ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet25g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF279458.1|AF279458 Mus musculus Ran-binding protein 2 gene, complete cds Length = 57752 Score = 44.1 bits (22), Expect = 0.12 Identities = 31/34 (91%) Strand = Plus / Plus Query: 56 tgtcatggctcccggcaggctcggctccgcgctg 89 |||||||||||||||| | ||||||||| ||||| Sbjct: 8641 tgtcatggctcccggcggcctcggctccccgctg 8674
>gb|AC158593.8| Mus musculus 10 BAC RP23-197F5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216621 Score = 44.1 bits (22), Expect = 0.12 Identities = 31/34 (91%) Strand = Plus / Plus Query: 56 tgtcatggctcccggcaggctcggctccgcgctg 89 |||||||||||||||| | ||||||||| ||||| Sbjct: 21458 tgtcatggctcccggcggcctcggctccccgctg 21491
>gb|AC078930.13|AC078930 Mus musculus 10 BAC 280B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 226168 Score = 44.1 bits (22), Expect = 0.12 Identities = 31/34 (91%) Strand = Plus / Plus Query: 56 tgtcatggctcccggcaggctcggctccgcgctg 89 |||||||||||||||| | ||||||||| ||||| Sbjct: 24333 tgtcatggctcccggcggcctcggctccccgctg 24366
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 44.1 bits (22), Expect = 0.12 Identities = 22/22 (100%) Strand = Plus / Plus Query: 83 cgcgctgctcgccctgttggtc 104 |||||||||||||||||||||| Sbjct: 3782954 cgcgctgctcgccctgttggtc 3782975
>ref|NM_197598.1| Oryza sativa (japonica cultivar-group) putative chitinase (OSJNBb0015I11.16), mRNA Length = 891 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 709 cgcggccggcggcggtgtccg 689
>ref|NM_197596.1| Oryza sativa (japonica cultivar-group) chitinase (OSJNBb0015I11.14), mRNA Length = 924 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 613 cgcggccggcggcggtgtccg 593
>emb|AL939121.1|SCO939121 Streptomyces coelicolor A3(2) complete genome; segment 18/29 Length = 292100 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 gctcggctccgcgctgctcgc 94 ||||||||||||||||||||| Sbjct: 260943 gctcggctccgcgctgctcgc 260923
>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete sequence Length = 138824 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 104180 cgcggccggcggcggtgtccg 104160 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 89454 cgcggccggcggcggtgtccg 89434
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 ctggccgcgcggccggcggcg 131 ||||||||||||||||||||| Sbjct: 1537840 ctggccgcgcggccggcggcg 1537820
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 20702728 cgcggccggcggcggtgtccg 20702708 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 20688002 cgcggccggcggcggtgtccg 20687982
>dbj|AK070067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L15, full insert sequence Length = 1073 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 639 cgcggccggcggcggtgtccg 619
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 20714000 cgcggccggcggcggtgtccg 20713980 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtccg 138 ||||||||||||||||||||| Sbjct: 20699274 cgcggccggcggcggtgtccg 20699254
>dbj|D10654.1|STMAFSQ S.coelicolor afsQ1 and afsQ2 genes Length = 2966 Score = 42.1 bits (21), Expect = 0.48 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 gctcggctccgcgctgctcgc 94 ||||||||||||||||||||| Sbjct: 1833 gctcggctccgcgctgctcgc 1853
>ref|NM_007368.2| Homo sapiens RAS p21 protein activator 3 (RASA3), mRNA Length = 4220 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ctcggctccgcgctgctcgccctg 98 |||||||||| ||||||||||||| Sbjct: 2243 ctcggctccgggctgctcgccctg 2266
>ref|XM_869485.1| PREDICTED: Bos taurus similar to cytokine receptor-like factor 3 (LOC617260), mRNA Length = 702 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 113 ggccgcgcggccggcggcgg 132 |||||||||||||||||||| Sbjct: 419 ggccgcgcggccggcggcgg 400
>gb|BC038456.1| Homo sapiens RAS p21 protein activator 3, mRNA (cDNA clone MGC:46517 IMAGE:5240667), complete cds Length = 4220 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ctcggctccgcgctgctcgccctg 98 |||||||||| ||||||||||||| Sbjct: 2243 ctcggctccgggctgctcgccctg 2266
