ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet25e05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK059989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 119 8e-24
3gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome... 119 8e-24
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
6dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
7dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.094
8ref|XM_418732.1| PREDICTED: Gallus gallus similar to juxtaposed ... 44 0.37
9ref|NM_181005.2| Bos taurus chromogranin A (parathyroid secretor... 42 1.5
10gb|L81176.2|PSEFLAOP Pseudomonas aeruginosa flagellin (fliC) gen... 42 1.5
11gb|S79268.1|S79256S7 chromogranin A [cattle, Genomic, 535 nt, se... 42 1.5
12dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
13dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
14gb|AF139825.1|AF139825 Pseudomonas aeruginosa strain PA103 flage... 42 1.5
15gb|AF139824.1|AF139824 Pseudomonas aeruginosa strain PAK flagell... 42 1.5
16gb|AF139823.1|AF139823 Pseudomonas aeruginosa strain cs2 flagell... 42 1.5
17gb|AF139822.1|AF139822 Pseudomonas aeruginosa strain cs32 flagel... 42 1.5
18dbj|AK100741.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
19dbj|AK100456.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
20gb|U73523.1|BTU73523 Bos taurus chromogranin A mRNA, complete cds 42 1.5
21emb|X04298.1|BTCHROMA Bovine mRNA for chromogranin A 42 1.5
22gb|M16971.1|BOVSPI Bovine pituitary secretory protein I (SP-I) m... 42 1.5
23gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.8
24gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 5.8
25ref|XM_465851.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
26gb|AY770836.1| Salix burjatica microsatellite SB880 sequence 40 5.8
27ref|XM_504412.1| Yarrowia lipolytica CLIB122, YALI0E26125g predi... 40 5.8
28emb|CR936324.2| Medicago truncatula chromosome 5 clone mth2-62a2... 40 5.8
29ref|NM_176751.1| Drosophila melanogaster CG8557-RB, transcript v... 40 5.8
30dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005 40 5.8
31ref|NM_132990.2| Drosophila melanogaster CG8557-RA, transcript v... 40 5.8
32gb|AY069788.1| Drosophila melanogaster SD02996 full length cDNA 40 5.8
33gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, re... 40 5.8
34gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, re... 40 5.8
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
36dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete... 40 5.8
37gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.8
38gb|AC138127.1| Homo sapiens chromosome 19 clone LLNLR-281G7, com... 40 5.8
39emb|AJ538842.1|NTA538842 Nicotiana tabacum cDNA-AFLP-fragment BT... 40 5.8
40dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
41dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
42dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
43dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
44gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 ... 40 5.8
45gb|AC005263.1|AC005263 Homo sapiens chromosome 19, cosmid F20489... 40 5.8
46emb|CR962121.2| Medicago truncatula chromosome 5 clone mte1-77f5... 40 5.8
47emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 5.8 
>dbj|AK059989.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A08, full
           insert sequence
          Length = 923

 Score =  218 bits (110), Expect = 1e-53
 Identities = 185/210 (88%)
 Strand = Plus / Plus

                                                                       
Query: 223 aaccgcgagctcaaggccggcctccatcctctcaggcgcaagctcgtgctctggtacaca 282
           ||||||||||||||||||||| ||||||| || ||||| |   ||||||| |||||||| 
Sbjct: 205 aaccgcgagctcaaggccggcttccatccccttaggcgtagattcgtgctatggtacacg 264

                                                                       
Query: 283 cgccggacgcccgggacgaggtcgcagtcgtacgaggacaacatcaagaagatcgtcgat 342
           |||||||| || ||| ||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 265 cgccggactcctggggcgaggtcgcagtcctacgaggacaacatcaagaagatcgtcgac 324

                                                                       
Query: 343 ttcagcactgtcgagtcgttctgggtttgctactgccacctcgcacgcccgtccgcccta 402
           ||||||||||| |||||||||||||||||||||||||||||| | || |||     ||| 
Sbjct: 325 ttcagcactgttgagtcgttctgggtttgctactgccacctcacgcggccggttagcctg 384

                                         
Query: 403 ccgagccccacggacctgcatcttttcaag 432
           ||||||||||| ||||||||||||||||||
Sbjct: 385 ccgagccccaccgacctgcatcttttcaag 414



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                       
Query: 54  cccagccgaccaaatcgccgcacgagggggcgccatggaggcggcggtggagaggaaggt 113
           |||||| |||||||||||||||  |||| ||||||||||| |||||| ||||| || || 
Sbjct: 51  cccagcggaccaaatcgccgcagcagggcgcgccatggagccggcggcggagaagaggga 110

