>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                            
Query: 284      tccgggcgcgtgactgcgcgaggcggatcatgagcctccccatggaggagcgggtgaagg 343
                |||||||| | |||||||||| |||||||||| | |||||| | ||||||||||| ||||
Sbjct: 12418452 tccgggcgagggactgcgcgaagcggatcatgggactccccgtcgaggagcgggtcaagg 12418511

                                                                            
Query: 344      tgctcgacctcctgcagcgcgacgatgcggcgctcaccatctccgactacaacgacatca 403
                ||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| 
Sbjct: 12418512 tgctcgacctcctgcagcgcgacgacggggcgctcaccgtgtccgactacaacgacatcc 12418571

                                                     
Query: 404      tctccgcgctcgcgaggggcggggactacgactccgc 440
                ||||||||||||| | || ||| ||| ||||||||||
Sbjct: 12418572 tctccgcgctcgccatggccggcgaccacgactccgc 12418608



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 7        atggcgtctctctaccactcctccttcccgctctcccctccgtcctcc 54
                |||||||||| || |||||||||||||||||||||||| || ||||||
Sbjct: 12418169 atggcgtctcccttccactcctccttcccgctctccccgccatcctcc 12418216



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 251      gtggcggcgggaggaggagc 270
                ||||||||||||||||||||
Sbjct: 23589653 gtggcggcgggaggaggagc 23589672

>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0098H14, complete sequence
          Length = 132560

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                         
Query: 284   tccgggcgcgtgactgcgcgaggcggatcatgagcctccccatggaggagcgggtgaagg 343
             |||||||| | |||||||||| |||||||||| | |||||| | ||||||||||| ||||
Sbjct: 77470 tccgggcgagggactgcgcgaagcggatcatgggactccccgtcgaggagcgggtcaagg 77529

                                                                         
Query: 344   tgctcgacctcctgcagcgcgacgatgcggcgctcaccatctccgactacaacgacatca 403
             ||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| 
Sbjct: 77530 tgctcgacctcctgcagcgcgacgacggggcgctcaccgtgtccgactacaacgacatcc 77589

                                                  
Query: 404   tctccgcgctcgcgaggggcggggactacgactccgc 440
             ||||||||||||| | || ||| ||| ||||||||||
Sbjct: 77590 tctccgcgctcgccatggccggcgaccacgactccgc 77626



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 7     atggcgtctctctaccactcctccttcccgctctcccctccgtcctcc 54
             |||||||||| || |||||||||||||||||||||||| || ||||||
Sbjct: 77187 atggcgtctcccttccactcctccttcccgctctccccgccatcctcc 77234

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                            
Query: 284      tccgggcgcgtgactgcgcgaggcggatcatgagcctccccatggaggagcgggtgaagg 343
                |||||||| | |||||||||| |||||||||| | |||||| | ||||||||||| ||||
Sbjct: 12415215 tccgggcgagggactgcgcgaagcggatcatgggactccccgtcgaggagcgggtcaagg 12415274

                                                                            
Query: 344      tgctcgacctcctgcagcgcgacgatgcggcgctcaccatctccgactacaacgacatca 403
                ||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| 
Sbjct: 12415275 tgctcgacctcctgcagcgcgacgacggggcgctcaccgtgtccgactacaacgacatcc 12415334

                                                     
Query: 404      tctccgcgctcgcgaggggcggggactacgactccgc 440
                ||||||||||||| | || ||| ||| ||||||||||
Sbjct: 12415335 tctccgcgctcgccatggccggcgaccacgactccgc 12415371



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                                
Query: 7        atggcgtctctctaccactcctccttcccgctctcccctccgtcctcc 54
                |||||||||| || |||||||||||||||||||||||| || ||||||
Sbjct: 12414932 atggcgtctcccttccactcctccttcccgctctccccgccatcctcc 12414979



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 251      gtggcggcgggaggaggagc 270
                ||||||||||||||||||||
Sbjct: 23582681 gtggcggcgggaggaggagc 23582700

>dbj|AK100067.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013162P09, full
           insert sequence
          Length = 2292

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                       
Query: 284 tccgggcgcgtgactgcgcgaggcggatcatgagcctccccatggaggagcgggtgaagg 343
           |||||||| | |||||||||| |||||||||| | |||||| | ||||||||||| ||||
Sbjct: 406 tccgggcgagggactgcgcgaagcggatcatgggactccccgtcgaggagcgggtcaagg 465

                                                                       
Query: 344 tgctcgacctcctgcagcgcgacgatgcggcgctcaccatctccgactacaacgacatca 403
           ||||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| 
Sbjct: 466 tgctcgacctcctgcagcgcgacgacggggcgctcaccgtgtccgactacaacgacatcc 525

                                                
Query: 404 tctccgcgctcgcgaggggcggggactacgactccgc 440
           ||||||||||||| | || ||| ||| ||||||||||
Sbjct: 526 tctccgcgctcgccatggccggcgaccacgactccgc 562



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                           
Query: 7   atggcgtctctctaccactcctccttcccgctctcccctccgtcctcc 54
           |||||||||| || |||||||||||||||||||||||| || ||||||
Sbjct: 123 atggcgtctcccttccactcctccttcccgctctccccgccatcctcc 170

>gb|AC130211.3| Mus musculus BAC clone RP24-261D2 from 1, complete sequence
          Length = 182051

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                 
Query: 13     tctctctaccactcctccttcccgctctcccctcc 47
              ||||||| || |||||||||||| |||||||||||
Sbjct: 174112 tctctctccctctcctccttccccctctcccctcc 174078

