ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet25g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 103 5e-19
2gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare str... 103 5e-19
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome... 103 5e-19
5dbj|AK100470.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 5e-19
6emb|Z99755.1|HS714B7 Human DNA sequence from clone CTA-714B7 on ... 40 5.7
7gb|AC146348.42| Pan troglodytes clone rp43-34i24, complete sequence 40 5.7
8gb|AC004822.1|AC004822 Homo sapiens PAC clone RP1-170D19 from Xq... 40 5.7
9gb|AC146300.4| Mus musculus BAC clone RP23-38L11 from 3, complet... 40 5.7 
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  103 bits (52), Expect = 5e-19
 Identities = 123/146 (84%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                            
Query: 179      tatggggttggtggcctgccaatgaagccggtgggaatggcacccgcgaccgcgtcacag 238
                ||||| ||||||||||  || |||||||||| ||| |||||  | ||| ||||| |||||
Sbjct: 12664815 tatggtgttggtggccgtccgatgaagccggcgggcatggcgtcggcggccgcggcacag 12664874

                                                                            
Query: 239      cccatg---gcgcagaagaaggatccgttcggctccatagatcccttcgcggcgaagcct 295
                || |||   | ||||||||||||||||||||| || ||||| |||||||| |||||||| 
Sbjct: 12664875 ccgatgatggggcagaagaaggatccgttcggttcaatagaccccttcgctgcgaagccc 12664934

                                          
Query: 296      gggtctatgaatgctgcaaagcaggc 321
                || |||||||||||||||||| ||||
Sbjct: 12664935 ggttctatgaatgctgcaaagaaggc 12664960



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 113      ttctcgatgggcggtttggcgagcacgctcccgaa 147
                ||||||||||||||  |||||||||||||||||||
Sbjct: 12664740 ttctcgatgggcggcatggcgagcacgctcccgaa 12664774



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 31       ccagcccaacgcgccgctcagatc 54
                ||||||||||||||||||||||||
Sbjct: 12664658 ccagcccaacgcgccgctcagatc 12664681
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>gb|AC131175.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0030D15, from chromosome 3, complete sequence
          Length = 151972

 Score =  103 bits (52), Expect = 5e-19
 Identities = 123/146 (84%), Gaps = 3/146 (2%)
 Strand = Plus / Minus

                                                                         
Query: 179   tatggggttggtggcctgccaatgaagccggtgggaatggcacccgcgaccgcgtcacag 238
             ||||| ||||||||||  || |||||||||| ||| |||||  | ||| ||||| |||||
Sbjct: 12174 tatggtgttggtggccgtccgatgaagccggcgggcatggcgtcggcggccgcggcacag 12115

                                                                         
Query: 239   cccatg---gcgcagaagaaggatccgttcggctccatagatcccttcgcggcgaagcct 295
             || |||   | ||||||||||||||||||||| || ||||| |||||||| |||||||| 
Sbjct: 12114 ccgatgatggggcagaagaaggatccgttcggttcaatagaccccttcgctgcgaagccc 12055

                                       
Query: 296   gggtctatgaatgctgcaaagcaggc 321
             || |||||||||||||||||| ||||
Sbjct: 12054 ggttctatgaatgctgcaaagaaggc 12029



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 113   ttctcgatgggcggtttggcgagcacgctcccgaa 147
             ||||||||||||||  |||||||||||||||||||
Sbjct: 12249 ttctcgatgggcggcatggcgagcacgctcccgaa 12215



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 31    ccagcccaacgcgccgctcagatc 54
             ||||||||||||||||||||||||
Sbjct: 12331 ccagcccaacgcgccgctcagatc 12308
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  103 bits (52), Expect = 5e-19
 Identities = 123/146 (84%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                            
Query: 179      tatggggttggtggcctgccaatgaagccggtgggaatggcacccgcgaccgcgtcacag 238
                ||||| ||||||||||  || |||||||||| ||| |||||  | ||| ||||| |||||
Sbjct: 12661578 tatggtgttggtggccgtccgatgaagccggcgggcatggcgtcggcggccgcggcacag 12661637

                                                                            
Query: 239      cccatg---gcgcagaagaaggatccgttcggctccatagatcccttcgcggcgaagcct 295
                || |||   | ||||||||||||||||||||| || ||||| |||||||| |||||||| 
Sbjct: 12661638 ccgatgatggggcagaagaaggatccgttcggttcaatagaccccttcgctgcgaagccc 12661697

                                          
Query: 296      gggtctatgaatgctgcaaagcaggc 321
                || |||||||||||||||||| ||||
Sbjct: 12661698 ggttctatgaatgctgcaaagaaggc 12661723



