      gatcggcaccaggatcatcg 116
               ||||||||||||||||||||
Sbjct: 4543763 gatcggcaccaggatcatcg 4543782
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 19       catcccaaattcccaatcca 38
                ||||||||||||||||||||
Sbjct: 16070580 catcccaaattcccaatcca 16070561
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>gb|AC087549.2|AC087549 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0039C14,
             complete sequence
          Length = 135098

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    catcccaaattcccaatcca 38
             ||||||||||||||||||||
Sbjct: 85685 catcccaaattcccaatcca 85666
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>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence
          Length = 179954

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     cccaaattcccaatccacag 41
              ||||||||||||||||||||
Sbjct: 124054 cccaaattcccaatccacag 124073
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>emb|AJ340794.1|HSA340794 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-DH8RS
          Length = 775

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 ggcgcagagggcgctggagc 140
           ||||||||||||||||||||
Sbjct: 504 ggcgcagagggcgctggagc 485
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 19       catcccaaattcccaatcca 38
                ||||||||||||||||||||
Sbjct: 16078821 catcccaaattcccaatcca 16078802
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>ref|NM_172491.1| Mus musculus RIKEN cDNA D130040H23 gene (D130040H23Rik), mRNA
          Length = 2003

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 gcgctggagctgaccctgt 149
           |||||||||||||||||||
Sbjct: 342 gcgctggagctgaccctgt 360
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>gb|AC117621.7| Mus musculus chromosome 8, clone RP23-114B10, complete sequence
          Length = 214933

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 131   gcgctggagctgaccctgt 149
             |||||||||||||||||||
Sbjct: 79930 gcgctggagctgaccctgt 79912
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>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome
          Length = 6397126

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 128     agggcgctggagctgaccc 146
               |||||||||||||||||||
Sbjct: 4545558 agggcgctggagctgaccc 4545540



 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 128     agggcgctggagctgaccc 146
               |||||||||||||||||||
Sbjct: 2263275 agggcgctggagctgaccc 2263293
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>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                              
Query: 113     atcgccatggcgcagagggcgctggagctga 143
               |||| ||||||| || |||||||||||||||
Sbjct: 2868612 atcggcatggcggagcgggcgctggagctga 2868642
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>gb|AC164559.3| Mus musculus BAC clone RP23-198H17 from chromosome 6, complete sequence
          Length = 194636

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 131   gcgctggagctgaccctgt 149
             |||||||||||||||||||
Sbjct: 17993 gcgctggagctgaccctgt 17975
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>emb|Z36773.1|TPNAPG T.pantotropha (LMD82.5) dctM, napA, napB, napC, napD, napE genes
          Length = 6040

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 97  gatcggcaccaggatcatc 115
           |||||||||||||||||||
Sbjct: 370 gatcggcaccaggatcatc 352
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>emb|BX936445.8| Zebrafish DNA sequence from clone DKEY-50O12 in linkage group 6,
            complete sequence
          Length = 163720

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 17   tacatcccaaattcccaat 35
            |||||||||||||||||||
Sbjct: 1138 tacatcccaaattcccaat 1120
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>ref|NM_001010963.1| Rattus norvegicus brain zinc finger protein (LOC362154), mRNA
          Length = 2036

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 128  agggcgctggagctgaccctgtt 150
            ||||||||| |||||||||||||
Sbjct: 1937 agggcgctgtagctgaccctgtt 1915
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 65      ccgcgcaagaaaccgcccg 83
               |||||||||||||||||||
Sbjct: 2631372 ccgcgcaagaaaccgcccg 2631354
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>emb|Y00548.1|RLNOD Rhizobium leguminosarum plasmid pRL1JI nodulation genes
          Length = 12055

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 97   gatcggcaccaggatcatc 115
            |||||||||||||||||||
Sbjct: 1921 gatcggcaccaggatcatc 1903
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>gb|AC162797.6| Mus musculus chromosome 8, clone RP23-293E17, complete sequence
          Length = 142444

