ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet24f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187543.1| Oryza sativa (japonica cultivar-group), predic... 180 2e-42
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 180 2e-42
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
4gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
5ref|NM_197381.1| Oryza sativa (japonica cultivar-group) hypothet... 178 8e-42
6gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 geno... 178 8e-42
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 178 8e-42
8dbj|AK108730.1| Oryza sativa (japonica cultivar-group) cDNA clon... 178 8e-42
9gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 178 8e-42
10ref|XM_476934.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
11ref|XM_615562.2| PREDICTED: Bos taurus similar to TLH29 protein ... 42 1.2
12ref|XM_537163.2| PREDICTED: Canis familiaris similar to niban pr... 42 1.2
13emb|AJ843080.1| Streptomyces fradiae neomycin biosynthetic gene ... 42 1.2
14gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 42 1.2
15emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 42 1.2
16emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 42 1.2
17gb|BC114186.1| Bos taurus cDNA clone MGC:140204 IMAGE:8170783, c... 42 1.2
18dbj|AB211959.1| Streptomyces fradiae orf6, neoU, neoT, neoS, neo... 42 1.2
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
20dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.2
21dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
22dbj|AP005877.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
23dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
24tpe|BN000215.1|BTA000215 TPA: TPA_inf: Bos taurus partial mRNA f... 42 1.2
25emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene ... 42 1.2
26ref|XM_550409.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
27ref|NM_189568.2| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
28ref|XM_472395.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
29ref|NM_187553.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
30ref|NM_001030924.1| Gallus gallus pleckstrin homology domain con... 40 4.7
31ref|XM_450839.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
32gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 4.7
33ref|XM_415912.1| PREDICTED: Gallus gallus similar to RNA-binding... 40 4.7
34gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 4.7
35gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 4.7
36emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.7
37emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 4.7
38emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4,... 40 4.7
39emb|AJ719533.1| Gallus gallus mRNA for hypothetical protein, clo... 40 4.7
40dbj|AB207102.1| Acidovorax avenae subsp. avenae Hrp gene cluster... 40 4.7
41gb|AC016398.6| Homo sapiens chromosome 10 clone RP11-561G1, comp... 40 4.7
42gb|AC025038.6| Homo sapiens chromosome 10 clone RP11-443O13, com... 40 4.7
43dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
44dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
46gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complet... 40 4.7
47dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.7
48dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 4.7
49dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
50dbj|AP003342.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
51dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
52dbj|AK109424.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
53dbj|AK108077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
54dbj|AK106185.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
55dbj|AK106173.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
56dbj|AK069381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
57dbj|AK068728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
58dbj|AK065210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
59gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.7
60gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 4.7 
>ref|NM_187543.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1572

 Score =  180 bits (91), Expect = 2e-42
 Identities = 180/210 (85%), Gaps = 6/210 (2%)
 Strand = Plus / Plus

                                                                       
Query: 148 tacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcgcac 207
           ||||| ||||||||||||| |||| |||||  || |||||| ||||||||||||  | ||
Sbjct: 55  tacgccgccctggccgtggtggcgctgcggatggcgctgtcgtacaagtcggcgctgtac 114

                                                                       
Query: 208 gcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactacgag 267
           |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 115 gcggtgcggcggctgtggcggtgggccgacgagtgggcgcaggcgtaccagtaccacgag 174

                                                                       
Query: 268 gtgccgcgcttcgc------cggcgaaggggccgagaacccgctctcccgcaaggcggcg 321
           ||||| ||||||||      |||||  || |||||||||||||| | |||||||||||||
Sbjct: 175 gtgccacgcttcgcgtgcgacggcggcggcgccgagaacccgctgttccgcaaggcggcg 234

                                         
Query: 322 gcgtacgtggcgtcgctgccgtcgctcgag 351
             ||||||||||  ||||||||||||||||
Sbjct: 235 cagtacgtggcggtgctgccgtcgctcgag 264
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  180 bits (91), Expect = 2e-42
 Identities = 180/210 (85%), Gaps = 6/210 (2%)
 Strand = Plus / Minus