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 113      ttctcgatgggcggtttggcgagcacgctcccgaa 147
                ||||||||||||||  |||||||||||||||||||
Sbjct: 12661503 ttctcgatgggcggcatggcgagcacgctcccgaa 12661537



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                        
Query: 31       ccagcccaacgcgccgctcagatc 54
                ||||||||||||||||||||||||
Sbjct: 12661421 ccagcccaacgcgccgctcagatc 12661444
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>gb|AC121491.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0050D18, complete sequence
          Length = 126350

 Score =  103 bits (52), Expect = 5e-19
 Identities = 123/146 (84%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                         
Query: 179   tatggggttggtggcctgccaatgaagccggtgggaatggcacccgcgaccgcgtcacag 238
             ||||| ||||||||||  || |||||||||| ||| |||||  | ||| ||||| |||||
Sbjct: 19268 tatggtgttggtggccgtccgatgaagccggcgggcatggcgtcggcggccgcggcacag 19327

                                                                         
Query: 239   cccatg---gcgcagaagaaggatccgttcggctccatagatcccttcgcggcgaagcct 295
             || |||   | ||||||||||||||||||||| || ||||| |||||||| |||||||| 
Sbjct: 19328 ccgatgatggggcagaagaaggatccgttcggttcaatagaccccttcgctgcgaagccc 19387

                                       
Query: 296   gggtctatgaatgctgcaaagcaggc 321
             || |||||||||||||||||| ||||
Sbjct: 19388 ggttctatgaatgctgcaaagaaggc 19413



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 113   ttctcgatgggcggtttggcgagcacgctcccgaa 147
             ||||||||||||||  |||||||||||||||||||
Sbjct: 19193 ttctcgatgggcggcatggcgagcacgctcccgaa 19227



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 31    ccagcccaacgcgccgctcagatc 54
             ||||||||||||||||||||||||
Sbjct: 19111 ccagcccaacgcgccgctcagatc 19134
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>dbj|AK100470.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093E24, full
           insert sequence
          Length = 1833

 Score =  103 bits (52), Expect = 5e-19
 Identities = 123/146 (84%), Gaps = 3/146 (2%)
 Strand = Plus / Plus

                                                                       
Query: 179 tatggggttggtggcctgccaatgaagccggtgggaatggcacccgcgaccgcgtcacag 238
           ||||| ||||||||||  || |||||||||| ||| |||||  | ||| ||||| |||||
Sbjct: 718 tatggtgttggtggccgtccgatgaagccggcgggcatggcgtcggcggccgcggcacag 777

                                                                       
Query: 239 cccatg---gcgcagaagaaggatccgttcggctccatagatcccttcgcggcgaagcct 295
           || |||   | ||||||||||||||||||||| || ||||| |||||||| |||||||| 
Sbjct: 778 ccgatgatggggcagaagaaggatccgttcggttcaatagaccccttcgctgcgaagccc 837

                                     
Query: 296 gggtctatgaatgctgcaaagcaggc 321
           || |||||||||||||||||| ||||
Sbjct: 838 ggttctatgaatgctgcaaagaaggc 863



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                              
Query: 113 ttctcgatgggcggtttggcgagcacgctcccgaa 147
           ||||||||||||||  |||||||||||||||||||
Sbjct: 643 ttctcgatgggcggcatggcgagcacgctcccgaa 677



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 31  ccagcccaacgcgccgctcagatc 54
           ||||||||||||||||||||||||
Sbjct: 561 ccagcccaacgcgccgctcagatc 584
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>emb|Z99755.1|HS714B7 Human DNA sequence from clone CTA-714B7 on chromosome 22q12.2-13.2,
             complete sequence
          Length = 98274

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 305   aatgctgcaaagcaggcagg 324
             ||||||||||||||||||||
Sbjct: 16669 aatgctgcaaagcaggcagg 16650
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>gb|AC146348.42| Pan troglodytes clone rp43-34i24, complete sequence
          Length = 165558

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    aatgctgcaaagcaggcagg 324
              ||||||||||||||||||||
Sbjct: 157543 aatgctgcaaagcaggcagg 157524
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>gb|AC004822.1|AC004822 Homo sapiens PAC clone RP1-170D19 from Xq23, complete sequence
          Length = 127824

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ccaacagctcttccttctcg 118
             ||||||||||||||||||||
Sbjct: 81407 ccaacagctcttccttctcg 81426
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>gb|AC146300.4| Mus musculus BAC clone RP23-38L11 from 3, complete sequence
          Length = 261825

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    cttccttctcgatgggcggt 127
              ||||||||||||||||||||
Sbjct: 126002 cttccttctcgatgggcggt 125983


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,500,858
Number of Sequences: 3902068
Number of extensions: 2500858
Number of successful extensions: 43140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43100
Number of HSP's gapped (non-prelim): 40
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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