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 131    gcgctggagctgaccctgt 149
              |||||||||||||||||||
Sbjct: 107048 gcgctggagctgaccctgt 107030
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 154     gggcaaggacctcaaggacgtga 176
               |||||||| ||||||||||||||
Sbjct: 4268752 gggcaaggtcctcaaggacgtga 4268730
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>gb|AE012324.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 232
           of 460 of the complete genome
          Length = 10265

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 108 ggatcatcgccatggcgca 126
           |||||||||||||||||||
Sbjct: 264 ggatcatcgccatggcgca 282
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>gb|AC161471.3| Gallus gallus BAC clone CH261-21B3 from chromosome ul, complete
             sequence
          Length = 205759

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 16    atacatcccaaattcccaa 34
             |||||||||||||||||||
Sbjct: 52728 atacatcccaaattcccaa 52710
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>gb|AC182430.2| Pan troglodytes BAC clone CH251-398I16 from chromosome 4, complete
             sequence
          Length = 145600

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 23    ccaaattcccaatccacag 41
             |||||||||||||||||||
Sbjct: 52909 ccaaattcccaatccacag 52927
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>dbj|AK138789.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430071F24 product:hypothetical protein,
           full insert sequence
          Length = 2564

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 gcgctggagctgaccctgt 149
           |||||||||||||||||||
Sbjct: 636 gcgctggagctgaccctgt 654
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>gb|AC171275.2| Gallus gallus BAC clone CH261-87A5 from chromosome ul, complete sequence
          Length = 206820

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     atacatcccaaattcccaa 34
              |||||||||||||||||||
Sbjct: 166070 atacatcccaaattcccaa 166052
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>gb|AC025467.5| Homo sapiens chromosome 5 clone CTD-2318K11, complete sequence
          Length = 114811

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 19    catcccaaattcccaatccacag 41
             |||||||||||||||| ||||||
Sbjct: 94731 catcccaaattcccaacccacag 94753
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>gb|AC025464.5| Homo sapiens chromosome 5 clone CTD-2260C5, complete sequence
          Length = 115265

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 19    catcccaaattcccaatccacag 41
             |||||||||||||||| ||||||
Sbjct: 10028 catcccaaattcccaacccacag 10050
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>gb|AC010608.7| Homo sapiens chromosome 5 clone CTB-3M24, complete sequence
          Length = 210408

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 19     catcccaaattcccaatccacag 41
              |||||||||||||||| ||||||
Sbjct: 168748 catcccaaattcccaacccacag 168726
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>dbj|AK084981.1| Mus musculus 13 days embryo lung cDNA, RIKEN full-length enriched
           library, clone:D430021F02 product:hypothetical protein,
           full insert sequence
          Length = 2241

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 gcgctggagctgaccctgt 149
           |||||||||||||||||||
Sbjct: 646 gcgctggagctgaccctgt 664
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>dbj|AK051365.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130040H23 product:similar to
           ZINC FINGER PROTEIN 126 (HZF-2) (FRAGMENT) [Homo
           sapiens], full insert sequence
          Length = 2003

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 131 gcgctggagctgaccctgt 149
           |||||||||||||||||||
Sbjct: 342 gcgctggagctgaccctgt 360
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 108     ggatcatcgccatggcgca 126
               |||||||||||||||||||
Sbjct: 2353558 ggatcatcgccatggcgca 2353540
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 19      catcccaaattcccaatcc 37
               |||||||||||||||||||
Sbjct: 8190015 catcccaaattcccaatcc 8190033
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 155      ggcaaggacctcaaggacg 173
                |||||||||||||||||||
Sbjct: 22435362 ggcaaggacctcaaggacg 22435380
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 19       catcccaaattcccaatcc 37
                |||||||||||||||||||
Sbjct: 23849659 catcccaaattcccaatcc 23849641
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>gb|AF291751.1|AF291751 Propionibacterium freudenreichii plasmid p545, complete sequence
          Length = 3555

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 124  gcagagggcgctggagctg 142
            |||||||||||||||||||
Sbjct: 2970 gcagagggcgctggagctg 2988
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>ref|XM_573470.1| PREDICTED: Rattus norvegicus similar to brain Zn-finger protein
            (LOC498247), mRNA
          Length = 1962