                                                                          
Query: 148    tacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcgcac 207
              ||||| ||||||||||||| |||| |||||  || |||||| ||||||||||||  | ||
Sbjct: 792944 tacgccgccctggccgtggtggcgctgcggatggcgctgtcgtacaagtcggcgctgtac 792885

                                                                          
Query: 208    gcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactacgag 267
              |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 792884 gcggtgcggcggctgtggcggtgggccgacgagtgggcgcaggcgtaccagtaccacgag 792825

                                                                          
Query: 268    gtgccgcgcttcgc------cggcgaaggggccgagaacccgctctcccgcaaggcggcg 321
              ||||| ||||||||      |||||  || |||||||||||||| | |||||||||||||
Sbjct: 792824 gtgccacgcttcgcgtgcgacggcggcggcgccgagaacccgctgttccgcaaggcggcg 792765

                                            
Query: 322    gcgtacgtggcgtcgctgccgtcgctcgag 351
                ||||||||||  ||||||||||||||||
Sbjct: 792764 cagtacgtggcggtgctgccgtcgctcgag 792735



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    tctcccgcaaggcggcggcg 324
              ||||||||||||||||||||
Sbjct: 841018 tctcccgcaaggcggcggcg 840999
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  180 bits (91), Expect = 2e-42
 Identities = 180/210 (85%), Gaps = 6/210 (2%)
 Strand = Plus / Minus

                                                                          
Query: 148    tacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcgcac 207
              ||||| ||||||||||||| |||| |||||  || |||||| ||||||||||||  | ||
Sbjct: 792942 tacgccgccctggccgtggtggcgctgcggatggcgctgtcgtacaagtcggcgctgtac 792883

                                                                          
Query: 208    gcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactacgag 267
              |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 792882 gcggtgcggcggctgtggcggtgggccgacgagtgggcgcaggcgtaccagtaccacgag 792823

                                                                          
Query: 268    gtgccgcgcttcgc------cggcgaaggggccgagaacccgctctcccgcaaggcggcg 321
              ||||| ||||||||      |||||  || |||||||||||||| | |||||||||||||
Sbjct: 792822 gtgccacgcttcgcgtgcgacggcggcggcgccgagaacccgctgttccgcaaggcggcg 792763

                                            
Query: 322    gcgtacgtggcgtcgctgccgtcgctcgag 351
                ||||||||||  ||||||||||||||||
Sbjct: 792762 cagtacgtggcggtgctgccgtcgctcgag 792733



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    tctcccgcaaggcggcggcg 324
              ||||||||||||||||||||
Sbjct: 841016 tctcccgcaaggcggcggcg 840997
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>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0090O10, complete sequence
          Length = 162132

 Score =  180 bits (91), Expect = 2e-42
 Identities = 180/210 (85%), Gaps = 6/210 (2%)
 Strand = Plus / Minus

                                                                         
Query: 148   tacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcgcac 207
             ||||| ||||||||||||| |||| |||||  || |||||| ||||||||||||  | ||
Sbjct: 88489 tacgccgccctggccgtggtggcgctgcggatggcgctgtcgtacaagtcggcgctgtac 88430

                                                                         
Query: 208   gcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactacgag 267
             |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 88429 gcggtgcggcggctgtggcggtgggccgacgagtgggcgcaggcgtaccagtaccacgag 88370

                                                                         
Query: 268   gtgccgcgcttcgc------cggcgaaggggccgagaacccgctctcccgcaaggcggcg 321
             ||||| ||||||||      |||||  || |||||||||||||| | |||||||||||||
Sbjct: 88369 gtgccacgcttcgcgtgcgacggcggcggcgccgagaacccgctgttccgcaaggcggcg 88310