                            
Query: 114 gcccgagcaggaggagc 130
           | |||||||||||||||
Sbjct: 111 ggccgagcaggaggagc 127
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                           
Query: 266     tcgtgctctggtacacacgccggacgcccgggacgaggtcgcagtcgtacgaggacaaca 325
               ||||||| |||||||| |||||||| || ||| ||||||||||||| |||||||||||||
Sbjct: 8572464 tcgtgctatggtacacgcgccggactcctggggcgaggtcgcagtcctacgaggacaaca 8572405

                                           
Query: 326     tcaagaagatcgtcgatttcagcactgt 353
               |||||||||||||||| |||||||||||
Sbjct: 8572404 tcaagaagatcgtcgacttcagcactgt 8572377



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                           
Query: 355     gagtcgttctgggtttgctactgccacctcgcacgcccgtccgccctaccgagccccacg 414
               |||||||||||||||||||||||||||||| | || |||     ||| ||||||||||| 
Sbjct: 8572284 gagtcgttctgggtttgctactgccacctcacgcggccggttagcctgccgagccccacc 8572225

                                 
Query: 415     gacctgcatcttttcaag 432
               ||||||||||||||||||
Sbjct: 8572224 gacctgcatcttttcaag 8572207



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                           
Query: 54      cccagccgaccaaatcgccgcacgagggggcgccatggaggcggcggtggagaggaaggt 113
               |||||| |||||||||||||||  |||| ||||||||||| |||||| ||||| || || 
Sbjct: 8572818 cccagcggaccaaatcgccgcagcagggcgcgccatggagccggcggcggagaagaggga 8572759

                                
Query: 114     gcccgagcaggaggagc 130
               | |||||||||||||||
Sbjct: 8572758 ggccgagcaggaggagc 8572742



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 223     aaccgcgagctcaaggccggcctccatcc 251
               ||||||||||||||||||||| |||||||
Sbjct: 8572664 aaccgcgagctcaaggccggcttccatcc 8572636
to top
>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02,
             complete sequence
          Length = 137327

 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 266   tcgtgctctggtacacacgccggacgcccgggacgaggtcgcagtcgtacgaggacaaca 325
             ||||||| |||||||| |||||||| || ||| ||||||||||||| |||||||||||||
Sbjct: 53436 tcgtgctatggtacacgcgccggactcctggggcgaggtcgcagtcctacgaggacaaca 53377

                                         
Query: 326   tcaagaagatcgtcgatttcagcactgt 353
             |||||||||||||||| |||||||||||
Sbjct: 53376 tcaagaagatcgtcgacttcagcactgt 53349



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                         
Query: 355   gagtcgttctgggtttgctactgccacctcgcacgcccgtccgccctaccgagccccacg 414
             |||||||||||||||||||||||||||||| | || |||     ||| ||||||||||| 
Sbjct: 53256 gagtcgttctgggtttgctactgccacctcacgcggccggttagcctgccgagccccacc 53197

                               
Query: 415   gacctgcatcttttcaag 432
             ||||||||||||||||||
Sbjct: 53196 gacctgcatcttttcaag 53179



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                         
Query: 54    cccagccgaccaaatcgccgcacgagggggcgccatggaggcggcggtggagaggaaggt 113
             |||||| |||||||||||||||  |||| ||||||||||| |||||| ||||| || || 
Sbjct: 53790 cccagcggaccaaatcgccgcagcagggcgcgccatggagccggcggcggagaagaggga 53731

                              
Query: 114   gcccgagcaggaggagc 130
             | |||||||||||||||
Sbjct: 53730 ggccgagcaggaggagc 53714



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 223   aaccgcgagctcaaggccggcctccatcc 251
             ||||||||||||||||||||| |||||||
Sbjct: 53636 aaccgcgagctcaaggccggcttccatcc 53608
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                           
Query: 266     tcgtgctctggtacacacgccggacgcccgggacgaggtcgcagtcgtacgaggacaaca 325
               ||||||| |||||||| |||||||| || ||| ||||||||||||| |||||||||||||
Sbjct: 8570299 tcgtgctatggtacacgcgccggactcctggggcgaggtcgcagtcctacgaggacaaca 8570240

                                           
Query: 326     tcaagaagatcgtcgatttcagcactgt 353
               |||||||||||||||| |||||||||||
Sbjct: 8570239 tcaagaagatcgtcgacttcagcactgt 8570212



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 68/78 (87%)
 Strand = Plus / Minus