>gb|BC047242.1| Homo sapiens RAS p21 protein activator 3, mRNA (cDNA clone MGC:47588 IMAGE:6042834), complete cds Length = 4235 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ctcggctccgcgctgctcgccctg 98 |||||||||| ||||||||||||| Sbjct: 2234 ctcggctccgggctgctcgccctg 2257
>emb|AL161774.49| Human DNA sequence from clone RP11-245B11 on chromosome 13 Contains the 5' end of the gene for RAS p21 protein activator (GTPase activating protein) 3 (Ins(1,3,4,5)P4-binding protein) (GAP1IP4BP), a novel gene and 20 CpG islands, complete sequence Length = 162296 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ctcggctccgcgctgctcgccctg 98 |||||||||| ||||||||||||| Sbjct: 9628 ctcggctccgggctgctcgccctg 9605
>emb|X89399.1|HSINSP4BP Homo sapiens mRNA for Ins(1,3,4,5)P4-binding protein Length = 2837 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ctcggctccgcgctgctcgccctg 98 |||||||||| ||||||||||||| Sbjct: 2158 ctcggctccgggctgctcgccctg 2181
>dbj|AK128094.1| Homo sapiens cDNA FLJ46215 fis, clone TESTI4012646, highly similar to Ras GTPase-activating protein 3 Length = 4637 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ctcggctccgcgctgctcgccctg 98 |||||||||| ||||||||||||| Sbjct: 2681 ctcggctccgggctgctcgccctg 2704
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tcggctccgcgctgctcgcc 95 |||||||||||||||||||| Sbjct: 1497241 tcggctccgcgctgctcgcc 1497222
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 ggccgcgcggccggcggcgg 132 |||||||||||||||||||| Sbjct: 526337 ggccgcgcggccggcggcgg 526356 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 117 gcgcggccggcggcggtgtccgg 139 |||||||| |||||||||||||| Sbjct: 3811494 gcgcggcccgcggcggtgtccgg 3811472
>ref|XM_219270.3| PREDICTED: Rattus norvegicus Rab6 interacting protein 1 (predicted) (Rab6ip1_predicted), mRNA Length = 4928 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 ggctcggctccgcgctgctcgccc 96 ||||||||||||||| |||||||| Sbjct: 201 ggctcggctccgcgcggctcgccc 224
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ctcggctccgcgctgctcgccctg 98 |||||| ||||||||||||||||| Sbjct: 1692348 ctcggcgccgcgctgctcgccctg 1692325
>ref|NM_188756.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1833 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 1147 cgcggccggcggcggtgtc 1129
>ref|NM_188755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1854 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 1084 cgcggccggcggcggtgtc 1066
>gb|DQ215306.1| Taeniopygia guttata clone 0058P0010C04 beta-globin mRNA-like mRNA, complete sequence Length = 610 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 399 tggtcgtcgtcctggccgc 417
>gb|DQ215305.1| Taeniopygia guttata clone 0061P0012A06 beta-globin mRNA-like mRNA, complete sequence Length = 614 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 402 tggtcgtcgtcctggccgc 420
>gb|DQ215304.1| Taeniopygia guttata clone 0058P0010A03 beta-globin mRNA-like mRNA, complete sequence Length = 609 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 399 tggtcgtcgtcctggccgc 417
>gb|DQ215303.1| Taeniopygia guttata clone 0058P0017E01 beta-globin mRNA-like mRNA, complete sequence Length = 614 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 402 tggtcgtcgtcctggccgc 420
>gb|DQ215302.1| Taeniopygia guttata clone 0058P0014F03 beta-globin mRNA-like mRNA, complete sequence Length = 616 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 391 tggtcgtcgtcctggccgc 409
>gb|DQ215301.1| Taeniopygia guttata clone 0058P0010F05 beta-globin mRNA-like mRNA, complete sequence Length = 614 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 402 tggtcgtcgtcctggccgc 420
>gb|DQ215300.1| Taeniopygia guttata clone 0058P0011A03 beta-globin mRNA-like mRNA, complete sequence Length = 610 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 399 tggtcgtcgtcctggccgc 417
>gb|DQ215298.1| Taeniopygia guttata clone 0058P0016A08 beta-globin mRNA-like mRNA, complete sequence Length = 614 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 402 tggtcgtcgtcctggccgc 420
>gb|DQ215297.1| Taeniopygia guttata clone 0058P0009G07 beta-globin mRNA-like mRNA, complete sequence Length = 613 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 402 tggtcgtcgtcctggccgc 420
