ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet24f04 |
|---|---|
| Clone Library Name | barley_pub |
>INO80_USTMA (Q4PGL2) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1910 Score = 34.3 bits (77), Expect = 0.073 Identities = 29/79 (36%), Positives = 34/79 (43%), Gaps = 12/79 (15%) Frame = +1 Query: 157 SARS*LISELRHPPHLQNQRI*VKKQAEISPEAR-----------TRDGHHLFLQPPVRR 303 S RS L E RH P +RI V+ A +PE R D H +QP RR Sbjct: 148 SYRSELPHERRHAPAAY-ERISVRDDARSAPENRHIDEPAVYRRDEYDAHSREIQPSYRR 206 Query: 304 RQHRLPP-STQPACAGHRR 357 HR P S QP + H R Sbjct: 207 GAHRSPRLSPQPVVSAHER 225
>ENGA_MYCLE (Q49884) GTP-binding protein engA| Length = 461 Score = 31.6 bits (70), Expect = 0.48 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = +1 Query: 73 IVIRAVVATSPPHTRALAYPRLYMATPASAR 165 I I+AVVA +PP R PR+ AT A+AR Sbjct: 381 IWIKAVVAATPPPVRGGKQPRILFATQATAR 411
>LMO6_MOUSE (Q80VL3) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 624 Score = 31.6 bits (70), Expect = 0.48 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +1 Query: 289 PPVRRRQHRLPPSTQPACAGHRRHLPEILGRRPRG 393 PP +RR+ R PP P+C H H R RG Sbjct: 493 PPAQRRRPRSPPPRTPSCHHHHHHRRRRQRHRRRG 527
>NFIB_CHICK (P17924) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)| (NFI-B) (NF-I/B) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 560 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Frame = +1 Query: 13 PKNQAGHLFSVAQRSSSGSIIVIRAVVAT-SPPHTRALAYPRLYMATPASARS*LISELR 189 P++ + L + Q G V ++V++T +PP L +P + PA + +R Sbjct: 328 PQDSSPRLSTFPQHHHPGIPGVAQSVISTRTPPSPSPLPFPAQAILPPAPSSYFSHPTIR 387 Query: 190 HPPHLQNQ 213 +PPHL Q Sbjct: 388 YPPHLNPQ 395
>ATS20_HUMAN (P59510) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1911 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/21 (61%), Positives = 15/21 (71%) Frame = +2 Query: 278 SSCSRLCGGGSTAFHRRRSRP 340 SSCSR CGGG + RR +RP Sbjct: 566 SSCSRTCGGGIESATRRCNRP 586
>COEA1_HUMAN (Q05707) Collagen alpha-1(XIV) chain precursor (Undulin)| Length = 1796 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +3 Query: 324 VDAAGLRGPP--SSPAGDSRPSSARPP 398 V G RGPP + P+G+SRP S PP Sbjct: 1706 VGTQGPRGPPGPAGPSGESRPGSPGPP 1732
>NFIB_MOUSE (P97863) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)| (NFI-B) (NF-I/B) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 570 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = +1 Query: 13 PKNQAGHLFSVAQRSSSGSIIVIRAVVAT-SPPHTRALAYPRLYMATPASARS*LISELR 189 P++ + L + Q G V +V++T +PP L +P + PA + +R Sbjct: 329 PQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIR 388 Query: 190 HPPHLQNQ 213 +PPHL Q Sbjct: 389 YPPHLNPQ 396
>NFIB_MESAU (P13622) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)| (NFI-B) (NF-I/B) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 561 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = +1 Query: 13 PKNQAGHLFSVAQRSSSGSIIVIRAVVAT-SPPHTRALAYPRLYMATPASARS*LISELR 189 P++ + L + Q G V +V++T +PP L +P + PA + +R Sbjct: 329 PQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIR 388 Query: 190 HPPHLQNQ 213 +PPHL Q Sbjct: 389 YPPHLNPQ 396
>COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = +1 Query: 115 RALAYPRLYMATPASARS*LISELRHPPHLQNQRI*VKKQAEISPEARTRDGHHLFLQPP 294 RA PR+Y+A + AR L E+RH H+ A + PE + +L+L P Sbjct: 1707 RAEGIPRIYVAANSGARIGLAEEIRHMFHV----------AWVDPEDPYKGYKYLYLTPQ 1756 Query: 295 VRRR 306 +R Sbjct: 1757 DYKR 1760
>COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 29.6 bits (65), Expect = 1.8 Identities = 20/64 (31%), Positives = 30/64 (46%) Frame = +1 Query: 115 RALAYPRLYMATPASARS*LISELRHPPHLQNQRI*VKKQAEISPEARTRDGHHLFLQPP 294 RA PR+Y+A + AR L E+RH H+ A + PE + +L+L P Sbjct: 1707 RAEGIPRIYVAANSGARIGLAEEIRHMFHV----------AWVDPEDPYKGYKYLYLTPQ 1756 Query: 295 VRRR 306 +R Sbjct: 1757 DYKR 1760
>NFIB_HUMAN (O00712) Nuclear factor 1 B-type (Nuclear factor 1/B) (NF1-B)| (NFI-B) (NF-I/B) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 420 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 1/68 (1%) Frame = +1 Query: 13 PKNQAGHLFSVAQRSSSGSIIVIRAVVAT-SPPHTRALAYPRLYMATPASARS*LISELR 189 P++ + L + Q G V +V++T +PP L +P + PA + +R Sbjct: 329 PQDSSPRLSTFPQHHHPGIPGVAHSVISTRTPPPPSPLPFPTQAILPPAPSSYFSHPTIR 388 Query: 190 HPPHLQNQ 213 +PPHL Q Sbjct: 389 YPPHLNPQ 396
>COEA1_MOUSE (Q80X19) Collagen alpha-1(XIV) chain precursor| Length = 1797 Score = 29.3 bits (64), Expect = 2.4 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Frame = +3 Query: 324 VDAAGLRGPP--SSPAGDSRPSSARPP 398 + G RGPP + P+G+SRP S PP Sbjct: 1707 IGTQGPRGPPGPAGPSGESRPGSPGPP 1733
>KCNKC_HUMAN (Q9HB15) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +1 Query: 286 QPPVRRRQHRLPPSTQPACAGHRRHLPEILGR 381 +PP RR + RLP + C R HL E GR Sbjct: 7 RPPPRRSRRRLPRPSCCCCCCRRSHLNEDTGR 38
>PPSA_MYCTU (Q10977) Phenolpthiocerol synthesis polyketide synthase ppsA| Length = 1876 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 5/49 (10%) Frame = +1 Query: 244 SPEARTRDGHHLFL-----QPPVRRRQHRLPPSTQPACAGHRRHLPEIL 375 +P A T G H + PP Q RL P +P GHR H E++ Sbjct: 987 APRAGTLLGQHTTVATVSASPPSHLWQARLAPDAKPYQGGHRFHQVEVV 1035
>SNIP1_HUMAN (Q8TAD8) Smad nuclear-interacting protein 1| Length = 396 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%) Frame = +1 Query: 223 VKKQAEISPEARTRDGHHLFLQPPVRRRQHRL-----PPSTQPACAGHRRHLPEILGRRP 387 V KQ +SPE + PP RR PP+++PA +GHR + + R P Sbjct: 28 VVKQERLSPE----------VAPPAHRRPDHSGGSPSPPTSEPARSGHRGNRARGVSRSP 77
>DOS_HUMAN (Q8N350) Protein Dos| Length = 725 Score = 23.9 bits (50), Expect(2) = 5.1 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = +3 Query: 330 AAGLRGPPSSPAGDSRPSSA 389 A L G P+ PAG +RP+ A Sbjct: 615 APALAGTPAPPAGAARPARA 634 Score = 22.7 bits (47), Expect(2) = 5.1 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Frame = +1 Query: 184 LRHPPHLQNQRI*VKKQAEISPEARTRDGHHLFLQPPVRRRQHRLPPS-TQPACAG 348 LRH PH + + +A P AR + R RQH P + PA AG Sbjct: 574 LRHDPHFDDTPAAARHRARAHPHAR---------KQWQRGRQHSDPGARAAPALAG 620
>TRI11_HUMAN (Q96F44) Tripartite motif protein 11 (EC 6.3.2.-) (RING finger| protein 92) (BIA1 protein) Length = 468 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/47 (31%), Positives = 18/47 (38%) Frame = +1 Query: 238 EISPEARTRDGHHLFLQPPVRRRQHRLPPSTQPACAGHRRHLPEILG 378 E+SP+ R L + RR H P Q C HR L G Sbjct: 58 ELSPQRNLRPNRPLAKMAEMARRLHPPSPVPQGVCPAHREPLAAFCG 104
>KCNKC_RAT (Q9ERS1) Potassium channel subfamily K member 12 (Tandem pore| domain halothane-inhibited potassium channel 2) (THIK-2) Length = 430 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +1 Query: 286 QPPVRRRQHRLPPSTQPACAGHRRHLPEILGR 381 +PP RR + RLP + C R HL E GR Sbjct: 7 RPPPRRCRRRLPRPSCCCCCCRRSHLNEDTGR 38