                                           
Query: 322   gcgtacgtggcgtcgctgccgtcgctcgag 351
               ||||||||||  ||||||||||||||||
Sbjct: 88309 cagtacgtggcggtgctgccgtcgctcgag 88280



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 305    tctcccgcaaggcggcggcg 324
              ||||||||||||||||||||
Sbjct: 136563 tctcccgcaaggcggcggcg 136544
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>ref|NM_197381.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBb0018B10.3), mRNA
          Length = 1599

 Score =  178 bits (90), Expect = 8e-42
 Identities = 129/142 (90%)
 Strand = Plus / Plus

                                                                       
Query: 145 gcgtacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcg 204
           ||||||||||| ||||| |||| |||| |||||| ||||||||| |||||||||| ||||
Sbjct: 55  gcgtacgcggcgctggcggtggtggcgctgcgggtggtgctgtcgtacaagtcggtggcg 114

                                                                       
Query: 205 cacgcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 264
           ||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cacgcggtgcggaggatgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 174

                                 
Query: 265 gaggtgccgcgcttcgccggcg 286
           ||||||||||| |||| |||||
Sbjct: 175 gaggtgccgcggttcggcggcg 196



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                              
Query: 313 aaggcggcggcgtacgtggcgtcgctgccgtcgct 347
           ||||||||||||||||||||| |||||||||||||
Sbjct: 232 aaggcggcggcgtacgtggcggcgctgccgtcgct 266
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>gb|AC051634.6| Oryza sativa chromosome 10 BAC OSJNBb0018B10 genomic sequence, complete
             sequence
          Length = 135789

 Score =  178 bits (90), Expect = 8e-42
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                         
Query: 145   gcgtacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcg 204
             ||||||||||| ||||| |||| |||| |||||| ||||||||| |||||||||| ||||
Sbjct: 21621 gcgtacgcggcgctggcggtggtggcgctgcgggtggtgctgtcgtacaagtcggtggcg 21562

                                                                         
Query: 205   cacgcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 264
             ||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21561 cacgcggtgcggaggatgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 21502

                                   
Query: 265   gaggtgccgcgcttcgccggcg 286
             ||||||||||| |||| |||||
Sbjct: 21501 gaggtgccgcggttcggcggcg 21480



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                
Query: 313   aaggcggcggcgtacgtggcgtcgctgccgtcgct 347
             ||||||||||||||||||||| |||||||||||||
Sbjct: 21444 aaggcggcggcgtacgtggcggcgctgccgtcgct 21410
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  178 bits (90), Expect = 8e-42
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                            
Query: 145      gcgtacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcg 204
                ||||||||||| ||||| |||| |||| |||||| ||||||||| |||||||||| ||||
Sbjct: 19564430 gcgtacgcggcgctggcggtggtggcgctgcgggtggtgctgtcgtacaagtcggtggcg 19564371

                                                                            
Query: 205      cacgcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 264
                ||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19564370 cacgcggtgcggaggatgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 19564311

                                      
Query: 265      gaggtgccgcgcttcgccggcg 286
                ||||||||||| |||| |||||
Sbjct: 19564310 gaggtgccgcggttcggcggcg 19564289



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 313      aaggcggcggcgtacgtggcgtcgctgccgtcgct 347
                ||||||||||||||||||||| |||||||||||||
Sbjct: 19564253 aaggcggcggcgtacgtggcggcgctgccgtcgct 19564219
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>dbj|AK108730.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-D02, full
           insert sequence
          Length = 1900

 Score =  178 bits (90), Expect = 8e-42
 Identities = 179/209 (85%), Gaps = 6/209 (2%)
 Strand = Plus / Plus

                                                                       
Query: 148 tacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcgcac 207
           ||||| ||||||||||||| |||| |||||  || |||||| ||||||||||||  | ||
Sbjct: 129 tacgccgccctggccgtggtggcgctgcggatggcgctgtcgtacaagtcggcgctgtac 188