>gb|DQ215296.1| Taeniopygia guttata clone 0058P0014B08 beta-globin mRNA-like mRNA, complete sequence Length = 627 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 401 tggtcgtcgtcctggccgc 419
>gb|DQ215295.1| Taeniopygia guttata clone 0058P0030D10 beta-globin mRNA-like mRNA, complete sequence Length = 614 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 403 tggtcgtcgtcctggccgc 421
>gb|DQ215294.1| Taeniopygia guttata clone 0058P0009E07 beta-globin mRNA-like mRNA, complete sequence Length = 613 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 100 tggtcgtcgtcctggccgc 118 ||||||||||||||||||| Sbjct: 402 tggtcgtcgtcctggccgc 420
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 111 ctggccgcgcggccggcgg 129 ||||||||||||||||||| Sbjct: 1944447 ctggccgcgcggccggcgg 1944465
>gb|AC108761.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence Length = 153351 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 123 ccggcggcggtgtccggggcgtc 145 |||||| |||||||||||||||| Sbjct: 85027 ccggcgccggtgtccggggcgtc 85005
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 ggccgcgcggccggcggcg 131 ||||||||||||||||||| Sbjct: 3492716 ggccgcgcggccggcggcg 3492734
>ref|XM_607659.2| PREDICTED: Bos taurus similar to forkhead box F2 (LOC529218), partial mRNA Length = 1860 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 1089 gccgcgcggccggcggcgg 1071
>ref|XM_959073.1| Neurospora crassa OR74A hypothetical protein (NCU03073.1) partial mRNA Length = 1194 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 108 gtcctggccgcgcggccggcggcggtg 134 |||||||| |||| ||||||||||||| Sbjct: 746 gtcctggcagcgcagccggcggcggtg 772
>gb|AY380558.1| Burkholderia multivorans E243 type III secretion gene cluster, partial sequence Length = 26962 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 4830 gccgcgcggccggcggcgg 4812
>ref|XM_330508.1| Neurospora crassa OR74A hypothetical protein (NCU03073.1) partial mRNA Length = 1194 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 108 gtcctggccgcgcggccggcggcggtg 134 |||||||| |||| ||||||||||||| Sbjct: 746 gtcctggcagcgcagccggcggcggtg 772
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 1414124 gccgcgcggccggcggcgg 1414106
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 ggccgcgcggccggcggcg 131 ||||||||||||||||||| Sbjct: 528973 ggccgcgcggccggcggcg 528991
>ref|NM_010225.1| Mus musculus forkhead box F2 (Foxf2), mRNA Length = 2399 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 886 gccgcgcggccggcggcgg 868
>ref|NM_001452.1| Homo sapiens forkhead box F2 (FOXF2), mRNA Length = 2187 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 699 gccgcgcggccggcggcgg 681
>gb|AY532152.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4B-I13 splice variant (mco4) mRNA, complete cds, alternatively spliced Length = 1831 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 121 ggccggcggcggtgtccggggcg 143 |||||||||||||||||| |||| Sbjct: 1236 ggccggcggcggtgtccgtggcg 1214
>gb|AY532151.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4B-I5 splice variant (mco4) mRNA, complete cds, alternatively spliced Length = 1787 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 121 ggccggcggcggtgtccggggcg 143 |||||||||||||||||| |||| Sbjct: 1247 ggccggcggcggtgtccgtggcg 1225
>gb|AY532150.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4B (mco4) mRNA, complete cds Length = 1776 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 121 ggccggcggcggtgtccggggcg 143 |||||||||||||||||| |||| Sbjct: 1236 ggccggcggcggtgtccgtggcg 1214
>gb|AY532149.1| Phanerochaete chrysosporium strain BKM-1767 multicopper oxidase 4A (mco4) mRNA, complete cds Length = 1776 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 121 ggccggcggcggtgtccggggcg 143 |||||||||||||||||| |||| Sbjct: 1236 ggccggcggcggtgtccgtggcg 1214
>gb|AC007789.1| Oryza sativa BAC OSJNBa0049B20 genomic sequence, complete sequence Length = 182756 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 1966 cgcggccggcggcggtgtc 1984
