| Clone Name | baet25g02 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY104589.1| Zea mays PCO067801 mRNA sequence Length = 1197 Score = 404 bits (204), Expect = e-109 Identities = 359/408 (87%), Gaps = 2/408 (0%) Strand = Plus / Plus Query: 47 gagagcgagatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgg 106 ||||| |||||||| |||| | ||||||||||||| || || ||| |||| ||| |||| Sbjct: 126 gagagagagatggcatcggtggcggagatgcagcccctcgcgccggcggggtaccgccgc 185 Query: 107 gcgccggagatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggg 166 ||||||||||||||||||||||||||||| ||| | | ||||||||||| |||| |||| Sbjct: 186 gcgccggagatgaaggagaaggtggaggcgtcggtggtggacctggaggccgggaccggg 245 Query: 167 gagacgctctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgc 226 |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct: 246 gagacgctgtacccggggatctcgcgcggggagagcgccctccgatggggcttcgtccgc 305 Query: 227 aaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaacc 286 |||||||||||||||||| |||||||||||||||||||||| |||||||||| | ||| Sbjct: 306 aaggtctacggcatcctcgctgcgcagctgctcctcaccaccgccgtctccgccctcacc 365 Query: 287 gtcttccaccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctc 346 || ||||||||||||||||||||||||||||| |||| || | ||| |||||||||||| Sbjct: 366 gttctccaccccaccctcaacgccacgctctccgactccccgggcctcgcgctcgtgctc 425 Query: 347 gctgtcctccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgca 405 || ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||| || Sbjct: 426 gccgtcctgcccttcatcctgatgatcccattgtatcat-tatcagcacaagcacccaca 484 Query: 406 caatcttgctatcttgggtttgttcactctgtgcttgagcttcagcat 453 |||| | | | || ||||| ||||||| ||||||||||||||||||| Sbjct: 485 caatttcgttttcctgggtctgttcacgttgtgcttgagcttcagcat 532
>gb|BT016325.1| Zea mays clone Contig158 mRNA sequence Length = 1172 Score = 389 bits (196), Expect = e-105 Identities = 357/408 (87%), Gaps = 2/408 (0%) Strand = Plus / Plus Query: 47 gagagcgagatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgg 106 ||||| |||||||| |||| | ||||||||||||| || || || ||||| ||| |||| Sbjct: 80 gagagagagatggcatcggtggcggagatgcagcccctcgcgccctcggggtaccgccgc 139 Query: 107 gcgccggagatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggg 166 ||||||||||||||||||||||||||||| ||| | | ||||||||||| || | |||| Sbjct: 140 gcgccggagatgaaggagaaggtggaggcgtcggtggtggacctggaggccggcaccggg 199 Query: 167 gagacgctctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgc 226 |||||||| ||||||||||||||||||||||||| ||||||||| ||||||||| ||||| Sbjct: 200 gagacgctgtacccggggatctcgcgcggggagagcgccctccgatggggcttcgtccgc 259 Query: 227 aaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaacc 286 ||||||||||||| |||| |||||||||||||||||||||| |||||||||| | ||| Sbjct: 260 aaggtctacggcaccctcgctgcgcagctgctcctcaccaccgccgtctccgccctcacc 319 Query: 287 gtcttccaccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctc 346 || ||||||||||||||||||||||||||||| |||| || | ||| |||||||||||| Sbjct: 320 gttctccaccccaccctcaacgccacgctctccgactccccgggcctcgcgctcgtgctc 379 Query: 347 gctgtcctccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgca 405 || ||||| |||||||||||||||||||||||||| ||| |||||||||| |||||| || Sbjct: 380 gccgtcctgcccttcatcctgatgatcccattgtatcat-tatcagcacaagcacccaca 438 Query: 406 caatcttgctatcttgggtttgttcactctgtgcttgagcttcagcat 453 |||| | | | || ||||| ||||||| ||||||||||||||||||| Sbjct: 439 caatttcgttttcctgggtctgttcacgttgtgcttgagcttcagcat 486
>dbj|AK070043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039E14, full insert sequence Length = 1106 Score = 359 bits (181), Expect = 5e-96 Identities = 345/397 (86%), Gaps = 2/397 (0%) Strand = Plus / Plus Query: 55 gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114 ||||||||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||| Sbjct: 81 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 140 Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174 |||||||||||||||||| ||||| || | ||||||||||| || | |||||||||||| Sbjct: 141 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 200 Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234 ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct: 201 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 260 Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294 |||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||| Sbjct: 261 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 320 Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354 ||||||||||||||||||||||||| ||| || ||| || ||||||||||| ||||| Sbjct: 321 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 380 Query: 355 ccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgcacaatcttg 413 ||||||| |||||||| |||||||||| ||| |||||||||| ||||| ||||| ||| Sbjct: 381 ccccttcgtcctgatggtcccattgtatcat-tatcagcacaaacacccacacaactttg 439 Query: 414 ctatcttgggtttgttcactctgtgcttgagcttcag 450 | | ||||| ||||||| |||||||||| ||||| Sbjct: 440 tttacctgggtctgttcacgttgtgcttgagtttcag 476