                                                                           
Query: 355     gagtcgttctgggtttgctactgccacctcgcacgcccgtccgccctaccgagccccacg 414
               |||||||||||||||||||||||||||||| | || |||     ||| ||||||||||| 
Sbjct: 8570119 gagtcgttctgggtttgctactgccacctcacgcggccggttagcctgccgagccccacc 8570060

                                 
Query: 415     gacctgcatcttttcaag 432
               ||||||||||||||||||
Sbjct: 8570059 gacctgcatcttttcaag 8570042



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                           
Query: 54      cccagccgaccaaatcgccgcacgagggggcgccatggaggcggcggtggagaggaaggt 113
               |||||| |||||||||||||||  |||| ||||||||||| |||||| ||||| || || 
Sbjct: 8570653 cccagcggaccaaatcgccgcagcagggcgcgccatggagccggcggcggagaagaggga 8570594

                                
Query: 114     gcccgagcaggaggagc 130
               | |||||||||||||||
Sbjct: 8570593 ggccgagcaggaggagc 8570577



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                            
Query: 223     aaccgcgagctcaaggccggcctccatcc 251
               ||||||||||||||||||||| |||||||
Sbjct: 8570499 aaccgcgagctcaaggccggcttccatcc 8570471
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 90      ggaggcggcggtggagaggaagg 112
               |||||||||||||||||||||||
Sbjct: 4658896 ggaggcggcggtggagaggaagg 4658874
to top
>dbj|AP004738.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0090D06
          Length = 174500

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 90     ggaggcggcggtggagaggaagg 112
              |||||||||||||||||||||||
Sbjct: 146260 ggaggcggcggtggagaggaagg 146238
to top
>dbj|AP003514.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0698A06
          Length = 156514

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 90    ggaggcggcggtggagaggaagg 112
             |||||||||||||||||||||||
Sbjct: 21495 ggaggcggcggtggagaggaagg 21473
to top
>ref|XM_418732.1| PREDICTED: Gallus gallus similar to juxtaposed with another zinc
          finger gene 1 (LOC420633), mRNA
          Length = 1264

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 74 cacgagggggcgccatggaggcggcg 99
          |||||||||||||||||| |||||||
Sbjct: 37 cacgagggggcgccatggcggcggcg 62
to top
>ref|NM_181005.2| Bos taurus chromogranin A (parathyroid secretory protein 1) (CHGA),
            mRNA
          Length = 1928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  gcccgagcaggaggagcagct 134
            |||||||||||||||||||||
Sbjct: 1141 gcccgagcaggaggagcagct 1161
to top
>gb|L81176.2|PSEFLAOP Pseudomonas aeruginosa flagellin (fliC) gene, partial cds; FlaG
            (flaG), flagellar cap (fliD), FliS (fliS), and FleQ
            (fleQ) genes, complete cds; and unknown genes
          Length = 5735

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  aggacaacatcaagaagatcgtcga 341
            ||||||||||||||||| |||||||
Sbjct: 2182 aggacaacatcaagaagttcgtcga 2206
to top
>gb|S79268.1|S79256S7 chromogranin A [cattle, Genomic, 535 nt, segment 7 of 8]
          Length = 535

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 114 gcccgagcaggaggagcagct 134
           |||||||||||||||||||||
Sbjct: 190 gcccgagcaggaggagcagct 210
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 81       gggcgccatggaggcggcggtggag 105
                |||||||||||||| ||||||||||
Sbjct: 35868330 gggcgccatggaggtggcggtggag 35868354



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 93       ggcggcggtggagaggaagg 112
                ||||||||||||||||||||
Sbjct: 17896784 ggcggcggtggagaggaagg 17896765
to top
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_E10
          Length = 107284

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 81    gggcgccatggaggcggcggtggag 105
             |||||||||||||| ||||||||||
Sbjct: 58876 gggcgccatggaggtggcggtggag 58900
to top
>gb|AF139825.1|AF139825 Pseudomonas aeruginosa strain PA103 flagellar cap protein FliD (fliD)
            and FliS (fliS) genes, complete cds
          Length = 2047

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  aggacaacatcaagaagatcgtcga 341
            ||||||||||||||||| |||||||
Sbjct: 997  aggacaacatcaagaagttcgtcga 1021
to top
>gb|AF139824.1|AF139824 Pseudomonas aeruginosa strain PAK flagellar cap protein FliD (fliD)
            and FliS (fliS) genes, complete cds
          Length = 2095