                                                                       
Query: 208 gcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactacgag 267
           |||| ||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 189 gcggtgcggcggctgtggcggtgggccgacgagtgggcgcaggcgtaccagtaccacgag 248

                                                                       
Query: 268 gtgccgcgcttcgc------cggcgaaggggccgagaacccgctctcccgcaaggcggcg 321
           ||||| ||||||||      |||||  || |||||||||||||| | |||||||||||||
Sbjct: 249 gtgccacgcttcgcgtgcgacggcggcggcgccgagaacccgctgttccgcaaggcggcg 308

                                        
Query: 322 gcgtacgtggcgtcgctgccgtcgctcga 350
             ||||||||||  |||||||||||||||
Sbjct: 309 cagtacgtggcggtgctgccgtcgctcga 337
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  178 bits (90), Expect = 8e-42
 Identities = 129/142 (90%)
 Strand = Plus / Minus

                                                                            
Query: 145      gcgtacgcggccctggccgtggcggcggtgcgggcggtgctgtcctacaagtcggcggcg 204
                ||||||||||| ||||| |||| |||| |||||| ||||||||| |||||||||| ||||
Sbjct: 19575706 gcgtacgcggcgctggcggtggtggcgctgcgggtggtgctgtcgtacaagtcggtggcg 19575647

                                                                            
Query: 205      cacgcggcgcgccggctgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 264
                ||||||| |||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19575646 cacgcggtgcggaggatgtggcggtgggcggacgagtgggcgcaggcgtaccagtactac 19575587

                                      
Query: 265      gaggtgccgcgcttcgccggcg 286
                ||||||||||| |||| |||||
Sbjct: 19575586 gaggtgccgcggttcggcggcg 19575565



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 34/35 (97%)
 Strand = Plus / Minus

                                                   
Query: 313      aaggcggcggcgtacgtggcgtcgctgccgtcgct 347
                ||||||||||||||||||||| |||||||||||||
Sbjct: 19575529 aaggcggcggcgtacgtggcggcgctgccgtcgct 19575495
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>ref|XM_476934.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3414

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 144 ggcgtacgcggccctggccgtggcggcgg 172
           |||| |||||||| |||||||||||||||
Sbjct: 334 ggcggacgcggccgtggccgtggcggcgg 362
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>ref|XM_615562.2| PREDICTED: Bos taurus similar to TLH29 protein precursor
           (LOC535465), mRNA
          Length = 732

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 154 gccctggccgtggcggcggtgcgggcggtgctg 186
           ||||||||||||||||| ||||  |||||||||
Sbjct: 355 gccctggccgtggcggcagtgcccgcggtgctg 387
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>ref|XM_537163.2| PREDICTED: Canis familiaris similar to niban protein isoform 2
           (LOC480041), mRNA
          Length = 6350

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 164 tggcggcggtgcgggcggtgc 184
           |||||||||||||||||||||
Sbjct: 99  tggcggcggtgcgggcggtgc 79
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>emb|AJ843080.1| Streptomyces fradiae neomycin biosynthetic gene cluster, strain MCIMB
             8233
          Length = 30837

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 197   cggcggcgcacgcggcgcgcc 217
             |||||||||||||||||||||
Sbjct: 23962 cggcggcgcacgcggcgcgcc 23942
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 196     tcggcggcgcacgcggcgcgccggc 220
               |||||||||| ||||||||||||||
Sbjct: 2701622 tcggcggcgcccgcggcgcgccggc 2701646
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>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 151    gcggccctggccgtggcggcggtgcgggc 179
              ||||||||||||| |||||| ||||||||
Sbjct: 202311 gcggccctggccgaggcggccgtgcgggc 202283
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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 151   gcggccctggccgtggcggcggtgcgggc 179
             ||||||||||||| |||||| ||||||||
Sbjct: 39726 gcggccctggccgaggcggccgtgcgggc 39754
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>gb|BC114186.1| Bos taurus cDNA clone MGC:140204 IMAGE:8170783, complete cds
          Length = 534