>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12 Length = 299350 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 cgtcctggccgcgcggccg 125 ||||||||||||||||||| Sbjct: 263867 cgtcctggccgcgcggccg 263885
>gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, complete sequence Length = 218747 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 71 caggctcggctccgcgctgctcgccct 97 ||||||| |||| |||||||||||||| Sbjct: 207247 caggctctgctcggcgctgctcgccct 207221
>gb|AC133572.35| Medicago truncatula clone mth2-10o11, complete sequence Length = 108164 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 130 cggtgtccggggcgtcagc 148 ||||||||||||||||||| Sbjct: 36034 cggtgtccggggcgtcagc 36052
>gb|AC108724.4| Homo sapiens 3 BAC RP11-413E6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186773 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 tggctcccggcaggctcgg 79 ||||||||||||||||||| Sbjct: 95100 tggctcccggcaggctcgg 95082
>emb|AL034346.31|HS668J24 Human DNA sequence from clone RP4-668J24 on chromosome 6p25.1-25.3 Contians the FOXF2 gene for forkhead box F2, complete sequence Length = 120429 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 34010 gccgcgcggccggcggcgg 33992
>emb|Y11148.1|MMLUNGENE M.musculus mRNA for LUN protein, partial Length = 2084 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 556 gccgcgcggccggcggcgg 538
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 38.2 bits (19), Expect = 7.4 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 95 cctgttggtcgtcgtcctggccg-cgcggccggcg 128 |||||||| || ||||||||||| ||||||||||| Sbjct: 282889 cctgttggccgccgtcctggccgccgcggccggcg 282923
>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14 Length = 348014 Score = 38.2 bits (19), Expect = 7.4 Identities = 32/35 (91%), Gaps = 1/35 (2%) Strand = Plus / Plus Query: 95 cctgttggtcgtcgtcctggccg-cgcggccggcg 128 |||||||| || ||||||||||| ||||||||||| Sbjct: 194358 cctgttggccgccgtcctggccgccgcggccggcg 194392
>emb|BX572606.1| Rhodopseudomonas palustris CGA009 complete genome; segment 14/16 Length = 349841 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 ggccgcgcggccggcggcg 131 ||||||||||||||||||| Sbjct: 220634 ggccgcgcggccggcggcg 220652
>emb|BX572605.1| Rhodopseudomonas palustris CGA009 complete genome; segment 13/16 Length = 349746 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 cgcgcggccggcggcggtg 134 ||||||||||||||||||| Sbjct: 137127 cgcgcggccggcggcggtg 137145
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 cgcgcggccggcggcggtg 134 ||||||||||||||||||| Sbjct: 111222 cgcgcggccggcggcggtg 111240
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 2725097 gccgcgcggccggcggcgg 2725079
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 ggccgcgcggccggcggcg 131 ||||||||||||||||||| Sbjct: 337629 ggccgcgcggccggcggcg 337647
>gb|AC138773.5| Homo sapiens BAC clone RP11-1320L20 from UL, complete sequence Length = 191144 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 tggctcccggcaggctcgg 79 ||||||||||||||||||| Sbjct: 176587 tggctcccggcaggctcgg 176569
>emb|AL590625.16| Mouse DNA sequence from clone RP23-467M8 on chromosome 13 Contains the Foxf2 gene for forkhead box F2, a novel gene and two CpG islands, complete sequence Length = 165745 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 17744 gccgcgcggccggcggcgg 17726
>dbj|AP003074.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004G10 Length = 150379 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 34504 cgcggccggcggcggtgtc 34522 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 29845 cgcggccggcggcggtgtc 29863
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 3617634 cgcggccggcggcggtgtc 3617616
>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence Length = 127686 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 113 ggccgcgcggccggcggcg 131 ||||||||||||||||||| Sbjct: 43167 ggccgcgcggccggcggcg 43149
>gb|AE012124.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 32 of 460 of the complete genome Length = 11322 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 114 gccgcgcggccggcggcggtgtc 136 |||| |||||||||||||||||| Sbjct: 1058 gccgggcggccggcggcggtgtc 1080