>dbj|AK104366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D07, full insert sequence Length = 1060 Score = 351 bits (177), Expect = 1e-93 Identities = 344/397 (86%), Gaps = 2/397 (0%) Strand = Plus / Plus Query: 55 gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114 ||||||||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||| Sbjct: 80 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 139 Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174 ||||||||||||||||| ||||| || | ||||||||||| || | |||||||||||| Sbjct: 140 gatgaaggagaaggtgggcgcctccgcggtggacctggaggccggcaccggggagacgct 199 Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234 ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct: 200 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 259 Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294 |||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||| Sbjct: 260 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 319 Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354 ||||||||||||||||||||||||| ||| || ||| || ||||||||||| ||||| Sbjct: 320 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 379 Query: 355 ccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgcacaatcttg 413 ||||||| |||||||| |||||||||| ||| |||||||||| ||||| ||||| ||| Sbjct: 380 ccccttcgtcctgatggtcccattgtatcat-tatcagcacaaacacccacacaactttg 438 Query: 414 ctatcttgggtttgttcactctgtgcttgagcttcag 450 | | ||||| ||||||| |||||||||| ||||| Sbjct: 439 tttacctgggtctgttcacgttgtgcttgagtttcag 475
>dbj|AK104199.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A08, full insert sequence Length = 1060 Score = 351 bits (177), Expect = 1e-93 Identities = 344/397 (86%), Gaps = 2/397 (0%) Strand = Plus / Plus Query: 55 gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114 ||||||||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||| Sbjct: 80 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 139 Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174 ||||||||||||||||| ||||| || | ||||||||||| || | |||||||||||| Sbjct: 140 gatgaaggagaaggtgggcgcctccgcggtggacctggaggccggcaccggggagacgct 199 Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234 ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct: 200 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 259 Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294 |||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||| Sbjct: 260 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 319 Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354 ||||||||||||||||||||||||| ||| || ||| || ||||||||||| ||||| Sbjct: 320 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 379 Query: 355 ccccttcatcctgatgatcccattgta-catctatcagcacaggcacccgcacaatcttg 413 ||||||| |||||||| |||||||||| ||| |||||||||| ||||| ||||| ||| Sbjct: 380 ccccttcgtcctgatggtcccattgtatcat-tatcagcacaaacacccacacaactttg 438 Query: 414 ctatcttgggtttgttcactctgtgcttgagcttcag 450 | | ||||| ||||||| |||||||||| ||||| Sbjct: 439 tttacctgggtctgttcacgttgtgcttgagtttcag 475
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 331 bits (167), Expect = 1e-87 Identities = 272/307 (88%) Strand = Plus / Minus Query: 55 gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114 ||||||||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||| Sbjct: 149745 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 149686 Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174 |||||||||||||||||| ||||| || | ||||||||||| || | |||||||||||| Sbjct: 149685 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 149626 Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234 ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct: 149625 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 149566 Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294 |||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||| Sbjct: 149565 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 149506 Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354 ||||||||||||||||||||||||| ||| || ||| || ||||||||||| ||||| Sbjct: 149505 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 149446 Query: 355 ccccttc 361 ||||||| Sbjct: 149445 ccccttc 149439