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  aggacaacatcaagaagatcgtcga 341
            ||||||||||||||||| |||||||
Sbjct: 1018 aggacaacatcaagaagttcgtcga 1042
to top
>gb|AF139823.1|AF139823 Pseudomonas aeruginosa strain cs2 flagellar cap protein FliD (fliD)
            and FliS (fliS) genes, complete cds
          Length = 2049

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  aggacaacatcaagaagatcgtcga 341
            ||||||||||||||||| |||||||
Sbjct: 998  aggacaacatcaagaagttcgtcga 1022
to top
>gb|AF139822.1|AF139822 Pseudomonas aeruginosa strain cs32 flagellar cap protein FliD (fliD)
            and FliS (fliS) genes, complete cds
          Length = 2053

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 317  aggacaacatcaagaagatcgtcga 341
            ||||||||||||||||| |||||||
Sbjct: 998  aggacaacatcaagaagttcgtcga 1022
to top
>dbj|AK100741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118E17, full
            insert sequence
          Length = 2846

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 81   gggcgccatggaggcggcggtggag 105
            |||||||||||||| ||||||||||
Sbjct: 2087 gggcgccatggaggtggcggtggag 2111
to top
>dbj|AK100456.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091F20, full
            insert sequence
          Length = 2729

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 81   gggcgccatggaggcggcggtggag 105
            |||||||||||||| ||||||||||
Sbjct: 2090 gggcgccatggaggtggcggtggag 2114
to top
>gb|U73523.1|BTU73523 Bos taurus chromogranin A mRNA, complete cds
          Length = 1928

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  gcccgagcaggaggagcagct 134
            |||||||||||||||||||||
Sbjct: 1141 gcccgagcaggaggagcagct 1161
to top
>emb|X04298.1|BTCHROMA Bovine mRNA for chromogranin A
          Length = 1883

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  gcccgagcaggaggagcagct 134
            |||||||||||||||||||||
Sbjct: 1093 gcccgagcaggaggagcagct 1113
to top
>gb|M16971.1|BOVSPI Bovine pituitary secretory protein I (SP-I) mRNA, complete cds
          Length = 1614

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 114  gcccgagcaggaggagcagct 134
            |||||||||||||||||||||
Sbjct: 1080 gcccgagcaggaggagcagct 1100
to top
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     cccgagcaggaggagcagct 134
               ||||||||||||||||||||
Sbjct: 2972662 cccgagcaggaggagcagct 2972681
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    acacgccggacgcccgggac 299
              ||||||||||||||||||||
Sbjct: 512882 acacgccggacgcccgggac 512901
to top
>ref|XM_465851.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 642

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 93  ggcggcggtggagaggaagg 112
           ||||||||||||||||||||
Sbjct: 445 ggcggcggtggagaggaagg 464
to top
>gb|AY770836.1| Salix burjatica microsatellite SB880 sequence
          Length = 190

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 88  atggaggcggcggtggagaggaag 111
           |||| |||||||||||||||||||
Sbjct: 150 atggtggcggcggtggagaggaag 173
to top
>ref|XM_504412.1| Yarrowia lipolytica CLIB122, YALI0E26125g predicted mRNA
          Length = 699

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 86  ccatggaggcggcggtggagagga 109
           |||||||||||||||||| |||||
Sbjct: 43  ccatggaggcggcggtggcgagga 20
to top
>emb|CR936324.2| Medicago truncatula chromosome 5 clone mth2-62a22, COMPLETE SEQUENCE
          Length = 121881

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 88     atggaggcggcggtggagag 107
              ||||||||||||||||||||
Sbjct: 116159 atggaggcggcggtggagag 116178
to top
>ref|NM_176751.1| Drosophila melanogaster CG8557-RB, transcript variant B (CG8557),
            mRNA
          Length = 6900

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  cccgagcaggaggagcagct 134
            ||||||||||||||||||||
Sbjct: 3328 cccgagcaggaggagcagct 3347
to top
>dbj|AP007151.1| Aspergillus oryzae RIB40 genomic DNA, SC005
          Length = 4429080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 87      catggaggcggcggtggagaggaa 110
               ||||||||||| ||||||||||||
Sbjct: 4261526 catggaggcggaggtggagaggaa 4261549
to top
>ref|NM_132990.2| Drosophila melanogaster CG8557-RA, transcript variant A (CG8557),
            mRNA
          Length = 7080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  cccgagcaggaggagcagct 134
            ||||||||||||||||||||
Sbjct: 3508 cccgagcaggaggagcagct 3527
to top
>gb|AY069788.1| Drosophila melanogaster SD02996 full length cDNA
          Length = 7107