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 154 gccctggccgtggcggcggtgcgggcggtgctg 186
           ||||||||||||||||| ||||  |||||||||
Sbjct: 69  gccctggccgtggcggcagtgcccgcggtgctg 101
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>dbj|AB211959.1| Streptomyces fradiae orf6, neoU, neoT, neoS, neoR, neoA, neoB, neoC,
             neoD, neoE, neoF, neoG, neoH, neoI, neoJ, neoK, neoL,
             neoM, neoN, neoO, neoP, neoQ, orf1, orf2, orf3, orf4, orf5
             genes, complete and partial cds
          Length = 39237

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 197   cggcggcgcacgcggcgcgcc 217
             |||||||||||||||||||||
Sbjct: 27779 cggcggcgcacgcggcgcgcc 27759
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 144     ggcgtacgcggccctggccgtggcggcgg 172
               |||| |||||||| |||||||||||||||
Sbjct: 4744337 ggcggacgcggccgtggccgtggcggcgg 4744309
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 170     cggtgcgggcggtgctgtcct 190
               |||||||||||||||||||||
Sbjct: 1086908 cggtgcgggcggtgctgtcct 1086928



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    gcggcggtgcgggcggtgct 185
              ||||||||||||||||||||
Sbjct: 294898 gcggcggtgcgggcggtgct 294917
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>dbj|AP005179.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0084L07
          Length = 127992

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 144   ggcgtacgcggccctggccgtggcggcgg 172
             |||| |||||||| |||||||||||||||
Sbjct: 62247 ggcggacgcggccgtggccgtggcggcgg 62219
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>dbj|AP005877.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0002L09
          Length = 146343

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 144   ggcgtacgcggccctggccgtggcggcgg 172
             |||| |||||||| |||||||||||||||
Sbjct: 18850 ggcggacgcggccgtggccgtggcggcgg 18822
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>dbj|AK100285.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075D23, full
           insert sequence
          Length = 3414

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 144 ggcgtacgcggccctggccgtggcggcgg 172
           |||| |||||||| |||||||||||||||
Sbjct: 334 ggcggacgcggccgtggccgtggcggcgg 362
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>tpe|BN000215.1|BTA000215 TPA: TPA_inf: Bos taurus partial mRNA for putative ISG12(b) protein
           (isg12(b) gene)
          Length = 420

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 154 gccctggccgtggcggcggtgcgggcggtgctg 186
           ||||||||||||||||| ||||  |||||||||
Sbjct: 35  gccctggccgtggcggcagtgcccgcggtgctg 67
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>emb|AJ629247.1| Streptomyces fradiae neomycin biosynthesis gene cluster, strain DSM
             40063
          Length = 50466

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 197   cggcggcgcacgcggcgcgcc 217
             |||||||||||||||||||||
Sbjct: 32508 cggcggcgcacgcggcgcgcc 32488
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>ref|XM_550409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1125

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 158 tggccgtggcggcggtgcgggcgg 181
           |||| |||||||||||||||||||
Sbjct: 123 tggcggtggcggcggtgcgggcgg 146
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>ref|NM_189568.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1087

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 158 tggccgtggcggcggtgcgggcgg 181
           |||| |||||||||||||||||||
Sbjct: 60  tggcggtggcggcggtgcgggcgg 83
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>ref|XM_472395.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1068

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 cgaggtgccgcgcttcgccggcga 287
           ||||||| ||||||||||||||||
Sbjct: 945 cgaggtggcgcgcttcgccggcga 968
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>ref|NM_187553.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 305 tctcccgcaaggcggcggcg 324
           ||||||||||||||||||||
Sbjct: 107 tctcccgcaaggcggcggcg 126
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>ref|NM_001030924.1| Gallus gallus pleckstrin homology domain containing, family M (with
           RUN domain) member 1 (PLEKHM1), mRNA
          Length = 3869