>gb|AC120991.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0006J12, complete sequence Length = 157069 Score = 331 bits (167), Expect = 1e-87 Identities = 272/307 (88%) Strand = Plus / Minus Query: 55 gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114 ||||||||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||| Sbjct: 47108 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 47049 Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174 |||||||||||||||||| ||||| || | ||||||||||| || | |||||||||||| Sbjct: 47048 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 46989 Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234 ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct: 46988 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 46929 Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294 |||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||| Sbjct: 46928 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 46869 Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354 ||||||||||||||||||||||||| ||| || ||| || ||||||||||| ||||| Sbjct: 46868 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 46809 Query: 355 ccccttc 361 ||||||| Sbjct: 46808 ccccttc 46802
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 331 bits (167), Expect = 1e-87 Identities = 272/307 (88%) Strand = Plus / Minus Query: 55 gatggcgtcggcgacggagatgcagccactggcaccgtcgggctacagccgggcgccgga 114 ||||||||||||| ||||||||||||| ||||| ||| |||||||| ||||||||||||| Sbjct: 19446396 gatggcgtcggcggcggagatgcagccgctggccccggcgggctaccgccgggcgccgga 19446337 Query: 115 gatgaaggagaaggtggaggcctcgtcgatcgacctggaggcggggaacggggagacgct 174 |||||||||||||||||| ||||| || | ||||||||||| || | |||||||||||| Sbjct: 19446336 gatgaaggagaaggtggacgcctccgcggtggacctggaggccggcaccggggagacgct 19446277 Query: 175 ctacccggggatctcgcgcggggagaacgccctccgctggggcttcatccgcaaggtcta 234 ||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||| || Sbjct: 19446276 gtacccggggatctcgcgcggggagagcgccctccggtgggggttcgtccgcaaggtgta 19446217 Query: 235 cggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccgccgtaaccgtcttcca 294 |||||||||| ||||||||||||||||||||||| ||||||||| | |||||| |||| Sbjct: 19446216 cggcatcctcgccgcgcagctgctcctcaccaccgccgtctccgcgctcaccgtcctcca 19446157 Query: 295 ccccaccctcaacgccacgctctccaactcgcccgtcctggcgctcgtgctcgctgtcct 354 ||||||||||||||||||||||||| ||| || ||| || ||||||||||| ||||| Sbjct: 19446156 ccccaccctcaacgccacgctctcctcctccccgaccctcgccctcgtgctcgccgtcct 19446097 Query: 355 ccccttc 361 ||||||| Sbjct: 19446096 ccccttc 19446090
>gb|AY105221.1| Zea mays PCO086679 mRNA sequence Length = 1138 Score = 50.1 bits (25), Expect = 0.006 Identities = 52/61 (85%) Strand = Plus / Plus Query: 219 tcatccgcaaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtcgtctccg 278 ||||||||||| |||||| ||| |||| | ||||||||||||||| |||||||| ||| Sbjct: 307 tcatccgcaagatctacgtcattctctccctccagctgctcctcaccgccgtcgtcgccg 366 Query: 279 c 279 | Sbjct: 367 c 367
>ref|XM_653645.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN1133.2), mRNA Length = 813 Score = 44.1 bits (22), Expect = 0.39 Identities = 46/54 (85%) Strand = Plus / Plus Query: 218 ttcatccgcaaggtctacggcatcctctgcgcgcagctgctcctcaccaccgtc 271 ||||||||||||||||| | |||||| || ||||||||||| ||||||||| Sbjct: 193 ttcatccgcaaggtctatgcgatcctcaccgtccagctgctcctaaccaccgtc 246
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 260 ctcaccaccgtcgtctccgccg 281 |||||||||||||||||||||| Sbjct: 1878944 ctcaccaccgtcgtctccgccg 1878965
>gb|AC092193.4| Bos taurus clone RP42-459A17, complete sequence Length = 258544 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 tgaaggagaaggtggaggcct 137 ||||||||||||||||||||| Sbjct: 200699 tgaaggagaaggtggaggcct 200719
>ref|XM_470337.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1614 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 gccggagatgaaggagaaggt 129 ||||||||||||||||||||| Sbjct: 153 gccggagatgaaggagaaggt 133
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 gccggagatgaaggagaaggt 129 ||||||||||||||||||||| Sbjct: 34827916 gccggagatgaaggagaaggt 34827896
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 109 gccggagatgaaggagaaggt 129 ||||||||||||||||||||| Sbjct: 34734 gccggagatgaaggagaaggt 34754
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 109 gccggagatgaaggagaaggt 129 ||||||||||||||||||||| Sbjct: 34917988 gccggagatgaaggagaaggt 34917968
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 285 ccgtcttccaccccaccctcaacgccac 312 ||||||||||||||||| ||| |||||| Sbjct: 2307 ccgtcttccaccccaccatcaccgccac 2334
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gaaatccccaattccccaca 30 |||||||||||||||||||| Sbjct: 97739 gaaatccccaattccccaca 97758
>gb|BC059558.1| Danio rerio chaperonin containing TCP1, subunit 2 (beta), mRNA (cDNA clone MGC:73212 IMAGE:4790853), complete cds Length = 1784 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 846 agatgaaggagaaggtggag 865
>gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosome 17, complete sequence Length = 178774 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tgtgcttgagcttcagcatt 454 |||||||||||||||||||| Sbjct: 139970 tgtgcttgagcttcagcatt 139951
>ref|XM_756273.1| Ustilago maydis 521 hypothetical protein (UM05219.1) partial mRNA Length = 1830 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 gagcgagatggcgtcggcga 68 |||||||||||||||||||| Sbjct: 1432 gagcgagatggcgtcggcga 1451
>gb|AC122384.3| Mus musculus BAC clone RP24-63P8 from chromosome 17, complete sequence Length = 190880 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 tgtgcttgagcttcagcatt 454 |||||||||||||||||||| Sbjct: 33762 tgtgcttgagcttcagcatt 33743
>emb|CR728712.2|CNS0GP7Y Tetraodon nigroviridis full-length cDNA Length = 1133 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 73 agatgaaggagaaggtggag 92
>emb|CR724120.2|CNS0GLOE Tetraodon nigroviridis full-length cDNA Length = 1127 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 74 agatgaaggagaaggtggag 93
>emb|CR722961.2|CNS0GKS7 Tetraodon nigroviridis full-length cDNA Length = 1275 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 223 agatgaaggagaaggtggag 242
>emb|CR702614.2|CNS0G536 Tetraodon nigroviridis full-length cDNA Length = 1873 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 830 agatgaaggagaaggtggag 849
>emb|CR683137.2|CNS0FQ25 Tetraodon nigroviridis full-length cDNA Length = 1341 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 297 agatgaaggagaaggtggag 316
>emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chromosome 9 Contains a pseudogene similar to part of nucleolar protein 5A (56kDa with KKE/D repeat) (NOL5A) (NOP56), the ELAVL2 gene for ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B) (HUB, HELN1), two novel genes, the 5' end of a novel gene and a CpG island, complete sequence Length = 183483 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ctgatgatcccattgtacat 384 |||||||||||||||||||| Sbjct: 33491 ctgatgatcccattgtacat 33510
>emb|AL445623.2|HS315I14 Homo sapiens chromosome 9 BAC RP11-315I14, complete sequence Length = 198637 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ctgatgatcccattgtacat 384 |||||||||||||||||||| Sbjct: 159083 ctgatgatcccattgtacat 159102
>gb|AF506226.1| Danio rerio chaperonin-containing TCP-1 complex beta chain (cct2) mRNA, partial cds Length = 1554 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 852 agatgaaggagaaggtggag 871
>gb|BC050953.1| Danio rerio, clone IMAGE:5776777, mRNA Length = 1835 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 897 agatgaaggagaaggtggag 916
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gaaatccccaattccccaca 30 |||||||||||||||||||| Sbjct: 23081736 gaaatccccaattccccaca 23081755
>ref|NM_201455.1| Danio rerio chaperonin containing TCP1, subunit 2 (beta) (cct2), mRNA Length = 1784 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 agatgaaggagaaggtggag 133 |||||||||||||||||||| Sbjct: 846 agatgaaggagaaggtggag 865
>emb|AJ337232.1|HSA337232 Homo sapiens genomic sequence surrounding NotI site, clone NR5-FN12RS Length = 816 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 cgccctccgctggggcttca 221 |||||||||||||||||||| Sbjct: 155 cgccctccgctggggcttca 136
>gb|U33117.1|TAU33117 Thermus aquaticus MutS gene, complete cds Length = 3396 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gccggagatgaaggagaagg 128 |||||||||||||||||||| Sbjct: 1943 gccggagatgaaggagaagg 1962
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 gaaatccccaattccccaca 30 |||||||||||||||||||| Sbjct: 23391646 gaaatccccaattccccaca 23391665
>gb|AC099701.4| Mus musculus chromosome 7, clone RP23-184F6, complete sequence Length = 226167 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 gatgaaggagaaggtggagg 134 |||||||||||||||||||| Sbjct: 124282 gatgaaggagaaggtggagg 124263
>emb|AL672174.8| Mouse DNA sequence from clone RP23-408K4 on chromosome X, complete sequence Length = 201642 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 128 gtggaggcctcgtcgatcgacctggaggcggg 159 ||||||||||||| | ||| |||||||||||| Sbjct: 187821 gtggaggcctcgtgggtcgtcctggaggcggg 187790 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,160,751 Number of Sequences: 3902068 Number of extensions: 3160751 Number of successful extensions: 70332 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 69958 Number of HSP's gapped (non-prelim): 366 length of query: 454 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 432 effective length of database: 17,147,199,772 effective search space: 7407590301504 effective search space used: 7407590301504 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)