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 115  cccgagcaggaggagcagct 134
            ||||||||||||||||||||
Sbjct: 3508 cccgagcaggaggagcagct 3527
to top
>gb|AC092493.1|AC092493 Drosophila melanogaster, chromosome X, region 15C-15D, BAC clone
              BACR10J22, complete sequence
          Length = 157457

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    cccgagcaggaggagcagct 134
              ||||||||||||||||||||
Sbjct: 130991 cccgagcaggaggagcagct 131010
to top
>gb|AC022347.2|AC022347 Drosophila melanogaster, chromosome X, region 15F-15F, BAC clone
             BACR35G15, complete sequence
          Length = 168615

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   cccgagcaggaggagcagct 134
             ||||||||||||||||||||
Sbjct: 57235 cccgagcaggaggagcagct 57216
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 93       ggcggcggtggagaggaagg 112
                ||||||||||||||||||||
Sbjct: 13860879 ggcggcggtggagaggaagg 13860860
to top
>dbj|BA000013.4| Mesorhizobium loti MAFF303099 pMLa DNA, cpmplete genome
          Length = 351911

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 336    cgtcgatttcagcactgtcg 355
              ||||||||||||||||||||
Sbjct: 310185 cgtcgatttcagcactgtcg 310204
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 81      gggcgccatggaggcggcggtgga 104
               ||||||||| ||||||||||||||
Sbjct: 4810793 gggcgccatcgaggcggcggtgga 4810770
to top
>gb|AC138127.1| Homo sapiens chromosome 19 clone LLNLR-281G7, complete sequence
          Length = 40616

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   gccccacggacctgcatctt 426
             ||||||||||||||||||||
Sbjct: 26622 gccccacggacctgcatctt 26603
to top
>emb|AJ538842.1|NTA538842 Nicotiana tabacum cDNA-AFLP-fragment BT2-M11-026
          Length = 258

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                       
Query: 310 tcgtacgaggacaacatcaagaagatcgtcgatttcagcactgtcgagtcgttctgggtt 369
           |||||||||||||| |||||||| |  || ||||| || ||||||||    || ||||||
Sbjct: 69  tcgtacgaggacaatatcaagaaaagtgttgattttagaactgtcgaacgattttgggtt 128

                       
Query: 370 tgctactgccac 381
           ||||| ||||||
Sbjct: 129 tgctattgccac 140
to top
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1051E10
          Length = 207782

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ggcggcggtggagaggaagg 112
             ||||||||||||||||||||
Sbjct: 21181 ggcggcggtggagaggaagg 21162
to top
>dbj|AP003852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0440D10
          Length = 144340

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ggcggcggtggagaggaagg 112
             ||||||||||||||||||||
Sbjct: 98282 ggcggcggtggagaggaagg 98263
to top
>dbj|AP004022.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_B06
          Length = 99637

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    ggcggcggtggagaggaagg 112
             ||||||||||||||||||||
Sbjct: 31417 ggcggcggtggagaggaagg 31398
to top
>dbj|AP005069.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654A08
          Length = 154812

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     ggcggcggtggagaggaagg 112
              ||||||||||||||||||||
Sbjct: 136315 ggcggcggtggagaggaagg 136296
to top
>gb|AE003505.3| Drosophila melanogaster chromosome X, section 57 of 74 of the complete
              sequence
          Length = 314205

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    cccgagcaggaggagcagct 134
              ||||||||||||||||||||
Sbjct: 223627 cccgagcaggaggagcagct 223608
to top
>gb|AC005263.1|AC005263 Homo sapiens chromosome 19, cosmid F20489, complete sequence
          Length = 35737

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 407   gccccacggacctgcatctt 426
             ||||||||||||||||||||
Sbjct: 32718 gccccacggacctgcatctt 32699
to top
>emb|CR962121.2| Medicago truncatula chromosome 5 clone mte1-77f5, COMPLETE SEQUENCE
          Length = 107392

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    atggaggcggcggtggagag 107
             ||||||||||||||||||||
Sbjct: 14329 atggaggcggcggtggagag 14348
to top
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 86      ccatggaggcggcggtggagagga 109
               |||||||||||||||||| |||||
Sbjct: 3104025 ccatggaggcggcggtggcgagga 3104002


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,154,536
Number of Sequences: 3902068
Number of extensions: 2154536
Number of successful extensions: 48582
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 48118
Number of HSP's gapped (non-prelim): 464
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top