>MYO1F_HUMAN (O00160) Myosin If (Myosin-IE)| Length = 1098 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/19 (63%), Positives = 13/19 (68%) Frame = +3 Query: 342 RGPPSSPAGDSRPSSARPP 398 RGPPS+ G SR ARPP Sbjct: 982 RGPPSTSLGASRRPRARPP 1000
>INVS_HUMAN (Q9Y283) Inversin (Inversion of embryo turning homolog)| (Nephrocystin-2) Length = 1065 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/18 (72%), Positives = 13/18 (72%) Frame = +3 Query: 339 LRGPPSSPAGDSRPSSAR 392 LRG SPAG SRP SAR Sbjct: 798 LRGGRCSPAGSSRPGSAR 815
>PTFLB_ECOLI (P32154) Fructose-like PTS system EIIBC component [Includes:| Fructose-like phosphotransferase enzyme IIB component (EC 2.7.1.69) (PTS system fructose-like EIIB component); Fructose-like permease IIC component (PTS system fructose-like EIIC co Length = 483 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/36 (41%), Positives = 21/36 (58%) Frame = +1 Query: 25 AGHLFSVAQRSSSGSIIVIRAVVATSPPHTRALAYP 132 A LF+ ++ ++ S IV+ A VAT P ALA P Sbjct: 364 APKLFTRQEKEAASSAIVVGATVATEPAIPYALAAP 399
>COA2_HUMAN (O00763) Acetyl-CoA carboxylase 2 (EC 6.4.1.2) (ACC-beta) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2483 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/59 (28%), Positives = 29/59 (49%) Frame = +1 Query: 115 RALAYPRLYMATPASARS*LISELRHPPHLQNQRI*VKKQAEISPEARTRDGHHLFLQP 291 RA A P++Y+A + AR + E++H H+ A + PE + +L+L P Sbjct: 1843 RAEAIPKIYVAANSGARIGMAEEIKHMFHV----------AWVDPEDPHKGFKYLYLTP 1891
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 24.6 bits (52), Expect(2) = 8.0 Identities = 10/20 (50%), Positives = 11/20 (55%) Frame = +3 Query: 339 LRGPPSSPAGDSRPSSARPP 398 L GPP P G + SS PP Sbjct: 229 LSGPPMGPKGGAAASSVGPP 248 Score = 21.2 bits (43), Expect(2) = 8.0 Identities = 8/23 (34%), Positives = 11/23 (47%) Frame = +1 Query: 268 GHHLFLQPPVRRRQHRLPPSTQP 336 G+H ++PP R PP P Sbjct: 192 GYHAPMEPPTSRLFQGPPPGAPP 214
>PCHB_PSEAE (Q51507) Salicylate biosynthesis protein pchB| Length = 101 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -2 Query: 140 YKRG*ARARVCGGEVATTARMTMMLPEDDRWATEKRWPA*FFGGL 6 Y + +R + + R+ MLPE RWA E A F GL Sbjct: 34 YVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLDAPFVEGL 78
>COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha) [Includes:| Biotin carboxylase (EC 6.3.4.14)] Length = 2345 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +1 Query: 115 RALAYPRLYMATPASARS*LISELRHPPHL 204 RA PR+Y+A + AR L E+RH H+ Sbjct: 1706 RAEGIPRIYVAANSGARIGLAEEIRHMFHV 1735
>PAQR9_MOUSE (Q6TCG2) Progestin and adipoQ receptor family member 9 (Progestin| and adipoQ receptor family member IX) Length = 375 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/22 (50%), Positives = 16/22 (72%) Frame = +3 Query: 333 AGLRGPPSSPAGDSRPSSARPP 398 AG++GPP+S + S P+SA P Sbjct: 10 AGVKGPPASTSRRSHPASASAP 31
>HXB2_HUMAN (P14652) Homeobox protein Hox-B2 (Hox-2H) (Hox-2.8) (K8)| Length = 356 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 298 RRRQHRLPPSTQPACAG 348 R+ QHR PP +PAC G Sbjct: 200 RQTQHREPPDGEPACPG 216 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,003,458 Number of Sequences: 219361 Number of extensions: 846545 Number of successful extensions: 3438 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3039 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3430 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