>gb|AC125522.4| Mus musculus BAC clone RP24-363I16 from 1, complete sequence
          Length = 100480

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 13    tctctctaccactcctccttcccgctctcccctcc 47
             ||||||| || |||||||||||| |||||||||||
Sbjct: 29391 tctctctccctctcctccttccccctctcccctcc 29357

>gb|AC147129.3| Mus musculus BAC clone RP24-531L5 from 1, complete sequence
          Length = 147476

 Score = 46.1 bits (23), Expect = 0.097
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 13     tctctctaccactcctccttcccgctctcccctcc 47
              ||||||| || |||||||||||| |||||||||||
Sbjct: 143336 tctctctccctctcctccttccccctctcccctcc 143370

>gb|AC122890.4| Mus musculus BAC clone RP23-63O14 from 8, complete sequence
          Length = 209359

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 266    ggagctctcaggctcagctccg 287
              ||||||||||||||||||||||
Sbjct: 136209 ggagctctcaggctcagctccg 136230

>emb|AL591174.13| Mouse DNA sequence from clone RP23-271B20 on chromosome 11, complete
              sequence
          Length = 205379

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 23     actcctccttcccgctctcccctcc 47
              ||||||||||||| |||||||||||
Sbjct: 104915 actcctccttccctctctcccctcc 104939

>dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP13-270P17, complete
             sequence
          Length = 178812

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    tctctctaccactcctccttc 33
             |||||||||||||||||||||
Sbjct: 22022 tctctctaccactcctccttc 22002

>ref|XM_463235.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1482

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 251 gtggcggcgggaggaggagc 270
           ||||||||||||||||||||
Sbjct: 870 gtggcggcgggaggaggagc 889

>gb|AC091246.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0002I03
             map E1419S, complete sequence
          Length = 150945

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gtggcggcgggaggaggagc 270
             ||||||||||||||||||||
Sbjct: 37736 gtggcggcgggaggaggagc 37755

>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 146     agctcctcggcgcgctccag 165
               ||||||||||||||||||||
Sbjct: 3145412 agctcctcggcgcgctccag 3145431

>gb|AC133892.9| Mus musculus chromosome 1, clone RP23-279J5, complete sequence
          Length = 163620

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tctctctaccactcctcctt 32
             ||||||||||||||||||||
Sbjct: 72747 tctctctaccactcctcctt 72766

>gb|AC129507.9| Homo sapiens chromosome 17, clone RP11-1260E13, complete sequence
          Length = 199102

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 39     ctcccctccgtcctccagctgcca 62
              |||||||| |||||||||||||||
Sbjct: 114173 ctcccctcagtcctccagctgcca 114196

>gb|AC157524.2| Pan troglodytes BAC clone CH251-516K17 from chromosome unknown,
             complete sequence
          Length = 204622

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    ctcctccttcccgctctcccctcc 47
             |||||||||||| |||||||||||
Sbjct: 63673 ctcctccttccccctctcccctcc 63650

>gb|AC153651.4| Mus musculus BAC clone RP24-74B24 from chromosome 7, complete
            sequence
          Length = 256298

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 39   ctcccctccgtcctccagct 58
            ||||||||||||||||||||
Sbjct: 9173 ctcccctccgtcctccagct 9154

>gb|AC141424.3| Homo sapiens chromosome 17, clone RP13-803G22, complete sequence
          Length = 140126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    ctcccctccgtcctccagctgcca 62
             |||||||| |||||||||||||||
Sbjct: 22189 ctcccctcagtcctccagctgcca 22166

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 339     gaaggtgctcgacctcctgcagcg 362
               ||||||||||||||| ||||||||
Sbjct: 2396133 gaaggtgctcgacctgctgcagcg 2396110

>dbj|BS000156.1| Pan troglodytes chromosome 22 clone:RP43-145H09, map 22, complete
             sequences
          Length = 152714

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    ctcctccttcccgctctcccctcc 47
             |||||||||||| |||||||||||
Sbjct: 97535 ctcctccttccccctctcccctcc 97558

>emb|AL954225.2|PTB448G23 Pan troglodytes chromosome 22 BAC PTB-448G23, complete sequence
          Length = 173384

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    ctcctccttcccgctctcccctcc 47
             |||||||||||| |||||||||||
Sbjct: 64263 ctcctccttccccctctcccctcc 64286

>emb|AL929332.15| Mouse DNA sequence from clone RP23-476I19 on chromosome 2, complete
             sequence
          Length = 112785

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 181   agcctcctcaaagaacaacatccc 204
             ||||||||||||||||||| ||||
Sbjct: 82071 agcctcctcaaagaacaacttccc 82094

>gb|AC159636.3| Mus musculus BAC clone RP24-93H15 from chromosome 12, complete sequence
          Length = 184821

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ggagctctcaggctcagctc 285
              ||||||||||||||||||||
Sbjct: 131934 ggagctctcaggctcagctc 131953

>emb|AL831794.6| Mouse DNA sequence from clone RP23-114B13 on chromosome 2, complete
             sequence
          Length = 223128

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 24    ctcctccttcccgctctcccctcc 47
             |||||||||||| |||||||||||
Sbjct: 45436 ctcctccttccccctctcccctcc 45413

>gb|AC170864.2| Mus musculus BAC clone RP24-576D1 from chromosome 7, complete sequence
          Length = 208952

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     ctcccctccgtcctccagct 58
              ||||||||||||||||||||
Sbjct: 161212 ctcccctccgtcctccagct 161193


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,215,337
Number of Sequences: 3902068
Number of extensions: 3215337
Number of successful extensions: 67763
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67306
Number of HSP's gapped (non-prelim): 457
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)