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 128  agggcgctggagctgaccctgtt 150
            ||||||||| |||||||||||||
Sbjct: 1891 agggcgctgtagctgaccctgtt 1869
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 128    agggcgctggagctgaccc 146
              |||||||||||||||||||
Sbjct: 817159 agggcgctggagctgaccc 817177
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>gb|AC141876.4| Mus musculus BAC clone RP24-289M9 from chromosome 6, complete sequence
          Length = 151702

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 131   gcgctggagctgaccctgt 149
             |||||||||||||||||||
Sbjct: 29268 gcgctggagctgaccctgt 29286
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>dbj|AP004213.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1111_H02
          Length = 108603

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    catcccaaattcccaatcc 37
             |||||||||||||||||||
Sbjct: 41363 catcccaaattcccaatcc 41345
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>dbj|AP005546.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1003_C09
          Length = 124746

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 155   ggcaaggacctcaaggacg 173
             |||||||||||||||||||
Sbjct: 71851 ggcaaggacctcaaggacg 71869
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>gb|AE005045.1| Halobacterium sp. NRC-1 section 76 of 170 of the complete genome
          Length = 10087

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 103  caccaggatcatcgccatg 121
            |||||||||||||||||||
Sbjct: 9464 caccaggatcatcgccatg 9446
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>emb|BX005335.9| Zebrafish DNA sequence from clone DKEY-240N8, complete sequence
          Length = 211094

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 17     tacatcccaaattcccaat 35
              |||||||||||||||||||
Sbjct: 191570 tacatcccaaattcccaat 191588
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>dbj|AK108778.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-A02, full
            insert sequence
          Length = 1503

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 155  ggcaaggacctcaaggacg 173
            |||||||||||||||||||
Sbjct: 1141 ggcaaggacctcaaggacg 1123
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>emb|AL133243.3|CNS01DUG BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 559D11 of
             library RPCI-11 from chromosome 2 of Homo sapiens (Human)
          Length = 166318

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    aatccacagccagatctct 51
             |||||||||||||||||||
Sbjct: 23728 aatccacagccagatctct 23710
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>gb|BC088438.1| Rattus norvegicus brain zinc finger protein, mRNA (cDNA clone
            MGC:95079 IMAGE:7126102), complete cds
          Length = 2036

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 128  agggcgctggagctgaccctgtt 150
            ||||||||| |||||||||||||
Sbjct: 1937 agggcgctgtagctgaccctgtt 1915
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 127    gagggcgctggagctgacc 145
              |||||||||||||||||||
Sbjct: 902021 gagggcgctggagctgacc 902039
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 157     caaggacctcaaggacgtg 175
               |||||||||||||||||||
Sbjct: 2484664 caaggacctcaaggacgtg 2484682
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 19      catcccaaattcccaatcc 37
               |||||||||||||||||||
Sbjct: 8189896 catcccaaattcccaatcc 8189914
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>emb|AL731750.3|CNS08C7Z Oryza sativa chromosome 12, . BAC OJ1055_H05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 113332

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 19    catcccaaattcccaatcc 37
             |||||||||||||||||||
Sbjct: 66060 catcccaaattcccaatcc 66078
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>gb|AC130211.3| Mus musculus BAC clone RP24-261D2 from 1, complete sequence
          Length = 182051

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 154    gggcaaggacctcaaggac 172
              |||||||||||||||||||
Sbjct: 134331 gggcaaggacctcaaggac 134313
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>emb|AL133168.6|CNS01DU7 Human chromosome 14 DNA sequence BAC R-187K17 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 195115

 Score = 38.2 bits (19), Expect = 8.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     ccaaattcccaatccacag 41
              |||||||||||||||||||
Sbjct: 153475 ccaaattcccaatccacag 153493


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,001,084
Number of Sequences: 3902068
Number of extensions: 1001084
Number of successful extensions: 67714
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66859
Number of HSP's gapped (non-prelim): 854
length of query: 177
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 155
effective length of database: 17,147,199,772
effective search space: 2657815964660
effective search space used: 2657815964660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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