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 gctgtcctacaagtcggcgg 202
           ||||||||||||||||||||
Sbjct: 598 gctgtcctacaagtcggcgg 617
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>ref|XM_450839.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 741

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 195 gtcggcggcgcacgcggcgcgccg 218
           |||| |||||||||||||||||||
Sbjct: 649 gtcgccggcgcacgcggcgcgccg 672
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   gcggcgcacgcggcgcgccg 218
             ||||||||||||||||||||
Sbjct: 86275 gcggcgcacgcggcgcgccg 86256
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>ref|XM_415912.1| PREDICTED: Gallus gallus similar to RNA-binding protein Musashi2-L
            (LOC417667), mRNA
          Length = 2428

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 165  ggcggcggtgcgggcggtgc 184
            ||||||||||||||||||||
Sbjct: 1257 ggcggcggtgcgggcggtgc 1276
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    gcggcgcacgcggcgcgccg 218
              ||||||||||||||||||||
Sbjct: 613900 gcggcgcacgcggcgcgccg 613919
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 157     ctggccgtggcggcggtgcgggcg 180
               ||||||||||||||||||| ||||
Sbjct: 3194346 ctggccgtggcggcggtgctggcg 3194323
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 199    gcggcgcacgcggcgcgccg 218
              ||||||||||||||||||||
Sbjct: 422437 gcggcgcacgcggcgcgccg 422456
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 152    cggccctggccgtggcggcggtgcgggc 179
              |||||| ||| |||||||||||||||||
Sbjct: 296790 cggcccgggcggtggcggcggtgcgggc 296817
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>emb|AL662947.3|OSJN00148 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073L04,
             complete sequence
          Length = 143301

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 264   cgaggtgccgcgcttcgccggcga 287
             ||||||| ||||||||||||||||
Sbjct: 21152 cgaggtggcgcgcttcgccggcga 21175
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>emb|AJ719533.1| Gallus gallus mRNA for hypothetical protein, clone 3c7
          Length = 3869

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 gctgtcctacaagtcggcgg 202
           ||||||||||||||||||||
Sbjct: 598 gctgtcctacaagtcggcgg 617
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>dbj|AB207102.1| Acidovorax avenae subsp. avenae Hrp gene cluster, complete cds, strain:
             N1141
          Length = 66987

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   cgtggcggcggtgcgggcgg 181
             ||||||||||||||||||||
Sbjct: 51317 cgtggcggcggtgcgggcgg 51298
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>gb|AC016398.6| Homo sapiens chromosome 10 clone RP11-561G1, complete sequence
          Length = 158817

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ctccttctcctacccttctc 20
              ||||||||||||||||||||
Sbjct: 142854 ctccttctcctacccttctc 142835
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>gb|AC025038.6| Homo sapiens chromosome 10 clone RP11-443O13, complete sequence
          Length = 163132

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ctccttctcctacccttctc 20
              ||||||||||||||||||||
Sbjct: 150310 ctccttctcctacccttctc 150329
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 264      cgaggtgccgcgcttcgccggcga 287
                ||||||| ||||||||||||||||
Sbjct: 20290519 cgaggtggcgcgcttcgccggcga 20290542
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 195      gtcggcggcgcacgcggcgcgccg 218
                |||| |||||||||||||||||||
Sbjct: 13101434 gtcgccggcgcacgcggcgcgccg 13101411
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 62       accgtgcgcgcgactcctcc 81
                ||||||||||||||||||||
Sbjct: 21533753 accgtgcgcgcgactcctcc 21533734



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 158     tggccgtggcggcggtgcgggcgg 181
               |||| |||||||||||||||||||
Sbjct: 4314712 tggcggtggcggcggtgcgggcgg 4314689
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>gb|AC010092.4| Homo sapiens BAC clone RP11-306M1 from 2, complete sequence
          Length = 140226

