>P5CS_LYCES (Q96480) Delta 1-pyrroline-5-carboxylate synthetase (P5CS)|
           [Includes: Glutamate 5-kinase (EC 2.7.2.11)
           (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate
           reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde
           dehydrogenase) (Glutamyl-gamm
          Length = 717

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 289 ARDCARRIMSLPMEERVKVL----DLLQRDDAALTISDYNDIISALARG 423
           AR C+RR+ +L  +ER K+L    D L+ ++ A+   +  D+++A   G
Sbjct: 302 ARACSRRLQALSSQERSKILQDIADALEANEKAILAENEADVVAAQQAG 350

>P5CS_ORYSA (O04226) Delta 1-pyrroline-5-carboxylate synthetase (P5CS)|
           [Includes: Glutamate 5-kinase (EC 2.7.2.11)
           (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate
           reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde
           dehydrogenase) (Glutamyl-gamm
          Length = 716

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
 Frame = +1

Query: 175 NGSLLKEQHPASAKVXXXXXXXXXXXXXXXXXXQAQLRARDCARRIMSLPMEERVKVL-- 348
           N S+LK  H                        +  + ARDC+R + +L  EER K+L  
Sbjct: 264 NRSILKVLHGEKIGTLFHKNANLWESSKDVSTREMAVAARDCSRHLQNLSSEERKKILLD 323

Query: 349 --DLLQRDDAALTISDYNDIISALARG 423
             D L+ ++  +   +  D+ +A   G
Sbjct: 324 VADALEANEDLIRSENEADVAAAQVAG 350

>SUPT3_HUMAN (O75486) Transcription initiation protein SPT3 homolog (SPT3-like|
           protein)
          Length = 399

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 363 ALQEVEHLHP--LLHGEAHDPPRAVTRPELSLRAPPPAATVTQFPG 232
           A Q+  HLHP  LL G A  PPR V + E++  A  P +T T   G
Sbjct: 55  AAQKPHHLHPHILLAGSAAVPPR-VLKAEMNNTAASPMSTATSSSG 99

>KAIA_SYNPX (Q7U8R5) Circadian clock protein kaiA|
          Length = 296

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/36 (47%), Positives = 24/36 (66%)
 Frame = +1

Query: 292 RDCARRIMSLPMEERVKVLDLLQRDDAALTISDYND 399
           RD +R + SLP EER ++L+ LQR    L IS ++D
Sbjct: 161 RDPSRFLGSLPTEERRELLESLQRTYRDLLISYFSD 196

>A6_DROME (O46341) Protein a6|
          Length = 409

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 327 HGEAHDPPRAVTRPELSLRAPPPAATVTQ 241
           H E      A  R +LS+R+PPP A +TQ
Sbjct: 138 HNEQEPSSTARVRSQLSMRSPPPLAPLTQ 166

>MAGI2_HUMAN (Q86UL8) Membrane-associated guanylate kinase, WW and PDZ|
            domain-containing protein 2 (Membrane-associated
            guanylate kinase inverted 2) (MAGI-2)
            (Atrophin-1-interacting protein 1)
            (Atrophin-1-interacting protein A)
          Length = 1455

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 109  GKRTAPRFEGARRGHHGSWRTEGRAGRRSG-RETPWP 2
            G   AP F G   G  G+   EGRAG R+G R  P P
Sbjct: 1382 GPGAAPAFAGPGGGGSGALEAEGRAGARAGPRPGPRP 1418

>ERME_SACER (P07287) rRNA adenine N-6-methyltransferase (EC 2.1.1.48)|
           (Macrolide-lincosamide-streptogramin B resistance
           protein) (Erythromycin resistance protein) (NMT)
          Length = 370

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -3

Query: 85  EGARRGHHGSWRTEGRAGRRSG 20
           +G RRG  G  RT GR GRR G
Sbjct: 345 QGGRRGPSGGGRTGGRPGRRGG 366

>MTMR5_HUMAN (O95248) SET-binding factor 1 (Sbf1) (Myotubularin-related protein 5)|
          Length = 1866

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 109  GKRTAPRFEGARRGHHGSWRTEGRAGRRSGRET 11
            G+ T   F  A  G HG W +   +GR SG  T
Sbjct: 1260 GRNTLSGFSSAHMGSHGKWGSVRTSGRSSGLGT 1292

>IFNB_HUMAN (P01574) Interferon beta precursor (IFN-beta) (Fibroblast|
           interferon)
          Length = 187

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 286 RARDCARRIMSLPMEERVKVLDLLQRDDAALTISDYNDIISALAR 420
           R   C +  M+  + E +K L   Q++DAALTI +    I A+ R
Sbjct: 48  RLEYCLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFR 92

>Y1448_METMA (Q8PWX8) UPF0251 protein MM1448|
          Length = 164

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -3

Query: 112 RGKRTAPRFEGARRGHHGSWRTEGRAGRRSGRE 14
           RG RT P  +G   G  G  + +GR GR  G E
Sbjct: 97  RGDRTGPAGQGPAGGGRGRGQGKGRGGRFGGPE 129

>UXAC_BACFR (Q64TY9) Uronate isomerase (EC 5.3.1.12) (Glucuronate isomerase)|
           (Uronic isomerase)
          Length = 468

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 11/61 (18%)
 Frame = +1

Query: 283 LRARDCARRIMSLPMEERVKVLDLLQRDD-----------AALTISDYNDIISALARGGD 429
           +R R+    I  LP     KV+ +    D           + +TISDYND+I AL +  D
Sbjct: 168 IRTRESGFEIKMLPTWRPDKVMAVEVPSDFRTYIEKLSEISEITISDYNDMILALRKRHD 227

Query: 430 Y 432
           Y
Sbjct: 228 Y 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,918,889
Number of Sequences: 219361
Number of extensions: 716929
Number of successful extensions: 2750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2748
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)