>dbj|AK132385.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:4022445M22 product:forkhead box F2, full insert sequence Length = 2361 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 850 gccgcgcggccggcggcgg 832
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 114 gccgcgcggccggcggcggtgtc 136 |||| |||||||||||||||||| Sbjct: 344084 gccgggcggccggcggcggtgtc 344106
>gb|AF533985.1| Streptomyces sp. EN27 plasmid pEN2701, complete sequence Length = 12855 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 tccgcgctgctcgccctgt 99 ||||||||||||||||||| Sbjct: 12393 tccgcgctgctcgccctgt 12375
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 8037853 cgcggccggcggcggtgtc 8037871 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 8033194 cgcggccggcggcggtgtc 8033212
>gb|AC154840.2| Mus musculus BAC clone RP23-61I7 from chromosome 14, complete sequence Length = 195596 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Plus Query: 71 caggctcggctccgcgctgctcgccct 97 ||||||| |||| |||||||||||||| Sbjct: 105345 caggctctgctcggcgctgctcgccct 105371
>dbj|AP003196.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1008C01 Length = 144141 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 118 cgcggccggcggcggtgtc 136 ||||||||||||||||||| Sbjct: 139506 cgcggccggcggcggtgtc 139524
>gb|AE004989.1| Halobacterium sp. NRC-1 section 20 of 170 of the complete genome Length = 14108 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 127 cggcggtgtccggggcgtcagcg 149 |||||||||||| |||||||||| Sbjct: 2503 cggcggtgtccgcggcgtcagcg 2481
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 124 cggcggcggtgtccggggc 142 ||||||||||||||||||| Sbjct: 531373 cggcggcggtgtccggggc 531355
>emb|AL592170.21| Human DNA sequence from clone RP11-298A19 on chromosome 22, complete sequence Length = 186861 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 61 tggctcccggcaggctcgg 79 ||||||||||||||||||| Sbjct: 95171 tggctcccggcaggctcgg 95153
>gb|AF084938.1|HSFREAC1 Homo sapiens forkhead transcription factor (FREAC2) gene, exon 1 Length = 3582 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 2696 gccgcgcggccggcggcgg 2678
>emb|Y12293.1|MMY12293 Mus musculus lun gene, exon 1 (and joined CDS) Length = 2003 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 1197 gccgcgcggccggcggcgg 1179
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 1394084 gccgcgcggccggcggcgg 1394102
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 113 ggccgcgcggccggcggcg 131 ||||||||||||||||||| Sbjct: 1180194 ggccgcgcggccggcggcg 1180212
>gb|U13220.1|HSU13220 Homo sapiens forkhead protein FREAC-2 mRNA, complete cds Length = 2187 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 114 gccgcgcggccggcggcgg 132 ||||||||||||||||||| Sbjct: 699 gccgcgcggccggcggcgg 681
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 actctcctgtcatggctcc 67 ||||||||||||||||||| Sbjct: 4466407 actctcctgtcatggctcc 4466389
>emb|Y11874.1|MMY11874 M.musculus uPA gene, promoter sequence Length = 8235 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 71 caggctcggctccgcgctgctcgccct 97 ||||||| |||| |||||||||||||| Sbjct: 8233 caggctctgctcggcgctgctcgccct 8207
>gb|M17922.1|MUSUPAA Mouse Murine urokinase-type plasminogen activator protein gene, complete cds Length = 9950 Score = 38.2 bits (19), Expect = 7.4 Identities = 25/27 (92%) Strand = Plus / Minus Query: 71 caggctcggctccgcgctgctcgccct 97 ||||||| |||| |||||||||||||| Sbjct: 2180 caggctctgctcggcgctgctcgccct 2154 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 795,990 Number of Sequences: 3902068 Number of extensions: 795990 Number of successful extensions: 69361 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 65135 Number of HSP's gapped (non-prelim): 4230 length of query: 155 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 133 effective length of database: 17,147,199,772 effective search space: 2280577569676 effective search space used: 2280577569676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