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    ctccttctcctacccttctc 20
            ||||||||||||||||||||
Sbjct: 8576 ctccttctcctacccttctc 8595
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 165     ggcggcggtgcgggcggtgc 184
               ||||||||||||||||||||
Sbjct: 5200248 ggcggcggtgcgggcggtgc 5200267



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 165     ggcggcggtgcgggcggtgc 184
               ||||||||||||||||||||
Sbjct: 3135482 ggcggcggtgcgggcggtgc 3135501
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 163     gtggcggcggtgcgggcggtgctg 186
               ||||||||||||| ||||||||||
Sbjct: 3542774 gtggcggcggtgctggcggtgctg 3542751
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0666G04
          Length = 141983

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 158   tggccgtggcggcggtgcgggcgg 181
             |||| |||||||||||||||||||
Sbjct: 94482 tggcggtggcggcggtgcgggcgg 94459
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>dbj|AP003342.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0049O23
          Length = 121038

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 62    accgtgcgcgcgactcctcc 81
             ||||||||||||||||||||
Sbjct: 27292 accgtgcgcgcgactcctcc 27273
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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0048A13
          Length = 137680

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   gtcggcggcgcacgcggcgcgccg 218
             |||| |||||||||||||||||||
Sbjct: 23524 gtcgccggcgcacgcggcgcgccg 23501
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>dbj|AK109424.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A09, full
           insert sequence
          Length = 1112

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 158 tggccgtggcggcggtgcgggcgg 181
           |||| |||||||||||||||||||
Sbjct: 101 tggcggtggcggcggtgcgggcgg 124
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>dbj|AK108077.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E01, full
            insert sequence
          Length = 1481

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 264  cgaggtgccgcgcttcgccggcga 287
            ||||||| ||||||||||||||||
Sbjct: 1030 cgaggtggcgcgcttcgccggcga 1053
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>dbj|AK106185.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-D07, full
           insert sequence
          Length = 1087

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 158 tggccgtggcggcggtgcgggcgg 181
           |||| |||||||||||||||||||
Sbjct: 60  tggcggtggcggcggtgcgggcgg 83
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>dbj|AK106173.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-C03, full
           insert sequence
          Length = 1122

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 158 tggccgtggcggcggtgcgggcgg 181
           |||| |||||||||||||||||||
Sbjct: 120 tggcggtggcggcggtgcgggcgg 143
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>dbj|AK069381.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023013M02, full
           insert sequence
          Length = 1092

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 158 tggccgtggcggcggtgcgggcgg 181
           |||| |||||||||||||||||||
Sbjct: 81  tggcggtggcggcggtgcgggcgg 104
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>dbj|AK068728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160K14,
          full insert sequence
          Length = 3342

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 62 accgtgcgcgcgactcctcc 81
          ||||||||||||||||||||
Sbjct: 43 accgtgcgcgcgactcctcc 62
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>dbj|AK065210.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F20, full
           insert sequence
          Length = 743

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 195 gtcggcggcgcacgcggcgcgccg 218
           |||| |||||||||||||||||||
Sbjct: 651 gtcgccggcgcacgcggcgcgccg 674
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 163    gtggcggcggtgcgggcggtgctg 186
              ||||||||||||||||||| ||||
Sbjct: 366760 gtggcggcggtgcgggcggagctg 366783
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 165     ggcggcggtgcgggcggtgctgtc 188
               ||||||||||| ||||||||||||
Sbjct: 2316027 ggcggcggtgcaggcggtgctgtc 2316004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,322,380
Number of Sequences: 3902068
Number of extensions: 2322380
Number of successful extensions: 43608
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41307
Number of HSP's gapped (non-prelim): 2301
length of query: 351
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 329
effective length of database: 17,147,199,772
effective search space: 5641428724988
effective search space used: 5641428724988
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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