ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet24f06 |
|---|---|
| Clone Library Name | barley_pub |
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 49 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 162 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 49 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 162 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 0.47 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +1 Query: 49 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 162 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 386 Score = 29.3 bits (64), Expect = 2.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 117 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 13 WL G+ C Q PAG DGK G++++ K WR Sbjct: 11 WLMGRRPRCSCQAPAGFDGKDGRGSRVR-EKPPWR 44
>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 49 ASPLSISAGRDLKQASSDLASQP 117 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 49 ASPLSISAGRDLKQASSDLASQP 117 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +1 Query: 49 ASPLSISAGRDLKQASSDLASQP 117 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 385 Score = 28.9 bits (63), Expect = 3.0 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 117 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 13 WLAG+ C Q PAG GK R ++++ K WR Sbjct: 11 WLAGRRPRCSCQSPAGFSGKDRRSSRVR-EKPPWR 44
>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide| deformylase) Length = 188 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/47 (31%), Positives = 26/47 (55%) Frame = +1 Query: 262 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDV 402 + KV D I DI K+ + + SAD + P +G+++ LV+D+ Sbjct: 34 VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDI 76
>GAL1_STRTR (Q9ZB10) Galactokinase (EC 2.7.1.6) (Galactose kinase)| Length = 388 Score = 28.1 bits (61), Expect = 5.2 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1 Query: 265 DKVKDFIHDIGEKIEEAVGFGKPSADVARI 354 DKV+DF +G++ EE VG+ PS +A + Sbjct: 352 DKVEDFKKAVGQRYEEVVGYA-PSFYIAEV 380
>EVC_HUMAN (P57679) Ellis-van Creveld syndrome protein (DWF-1)| Length = 992 Score = 28.1 bits (61), Expect = 5.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = -2 Query: 167 PRSVTSLGLSDEEDMAAGWLARSELACFRSRPAEMESGDAG 45 P+ LG+ + ED+A+G L+ R E E+GD+G Sbjct: 940 PQERGDLGVPNNEDLASGDQTSGSLSSKRLSQQESEAGDSG 980
>ATPG_SPIOL (P05435) ATP synthase gamma chain, chloroplast precursor (EC| 3.6.3.14) Length = 364 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/59 (33%), Positives = 38/59 (64%), Gaps = 9/59 (15%) Frame = +1 Query: 7 SPSPSPLV*FHLIPAS------PLSISAG--RDLKQA-SSDLASQPAAMSSSSDNPNEV 156 +P+ SP++ F PA PL +++ R L+++ +S+LA++ AMS+++DN NE+ Sbjct: 275 TPAFSPILEFEQDPAQILDALLPLYLNSQILRALQESLASELAARMTAMSNATDNANEL 333
>ATPG_ACEWO (P50005) ATP synthase gamma chain, sodium ion specific (EC| 3.6.3.15) (Na(+)-translocating ATPase gamma chain) Length = 299 Score = 28.1 bits (61), Expect = 5.2 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +1 Query: 10 PSPSPLV*FHLIPASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 162 P P L+ + LIP S G ++ A+S+ ++ AM S++ N NE+ D Sbjct: 223 PEPEELLKY-LIPNLVSSTVYGSMIESAASEQGARRTAMESATTNANEMID 272
>FCERB_HUMAN (Q01362) High affinity immunoglobulin epsilon receptor beta-subunit| (FcERI) (IgE Fc receptor, beta-subunit) (Fc epsilon receptor I beta-chain) Length = 244 Score = 27.3 bits (59), Expect = 8.8 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = +1 Query: 4 LSPSPSPLV*FHLIPASPLSISAGRDLKQASS 99 L PS + F ++ SP +S+GR LK ASS Sbjct: 13 LPQEPSSVPAFEVLEISPQEVSSGRLLKSASS 44
>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930| Length = 316 Score = 27.3 bits (59), Expect = 8.8 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 5/52 (9%) Frame = +1 Query: 262 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV 402 ID + IH + K+EEA G G P+A ++ V G AD+V+DV Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDV 212
>NAGA_VIBFU (P96166) N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25)| (GlcNAc 6-P deacetylase) Length = 399 Score = 27.3 bits (59), Expect = 8.8 Identities = 11/15 (73%), Positives = 11/15 (73%) Frame = -1 Query: 360 HVDPGDVGAGLAEPH 316 H DPG VGAGL PH Sbjct: 232 HRDPGVVGAGLLHPH 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,205,155 Number of Sequences: 219361 Number of extensions: 612200 Number of successful extensions: 2347 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2346 length of database: 80,573,946 effective HSP length: 112 effective length of database: 56,005,514 effective search space used: 1344132336 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
